BioSample examples
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1
Generic
2
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idstrainbreedcultivarisolatelabel
biomaterial_provider
collection_dateenv_biome
geo_loc_name
hostsubspecf_gen_lintissue_typeageanamorphauthoritycell_linecell_typecollected_by
culture_collection
dev_stagediseasedisease_stagegenotypehaplotypehealth_statehost_body_site
isolation_source
lab_hostpassage_historypathovarphenotype
sample_type
serotypeserovarsex
specimen_voucher
subgroupsubtypeteleomorphreplicate
3
WT rep1Retina sample from male wild-type C57BL/6 mouse, replicate 1Mus musculus10090C57BL/6retinapost natal day 21wild typemale
biological replicate 1
4
WT rep2Retina sample from male wild-type C57BL/6 mouse, replicate 2Mus musculus10090C57BL/6retinapost natal day 21wild typemale
biological replicate 2
5
Nrl-KO rep1Retina sample from male Nrl-KO C57BL/6 mouse, replicate 1Mus musculus10090C57BL/6retinapost natal day 21Nrl-/-male
biological replicate 1
6
Nrl-KO rep2Retina sample from male Nrl-KO C57BL/6 mouse, replicate 2Mus musculus10090C57BL/6retinapost natal day 21Nrl-/-male
biological replicate 2
7
8
MIMS.me.host-associated
9
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idstrainbreedcultivarisolatelabel
biomaterial_provider
*collection_date*env_biome*env_feature*env_material*geo_loc_name*lat_lon*project_nameref_biomaterial*hostrel_to_oxygen
samp_collect_device
samp_mat_process
sample_size
source_material_id
depthelevaltitudeageblood_press_diastblood_press_systbody_habitatbody_product
chem_administration
dry_mass
family_relationship
genotypegravidity
height_or_length
host_body_sitehost_body_temphost_color
host_common_name
host_diethost_disease_stat
host_growth_cond
host_shape
host_subject_id
host_taxid
infra_specific_name
infra_specific_rank
last_meallife_stagemisc_param
organism_count
oxy_stat_samp
perturbation
phenotype
samp_salinity
samp_store_dur
samp_store_loc
samp_store_temp
sex
substrate
temptot_massreplicate
10
L1_1gut content sample of silver carp no.1_1fish gut metagenome1602388PRJDB32562012-04-10
not applicable
not applicablefeces
China:Wuhan, Dongxihu Fish Farm
30.64 N 114.21 EIntestinal microbiota diversity of freshwater fish
Hypophthalmichthys molitrix
no.1
biological replicate 1
11
L1_2gut content sample of silver carp no.1_2fish gut metagenome1602388PRJDB32562012-04-10
not applicable
not applicablefeces
China:Wuhan, Dongxihu Fish Farm
30.64 N 114.21 EIntestinal microbiota diversity of freshwater fish
Hypophthalmichthys molitrix
no.1
biological replicate 2
12
L2_1gut content sample of silver carp no.2_1fish gut metagenome1602388PRJDB32562012-04-10
not applicable
not applicablefeces
China:Wuhan, Dongxihu Fish Farm
30.64 N 114.21 EIntestinal microbiota diversity of freshwater fish
Hypophthalmichthys molitrix
no.2
biological replicate 1
13
L2_2gut content sample of silver carp no.2_2fish gut metagenome1602388PRJDB32562012-04-10
not applicable
not applicablefeces
China:Wuhan, Dongxihu Fish Farm
30.64 N 114.21 EIntestinal microbiota diversity of freshwater fish
Hypophthalmichthys molitrix
no.2
biological replicate 2
14
LB_1gut mucosa sample of silver carp 1fish gut metagenome1602388PRJDB32562012-04-10
not applicable
not applicablemucus
China:Wuhan, Dongxihu Fish Farm
30.64 N 114.21 EIntestinal microbiota diversity of freshwater fish
Hypophthalmichthys molitrix
no.1
15
LB_2gut mucosa sample of silver carp 2fish gut metagenome1602388PRJDB32562012-04-10
not applicable
not applicablemucus
