Speaker | Codes | Papers | Intresting Links | Job Openings |
David Balcells University of Oslo
Generative Machine Learning for Transition Metal Chemistry | tmQM and tmQM-L dataset and PL-MOGA genetic algorithm | |
tmQM Dataset—Quantum Geometries and Properties of 86k Transition Metal Complexes | Journal of Chemical Information and Modeling | |
Directional Multiobjective Optimization of Metal Complexes at the Billion-Scale with the tmQMg-L Dataset and PL-MOGA Algorithm | Theoretical and Computational Chemistry | ChemRxiv | Cambridge Open Engage | |
Repository for the tmQMg-L dataset files. | |
GitHub - hkneiding/PL-MOGA: Pareto Lighthouse Multiobjective Genetic Algorithm for the de novo design of transition metal complexes. | |
Volker Deringer University of Oxford
Data-driven interatomic potentials for inorganic materials chemistry | How to validate machine-learned interatomic potentials | The Journal of Chemical Physics | AIP Publishing | |
GitHub - MorrowChem/how-to-validate-potentials: Some tutorial-style examples for validating machine-learned interatomic potentials | |
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Eva Zurek University at Buffalo, SUNY
Machine Learned Interatomic Potentials for Binary Carbides Trained on the AFLOW Database | XtalOpt - Zurek Lab
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RandSpg: Generate Random Crystals with Specific Spacegroups | |
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Matthew Carbone Brookhaven National Laboratory
Flexible formulation of value for experiment interpretation and design | GitHub - matthewcarbone/ScientificValueAgent: The Scientific Value Agent | |
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Richard Hennig University of Florida
Accelerating Materials Discovery Through Deep Learning and Ultra-Fast Potentials | Ultra-fast force field | |
UF3: a python library for generating ultra-fast interatomic potentials | |
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Fang Liu Emory University
Machine learning aided chemical discovery in the solution phase | GitHub - Liu-group/AutoSolvate: Automated workflow for generating quantum chemistry calculation of explicitly solvated molecules | |
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Chenru Duan Microsoft
Diffusion models on sampling rare events in chemistry | GitHub - chenruduan/OAReactDiff: An object-aware diffusion model for generating chemical reactions | |
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Rose Cersonsky University of Wisconsin-Madison
Data-driven approaches to chemical and materials science:the impact of data selection, representation, and interpretability | GitHub - scikit-learn-contrib/scikit-matter: A collection of scikit-learn compatible utilities that implement methods born out of the materials science and chemistry communities | |
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Will Bricker University of New Mexico
Machine-learned electron densities of nucleic acids | Predicting accurate ab initio DNA electron densities with equivariant neural networks - ScienceDirect | |
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Kieron Burke University of California, Irvine
Machine Learning Density Functionals | Machine learning and density functional theory | Nature Reviews Physics | |
https://pubs.rsc.org/en/content/articlelanding/2024/cp/d4cp00878b
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Gabor Csanyi University of Cambridge
Foundation models for materials chemistry | | |
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Mario Barbatti Aix Marseille University, CNRS, ICR
Machine Learning Nonadiabatic Dynamics | Newton-X package for non-adibatic dynamics + ML
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The Newton-X platform for surface hopping and nuclear ensembles | |
Newton-X | |
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Puck van Gerwen EPFL
EquiReact: Equivariant Neural Networks for Chemical Reactions | EquiReact model and datasets
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GitHub - lcmd-epfl/EquiReact | |
Comprehensive exploration of graphically defined reaction spaces | Scientific Data | |
High accuracy barrier heights, enthalpies, and rate coefficients for chemical reactions | Scientific Data | |
Reaction profiles for quantum chemistry-computed [3 + 2] cycloaddition reactions | Scientific Data | |
Reaction-based machine learning representations for predicting the enantioselectivity of organocatalysts | |
Y Z University of Michigan
Unusual Dynamics of Tetrahedral Liquids Caused by the Competition between Dynamic Heterogeneity and Structural Heterogeneity
| LiquidLib by Z Lab (z-laboratory.github.io) | |
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Julien Lam CNRS
Exploiting constrained linear models for machine-learning interaction potentials | Physical LassoLars Interactions Potential | |
GitHub - LAM-GROUP/PLIP: Linear Machine learning Interatomic Potential for atomistic simulations | |
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Dmitry Zubarev IBM Research
Foundational Models for Chemical Discovery | MolFormer | |
Large-scale chemical language representations capture molecular structure and properties | Nature Machine Intelligence | |
GitHub - IBM/molformer | |
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Joshua Rackers Genentech / Prescient Design
Building Physics into AI for Drug Discovery | Equivariant NNs | |
e3nn | |
19. Equivariant Neural Network for Predicting Trajectories | |
Structure-based drug design by denoising voxel grids | |
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Sakib Matin LANL
Machine Learning Potentials with long-range Coulomb interaction: Atomistic simulations of water | HIP-NN potential with tensor sensitivity | |
GitHub - lanl/hippynn: python library for atomistic machine learning | |
Lightweight and effective tensor sensitivity for atomistic neural networks | The Journal of Chemical Physics | AIP Publishing | |
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Chiho Kim GATech / Matmerize, Inc.