China:Wuhan, Dongxihu Fish Farm
30.64 N 114.21 EIntestinal microbiota diversity of freshwater fish
Hypophthalmichthys molitrix
no.2
16
W1_1gut content sample of Wuchang bream no.1_1fish gut metagenome1602388PRJDB32562012-04-10
not applicable
not applicablefeces
China:Wuhan, Dongxihu Fish Farm
30.64 N 114.21 EIntestinal microbiota diversity of freshwater fish
Megalobrama amblycephala
no.1
biological replicate 1
17
W1_2gut content sample of Wuchang bream no.1_2fish gut metagenome1602388PRJDB32562012-04-10
not applicable
not applicablefeces
China:Wuhan, Dongxihu Fish Farm
30.64 N 114.21 EIntestinal microbiota diversity of freshwater fish
Megalobrama amblycephala
no.1
biological replicate 2
18
W2_1gut content sample of Wuchang bream no.2_1fish gut metagenome1602388PRJDB32562012-04-10
not applicable
not applicablefeces
China:Wuhan, Dongxihu Fish Farm
30.64 N 114.21 EIntestinal microbiota diversity of freshwater fish
Megalobrama amblycephala
no.2
biological replicate 1
19
W2_2gut content sample of Wuchang bream no.2_2fish gut metagenome1602388PRJDB32562012-04-10
not applicable
not applicablefeces
China:Wuhan, Dongxihu Fish Farm
30.64 N 114.21 EIntestinal microbiota diversity of freshwater fish
Megalobrama amblycephala
no.2
biological replicate 2
20
WB_1gut mucosa sample of Wuchang bream 1fish gut metagenome1602388PRJDB32562012-04-10
not applicable
not applicablemucus
China:Wuhan, Dongxihu Fish Farm
30.64 N 114.21 EIntestinal microbiota diversity of freshwater fish
Megalobrama amblycephala
no.1
21
WB_2gut mucosa sample of Wuchang bream 2fish gut metagenome1602388PRJDB32562012-04-10
not applicable
not applicablemucus
China:Wuhan, Dongxihu Fish Farm
30.64 N 114.21 EIntestinal microbiota diversity of freshwater fish
Megalobrama amblycephala
no.2
22
23
MIMS.me.human-gut
24
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idstrainbreedcultivarisolatelabel
biomaterial_provider
*collection_date*env_biome*env_feature*env_material*geo_loc_name*lat_lon*project_nameref_biomaterial*hostrel_to_oxygen
samp_collect_device
samp_mat_process
sample_size
source_material_id
age
body_mass_index
body_product
chem_administration
family_relationship
gastrointest_disord
genotype
host_body_site
host_body_temphost_diet
host_disease_stat
host_height
host_subject_id
ihmc_ethnicity
ihmc_medication_code
last_mealliver_disordmedic_hist_perform
misc_param
occupationorganism_count
oxy_stat_samp
perturbationphenotypepulsesamp_salinity
samp_store_dur
samp_store_loc
samp_store_temp
sexspecial_diettemptot_mass
25
patient 1gut microbiomes isolated from feces of Japanese patient 1human gut metagenome4081702017-03-12
not applicable
not applicablefecesJapanmissingMetagenomics of Japanese gut microbiomesHomo sapienspatient 1
26
patient 2gut microbiomes isolated from feces of Japanese patient 2human gut metagenome4081702017-03-12
not applicable
not applicablefecesJapanmissingMetagenomics of Japanese gut microbiomesHomo sapienspatient 2
27
patient 3gut microbiomes isolated from feces of Japanese patient 3human gut metagenome4081702017-03-12
not applicable
not applicablefecesJapanmissingMetagenomics of Japanese gut microbiomesHomo sapienspatient 3
28
patient 4gut microbiomes isolated from feces of Japanese patient 4human gut metagenome4081702017-03-12
not applicable
not applicablefecesJapanmissingMetagenomics of Japanese gut microbiomesHomo sapienspatient 4
29
30
MIMS.me.miscellaneous
31
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idstrainbreedcultivarisolatelabel
biomaterial_provider
*collection_date*env_biome*env_feature*env_material*geo_loc_name*lat_lon*project_nameref_biomaterialrel_to_oxygen
samp_collect_device
samp_mat_processsample_size
source_material_id
depthelevaltitudealkalinityammoniumbiomassbromidecalcium
chem_administration
chloride
chlorophyll
currentdensitydiether_lipids
diss_carb_dioxide
diss_hydrogendiss_inorg_carb
diss_org_nitro
diss_oxygen
misc_param
nitratenitritenitroorg_carb
org_matter
org_nitroorganism_countoxy_stat_sampperturbationphphosphate
phosplipid_fatt_acid
potassiumpressuresalinity
samp_store_dur
samp_store_loc
samp_store_temp
silicatesodium
sulfate
sulfidetemp
32
Korean fish sauce A-1bacterial community of korean fish sauce A-1food fermentation metagenome11545812015
not applicable
not applicablenot applicableSouth Korea:Chung-nam34.86 N 126.99 EBacterial community of Korean fish sauce
33
Korean fish sauce A-2bacterial community of korean fish sauce A-2food fermentation metagenome11545812015
not applicable
not applicablenot applicableSouth Korea:Chung-nam36.51 N 126.79 EBacterial community of Korean fish sauce
34
Korean fish sauce A-3bacterial community of korean fish sauce A-3food fermentation metagenome11545812015
not applicable
not applicablenot applicableSouth Korea:Chung-nam36.42 N 126.85 EBacterial community of Korean fish sauce
35
36
MIMS.me.soil
37
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idstrainbreedcultivarisolatelabel
biomaterial_provider
*collection_date*env_biome*env_feature*env_material*geo_loc_name*lat_lon*project_nameref_biomaterialrel_to_oxygen
samp_collect_device
samp_mat_processsample_size
source_material_id
*depth*elevaltitude
agrochem_addition
al_satal_sat_meth
annual_season_precpt
annual_season_temp
crop_rotationcur_land_use
cur_vegetation
cur_vegetation_meth
drainage_class
extreme_event
extreme_salinity
fao_classfirefloodingheavy_metals
heavy_metals_meth
horizonhorizon_meth
link_addit_analys
link_class_info
link_climate_info
local_classlocal_class_meth
microbial_biomass
microbial_biomass_meth
misc_paramphph_meth
pool_dna_extracts
previous_land_use
previous_land_use_meth
profile_positionsalinity_meth
samp_vol_we_dna_ext
sieving
slope_aspect
slope_gradient
soil_typesoil_type_methstore_condtexturetexture_methtillagetot_n_methtot_nitrotot_org_c_methtot_org_carbwater_content_soil
water_content_soil_meth
38
NF-1farm soil with no fertilization spot1soil metagenome4106582015-05-08village biomefarmfarm soil
Japan:Kanagawa, Sagamihara city
35.557247 N 139.266921 E
structural analysis of microbial community for feild soil and compost made from coffee lees0.1m230
39
NF-2farm soil with no fertilization spot2soil metagenome4106582015-05-08village biomefarmfarm soil
Japan:Kanagawa, Sagamihara city
35.557247 N 139.266921 E
structural analysis of microbial community for feild soil and compost made from coffee lees0.1m230
40
FC-1farm soil fertilized by coffee compost spot1soil metagenome4106582015-05-08village biomefarmfarm soil
Japan:Kanagawa, Sagamihara city
35.557247 N 139.266921 E
structural analysis of microbial community for feild soil and compost made from coffee lees0.1m230
41
FC-2farm soil fertilized by coffee compost spot2soil metagenome4106582015-05-08village biomefarmfarm soil
Japan:Kanagawa, Sagamihara city
35.557247 N 139.266921 E
structural analysis of microbial community for feild soil and compost made from coffee lees0.1m230
42
43
MIMS.me.water
44
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idstrainbreedcultivarisolatelabel
biomaterial_provider