Machine Learning-Aided Design of Biodegradable Polymers | Bioplastic design using multitask deep neural networks | Communications Materials | |
PolymRize TM | |
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Daniel Schwalbe-Koda UCLA
Unifying Views on the Extrapolation Power of Machine Learning Potentials and Materials Thermodynamics | dskoda/quests: Quick Uncertainty and Entropy via STructural Similarity (github.com) | |
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Rebecca Lindsey University of Michigan, Ann Arbor
Explaining Performance of Physics-Informed Machine-Learned Interatomic Models | ChIMES ML-IAP fitting (lsq), active learning (al), and calculator, including scripts for installation in LAMMPS | |
GitHub - rk-lindsey/chimes_lsq: Tools to develop ChIMES parameter sets | |
GitHub - rk-lindsey/al_driver: AI-driven framework for automated ChIMES model development | |
GitHub - rk-lindsey/chimes_calculator: Tools to interface ChIMES with various external codes. | |
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Alexandre Tkatchenko University of Luxembourg
Navigating Chemical Compound Space with Machine Learning | Institute for Pure & Applied Mathematics - IPAM (ucla.edu) | |
QM7-X, a comprehensive dataset of quantum-mechanical properties spanning the chemical space of small organic molecules | Scientific Data | |
“Freedom of design” in chemical compound space: towards rational in silico design of molecules with targeted quantum-mechanical properties | |
[2309.00506] Enabling Inverse Design in Chemical Compound Space: Mapping Quantum Properties to Structures for Small Organic Molecules | |
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Nong Artrith Debye Institute for Nanomaterials Science
Accelerated Sampling Strategies and Machine Learning Potentials for Modeling Non-Crystalline Energy Materials | atomisticnet/aenet-PyTorch: ænet-PyTorch: a GPU-supported implementation for machine learning atomic potentials training (github.com) | |
GitHub - atomisticnet/aenet-lammps: Interface aenet with the LAMMPS molecular dynamics software (https://lammps.sandia.gov) | |
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Karel Berka Palacky University Olomouc
MolMeDB - free database of molecules on membranes | Database of molecules on membrabes | |
MolMeDB | MolMeDB (upol.cz) | |
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interactive session Jason Hattrick-Simpers University of Toronto
Tutorial on the use of LLMs in Science
| LLM-Prop and LLM finetuning for materials prediction | |
https://github.com/vertaix/LLM-Prop | |
https://cohereai.notion.site/MRS-Fall-2023-DS04-Tutorial-Runbook-7ed8ca8fb2bf4e18937e6a119b63e3e5 | |
https://colab.research.google.com/drive/1Al-mweiY6fnxjHTZJGia_z7RPoKPvZfM?usp=sharing#scrollTo=gZnFnjGdyGbV | |
https://vertaix.princeton.edu/ | |
[2310.14029] LLM-Prop: Predicting Physical And Electronic Properties Of Crystalline Solids From Their Text Descriptions | |
Roberto Car Princeton University
Deep potential models for equilibrium and near equilibrium processes | A deep potential model with long-range electrostatic interactions | The Journal of Chemical Physics | AIP Publishing
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3.14. Deep potential long-range (DPLR) — DeePMD-kit documentation https://github.com/deepmodeling/deepmd-kit | |
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Alan Aspuru-Guzik University of Toronto
Self-driving Labs | Self-driving labs, robotics for synthesis and lab chatbots | |
On scientific understanding with artificial intelligence | Nature Reviews Physics | |
The Matter Simulation (R)evolution | ACS Central Science | |
Organa: A Robotic Assistant for Automated Chemistry Experimentation and Characterization | |
[2402.05015] A Sober Look at LLMs for Material Discovery: Are They Actually Good for Bayesian Optimization Over Molecules? | |
Pavlo Dral Xiamen University
From fast potentials for dynamics to learning dynamics
TALK SLIDES | MLatom – AI-enhanced computational chemistry http://mlatom.com/ | Postdoc in method development for materials or molecular simulations |
https://xacs.xmu.edu.cn/docs/mlatom/ |
Aditya Nandy UCLA | University of Chicago
Leveraging Community Knowledge to Forge a Path Forward for Transition Metal Complex and Metal-Organic Framework Design | Generation of MOFs and metallorganic complexes | |
hjkgrp/molSimplify: molSimplify code (github.com) | |
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Richard Messerly LANL
Nanoreactor active learning: Discovering chemistry with a general reactive machine learning potential | Reactive ANI-1xnr potential: code/applications/data | |
GitHub - atomistic-ml/ani-1xnr: Machine learning interatomic potential for condensed-phase reactive chemistry | |
https://springernature.figshare.com/ndownloader/files/43190004 | |
Exploring the frontiers of condensed-phase chemistry with a general reactive machine learning potential | |
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Bakhtiyor Rasulev North Dakota State University
Application of Mixture-type Descriptors in Machine Learning Modeling of Materials" | Using nano-QSAR to predict the cytotoxicity of metal oxide nanoparticles | Nature Nanotechnology | |