*collection_date*env_biome*env_feature*env_material*geo_loc_name*lat_lon*project_namerel_to_oxygensamp_collect_device
samp_mat_process
sample_size*depthelevalkalinity
alkyl_diethers
aminopept_actammoniumatmospheric_data
bacteria_carb_prod
biomass
bishomohopanol
bromidecalcium
carb_nitro_ratio
chem_administration
chloridechlorophyllcurrentdensitydiether_lipids
diss_carb_dioxide
diss_hydrogen
diss_inorg_carb
diss_inorg_nitrodiss_inorg_phospdiss_org_carbdiss_org_nitro
diss_oxygen
glucosidase_actlight_intensitymagnesiummean_frict_vel
mean_peak_frict_vel
misc_paramn_alkanesnitratenitritenitroorg_carborg_matterorg_nitroorganism_count
oxy_stat_samp
part_org_carb
part_org_nitro
perturbation
petroleum_hydrocarb
phphaeopigmentsphosphate
phosplipid_fatt_acid
photon_fluxpotassiumpressureprimary_prodredox_potentialsalinitysamp_store_dursamp_store_locsamp_store_tempsilicatesodium
soluble_react_phosp
sulfatesulfide
suspend_part_matter
temptidal_stage
tot_depth_water_col
tot_diss_nitrotot_inorg_nitrotot_nitrotot_part_carbtot_phosp
45
EbDMS baseline sample in Equatorial Pacific Oceanmarine plankton metagenome1874687PRJDB34632012-02-08ocean biomeoceansurface waterPacific Ocean0.0011 N 115.0011 WA study on microbial functional groups producing a climate related gas in the ocean5 m
46
EpDMS peak sample in Equatorial Pacific Oceanmarine plankton metagenome1874687PRJDB34632012-02-07ocean biomeoceansurface waterPacific Ocean0.0561 N 115.0339 WA study on microbial functional groups producing a climate related gas in the ocean5 m
47
NbDMS baseline sample in North Pacific Oceanmarine plankton metagenome1874687PRJDB34632011-12-12ocean biomeoceansurface waterPacific Ocean22.9989 N 178.7197 EA study on microbial functional groups producing a climate related gas in the ocean5 m
48
NpDMS peak sample in North Pacific Oceanmarine plankton metagenome1874687PRJDB34632011-12-12ocean biomeoceansurface waterPacific Ocean23.0017 N 177.8061 EA study on microbial functional groups producing a climate related gas in the ocean5 m
49
SbDMS baseline sample in South Pacific Oceanmarine plankton metagenome1874687PRJDB34632012-01-07ocean biomeoceansurface waterPacific Ocean22.5206 S 119.9997 WA study on microbial functional groups producing a climate related gas in the ocean5 m
50
SpDMS peak sample in South Pacific Oceanmarine plankton metagenome1874687PRJDB34632012-01-06ocean biomeoceansurface waterPacific Ocean19.9994 S 120.0142 WA study on microbial functional groups producing a climate related gas in the ocean5 m
51
52
MIGS.ba
53
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idlocus_tag_prefixstrainbreed
cultivar
isolate
labelbiomaterial_provider
*collection_date
*env_biome*env_feature*env_material*geo_loc_name*lat_lon*project_name*isol_growth_condt
*ref_biomaterial
*num_repliconsestimated_size
biotic_relationship
encoded_traits
extrachrom_elements
health_disease_stat
hosthost_spec_rangepathogenicityrel_to_oxygen
samp_collect_device
samp_mat_process
sample_size
source_material_id
subspecf_gen_lintrophic_level
54
JCM 9653Thermococcus peptonophilus JCM 9653
Thermococcus peptonophilus OG-1 = JCM 9653
523851PRJDB786JCM9653JCM 9653JCM
not applicable
not applicablenot applicablenot applicablenot applicablenot applicable
NBRP : Genome information of microbial organism related human and environment
http://www.jcm.riken.jp/cgi-bin/jcm/jcm_number?JCM=9653
missingmissing
55
NBRC 102024Alcanivorax sp. NBRC 102024Alcanivorax sp. NBRC 1020241113895PRJDB2892ALCSP23NBRC 102024
Biological Resource Center, NITE (NBRC)
not applicable
not applicablenot applicablenot applicablenot applicablenot applicable
The NBRC Genome Sequencing Project for Pollutant-degrading bacteria
http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=00102024
missingmissingfree livingaerobeheterotroph
56
57
MIGS.ba.human-gut
58
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idlocus_tag_prefixstrainbreed
cultivar
isolate
labelbiomaterial_provider
*collection_date
*env_biome*env_feature*env_material*geo_loc_name*lat_lon*project_name*isol_growth_condt
*ref_biomaterial
*num_repliconsestimated_size
biotic_relationship
encoded_traits
extrachrom_elements
health_disease_stat
*hosthost_spec_rangepathogenicityrel_to_oxygen
samp_collect_device
samp_mat_process
sample_size
source_material_id
subspecf_gen_lintrophic_levelage
body_mass_index
body_product
chem_administration
family_relationship
gastrointest_disordgenotypehost_body_sitehost_body_temphost_diet
host_disease_stat
host_height
host_subject_idihmc_ethnicity
ihmc_medication_code
last_mealliver_disord
medic_hist_perform
misc_paramoccupation
organism_count
oxy_stat_samp
perturbationphenotypepulsesamp_salinity
samp_store_dur
samp_store_loc
samp_store_temp
sexspecial_diettemptot_mass
59
Clostridium botulinum type B strain 111_delta2
whole genome sequence, C. botulinum type B strain 111_delta2Clostridium botulinum1491PRJDB34021112014-12-01not applicablenot applicablefecesJapannot applicable
whole genome sequence, Clostridium botulinum type B strain 111_delta2
9230406894201913.9 Mb
Homo sapiens
botulism
60
61
MIGS.ba.soil
62
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idlocus_tag_prefixstrainbreed
cultivar
isolate
labelbiomaterial_provider
*collection_date
*env_biome*env_feature*env_material*geo_loc_name*lat_lon*project_name*isol_growth_condt
*ref_biomaterial
*num_repliconsestimated_size
biotic_relationship
encoded_traits
extrachrom_elements
health_disease_stat
hosthost_spec_rangepathogenicityrel_to_oxygen
samp_collect_device
samp_mat_process
sample_size
source_material_id
subspecf_gen_lintrophic_level*depth*elevaltitude
agrochem_addition
al_satal_sat_meth
annual_season_precpt
annual_season_temp
crop_rotationcur_land_usecur_vegetation
cur_vegetation_meth
drainage_classextreme_event
extreme_salinity
fao_classfirefloodingheavy_metals
heavy_metals_meth
horizon
horizon_meth
link_addit_analys
link_class_infolink_climate_infolocal_class
local_class_meth
microbial_biomass
microbial_biomass_meth
misc_paramphph_methpool_dna_extractsprevious_land_use
previous_land_use_meth
profile_positionsalinity_meth
samp_vol_we_dna_ext
sievingslope_aspectslope_gradientsoil_typesoil_type_methstore_condtexturetexture_methtillagetot_n_methtot_nitrotot_org_c_methtot_org_carbwater_content_soil
water_content_soil_meth
63
KOME-1high quality draft genome of strain KOME-1Longilinea arvoryzae360412PRJDB4023LARVKOME-12013
cropland biome
paddy fieldpaddy field soilJapan:Niigata, Nagaokamissing
Genome analysis of Anaerolineaceae species
1791130117911301missing0.10 m60 m
64
KOME-2high quality draft genome of strain KOME-2Longilinea arvoryzae360412PRJDB4023LARWKOME-22013
cropland biome
paddy fieldpaddy field soilJapan:Niigata, Nagaokamissing
Genome analysis of Anaerolineaceae species
1791130117911301missing0.10 m60 m
65
66
MIGS.ba.wastewater
67
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idlocus_tag_prefixstrainbreed
cultivar
isolate
labelbiomaterial_provider
*collection_date
*env_biome*env_feature*env_material*geo_loc_name*lat_lon*project_name*isol_growth_condt