Development of QSAR Models on the Fouling-Release Performance of Silicone Oil-modified Siloxane Polyurethane Coatings | Polymer Science | ChemRxiv | Cambridge Open Engage | |
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Nina Andrejevic Argonne National Laboratory
Advancing materials characterization through physics-guided machine learning
| Welcome to e3nn! {#welcome} | e3nn | |
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Markus Reiher ETH Zurich
Lifelong Machine Learning Potentials | Software for Chemical Interaction Networks - SCINE (ethz.ch) | |
Chemoton 2.0: Autonomous Exploration of Chemical Reaction Networks | Journal of Chemical Theory and Computation (acs.org) | |
Lifelong Machine Learning Potentials | Journal of Chemical Theory and Computation (acs.org) | |
ReiherGroup/CoRe_optimizer: Continual Resilient (CoRe) Optimizer for PyTorch (github.com) | |
Code/Data for Lifelong Machine Learning Potentials (zenodo.org) | |
Roman Zubatyuk Carnegie Mellon University
AIMNet2: Robust neural network potential for organic, element-organic molecules and chemical reactions | isayevlab/AIMNet2 (github.com) | |
AIMNet2: A Neural Network Potential to Meet your Neutral, Charged, Organic, and Elemental-Organic Needs | Theoretical and Computational Chemistry | ChemRxiv | Cambridge Open Engage | |
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Johannes Margraf University of Bayreuth
Materials Discovery with Foundation Models | Foundation models — mace 0.1.0 documentation (mace-docs.readthedocs.io) | |
TUM-DAML/gemnet_tf: GemNet model in TensorFlow, as proposed in "GemNet: Universal Directional Graph Neural Networks for Molecules" (NeurIPS 2021) (github.com) | |
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Matthias Rupp Luxembourg Institute of Science and Technology (LIST)
Thermal transport via machine-learning potentials | Phys. Rev. B 108, L100302 (2023) - Heat flux for semilocal machine-learning potentials (aps.org) | |
sirmarcel/gknet-archive: data and code for "heat flux for semi-local machine-learning potentials" (github.com) | |
sirmarcel/glp: tools for graph-based machine-learning potentials in jax (github.com) | |
uf3 - Ultra-Fast Force Fields · GitHub | |
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Tom Penfold Newcastle Univeristy
Deep Neural Networks for X-ray Spectroscopy: Hero or Zero? | Codes and Datasets (penfoldgroup.co.uk) | |
NNs for X-ray spectroscopy / xanesnet · GitLab | |
Accurate, Affordable, and Generalisable Machine Learning Simulations of Transition Metal X-ray Absorption Spectra using the XANESNET Deep Neural Network | Theoretical and Computational Chemistry | ChemRxiv | Cambridge Open Engage | |
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Connor Coley MIT
Molecular design and the intersection with synthesis | Closing the Execution Gap in Generative AI for Chemicals and Materials: Freeways or Safeguards · From Novel Chemicals to Opera (pubpub.org) | |
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Marivi Fernandez-Serra Stony Brook University
Learning the exchange and correlation functional in DFT | semodi/neuralxc: Implementation of a machine learned density functional (github.com) | |
semodi/libnxc: A library for using machine-learned exchange-correlation functionals for density-functional theory (github.com) | |
David Yaron Carnegie Mellon University
Quantum chemical Hamiltonians as flexible and interpretable model forms for machine learning | djyaron/DFTBML: Fitting DFTB Hamiltonians to data. (github.com) | |
[2210.11682] Semiempirical Hamiltonians learned from data can have accuracy comparable to Density Functional Theory (arxiv.org) | |
Treating Semiempirical Hamiltonians as Flexible Machine Learning Models Yields Accurate and Interpretable Results | Journal of Chemical Theory and Computation (acs.org) | |
Jenna Pope Pacific Northwest National Laboratory
Accelerating Atomic-scale Simulations of Molecules and Materials with Neural Network Potentials | [2312.07511] A Hitchhiker's Guide to Geometric GNNs for 3D Atomic Systems (arxiv.org) | |
exalearn/hydronet: HydroNet: Benchmark Tasks for Preserving Long-range Interactions and Structural Motifs in Predictive and Generative Models for Molecular Data, at the 34th Conference on Neural Information Processing Systems (NuerIPS), Workshop on Machine Learning and the Physical Sciences [https://arxiv.org/abs/2012.00131] (github.com) | |
pnnl/Active-Sampling-for-Atomistic-Potentials: Active sampling for neural network potentials: Accelerated simulations of shear-induced deformation in Cu–Ni multilayers (github.com) | |
pnnl/downstream_mol_gnn: Reducing Down(stream)time: Pretraining Molecular GNNs using Heterogeneous AI Accelerators (github.com) | |
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Jing Huang Westlake University
DP/MM: a hybrid force field model for zinc-protein dynamics | JingHuangLab/openmm_deepmd_plugin (github.com) | |
Marina Meila University of Washington
Coordinates with physical meaning
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yuchaz/homology_emb (github.com) | |
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Manifold Learning: What, How, and Why | Annual Reviews | |
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Manifold Coordinates with Physical Meaning (jmlr.org) | |
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