*ref_biomaterial
*num_repliconsestimated_size
biotic_relationship
encoded_traits
extrachrom_elements
health_disease_stat
hosthost_spec_rangepathogenicityrel_to_oxygen
samp_collect_device
samp_mat_process
sample_size
source_material_id
subspecf_gen_lintrophic_leveldepthalkalinity
biochem_oxygen_dem
chem_administration
chem_oxygen_dem
efficiency_percentemulsions
gaseous_substances
indust_eff_percent
inorg_particlesmisc_paramnitrateorg_particlesorganism_countoxy_stat_sampperturbationphphosphatepre_treatment
primary_treatment
reactor_type
samp_salinity
samp_store_dur
samp_store_loc
samp_store_temp
secondary_treatment
sewage_type
sludge_retent_time
sodiumsoluble_inorg_matsoluble_org_matsuspend_solidstemptertiary_treatmenttot_nitrotot_phosphatewastewater_type
68
Alicycliphilus sp.Alicycliphilus sp. B1 isolated from activated sludgeAlicycliphilus sp. B11603291PRJDB3450ALISPB12016missing
industrial wastewate treatment plant
activated sludgeJapan:Tochigimissing
Genome sequence of bacterial isolate from activated sludge
missingmissing1
69
70
MIGS.eu
71
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idlocus_tag_prefixstrainbreed
cultivar
isolate
labelbiomaterial_provider
*collection_date
*env_biome*env_feature*env_material*geo_loc_name*lat_lon*project_name*isol_growth_condt
ref_biomaterial
*num_replicons*estimated_size*ploidy*propagation
biotic_relationship
extrachrom_elements
health_disease_stat
hosthost_spec_rangepathogenicity
samp_collect_device
samp_mat_process
sample_size
source_material_id
subspecf_gen_lintrophic_level
72
Nipponbare WT-1-PG0219Oryza sativa L. ssp. japonica cv. Nipponbare WT-1-PG0219Oryza sativa Japonica Group39947
Nipponbare
2013-06
cropland biome
paddy fieldnot applicableJapan:Niigata37.11 N 138.27 E
Comparative analysis of transformed and wild-type rice genome.
1737273512380000000 bpdiploidsexual
73
Nipponbare WT-1-PG0361Oryza sativa L. ssp. japonica cv. Nipponbare WT-1-PG0361Oryza sativa Japonica Group39947
Nipponbare
2013-06
cropland biome
paddy fieldnot applicableJapan:Niigata37.11 N 138.27 E
Comparative analysis of transformed and wild-type rice genome.
1737273512380000000 bpdiploidsexual
74
75
MIGS.eu.plant-associated
76
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idlocus_tag_prefixstrainbreed
cultivar
isolate
labelbiomaterial_provider
*collection_date
*env_biome*env_feature*env_material*geo_loc_name*lat_lon*project_name*isol_growth_condt
ref_biomaterial
*num_replicons*estimated_size*ploidy*propagation
biotic_relationship
extrachrom_elements
health_disease_stat
*hosthost_spec_rangepathogenicity
samp_collect_device
samp_mat_process
sample_size
source_material_id
subspecf_gen_lintrophic_leveldepthelevaltitudeage
air_temp_regm
antibiotic_regm
body_product
chem_administration
chem_mutagen
climate_environment
dry_mass
fertilizer_regm
fungicide_regm
gaseous_environment
genotypegravity
growth_hormone_regm
growth_med
height_or_length
herbicide_regm
host_common_name
host_disease_stat
host_taxidhumidity_regm
infra_specific_name
infra_specific_rank
life_stage
mechanical_damage
mineral_nutr_regm
misc_param
non_mineral_nutr_regm
organism_countoxy_stat_sampperturbationpesticide_regmph_regmphenotypeplant_body_siteplant_productradiation_regmrainfall_regmsalt_regmsamp_salinitysamp_store_dursamp_store_locsamp_store_temp
season_environment
standing_water_regm
temp
tiss_cult_growth_med
tot_masswater_temp_regmwatering_regmwet_mass
77
IPU010Ustilaginoidea virens Takahashi IPU010Ustilaginoidea virens1159556UVIIPU010
National Institute of Agrobiological Sciences, Japan
missing
cropland biome
agricultural terracemissingJapan:Shiganot collected
Ustilaginoidea virens Takahashi IPU010 genome project
missingmissing31446769 bpmissingmissing
Oryza sativa Indica group
78
79
MIGS.vi.human-associated
80
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idstrainbreedcultivarisolatelabel
biomaterial_provider
*collection_date*env_biome*env_feature*env_material*geo_loc_name*lat_lon*project_name*isol_growth_condtref_biomaterial
num_replicons
estimated_size*propagation
biotic_relationship
encoded_traits
health_disease_stat
*host
host_spec_range
pathogenicity
samp_collect_device
samp_mat_process
sample_size
source_material_id
subspecf_gen_linage
amniotic_fluid_color
blood_blood_disord
body_mass_index
body_productchem_administration
diet_last_six_month
drug_usage
family_relationship
foetal_health_stat
genotypegestation_statehiv_stathost_body_site
host_body_temp
host_diet
host_disease_stat
host_heighthost_subject_idihmc_ethnicity
ihmc_medication_code
kidney_disordlast_meal
maternal_health_stat
medic_hist_perform
misc_param
nose_throat_disord
occupationorganism_count
oxy_stat_samp
perturbation
pet_farm_animal
phenotypepulmonary_disordpulsesamp_salinitysamp_store_dursamp_store_locsamp_store_tempsexsmokerstudy_complt_stattemptot_mass
travel_out_six_month
twin_siblingurine_collect_meth
urogenit_tract_disor
weight_loss_3_month
81
0001_indonesia_controlDengue virus from Control sampleLAMP product sequneces of the four dengue serotypesDengue virus126372012/2015missingmissingbloodIndonesiamissingSerotyping Dengue virus using an isothermal amplification and a portable sequencermissing111kmissinghealthyHomo sapiens
82
0002_indonesia_single_sampleDengue virus from Indonesian single clinical sampleLAMP product sequneces of the Indonesian clinical samplesDengue virus126372012/2015missingmissingbloodIndonesiamissingSerotyping Dengue virus using an isothermal amplification and a portable sequencermissing111kmissingfeverHomo sapiens
83
84
MIMARKS.specimen
85
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idstrainbreedcultivarisolatelabel
biomaterial_provider
*collection_date*env_biome*env_feature*env_material*geo_loc_name*lat_lon*project_name*isol_growth_condtbiotic_relationship
extrachrom_elements
rel_to_oxygen
samp_collect_device
samp_mat_process
sample_size
source_material_id
subspecf_gen_lintrophic_level
86
StAf_01Strobilomyces confusus E38Strobilomyces confusus374762PRJDB4146E382004-08-15
temperate woodland biome
forestnot applicableUSA: New Jersey40.0 N 74.83 WDiversification analysis of Strobilomyces and Afroboletusnot provided
87
StAf_02Strobilomyces pterosporus E52MycoBank ID: 112101Afroboletus pterosporus1712121PRJDB4146E521978-06-06
tropical woodland biome
forestnot applicableNigeria7.5 N 4.56 EDiversification analysis of Strobilomyces and Afroboletusnot provided
88
StAf_03Strobilomyces luteolus K2Strobilomyces luteolus1611890PRJDB4146K21976-01
tropical woodland biome
forestnot applicableZimbabwe17.81 S 31.05 EDiversification analysis of Strobilomyces and Afroboletusnot provided
89
90
MIMARKS.survey.host-associated
91
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idstrainbreedcultivarisolatelabel
biomaterial_provider
*collection_date*env_biome*env_feature*env_material*geo_loc_name*lat_lon*project_name*hostrel_to_oxygen
samp_collect_device
samp_mat_processsample_sizedepthelevaltitudeage
blood_press_diast
blood_press_systbody_habitatbody_product
chem_administration
dry_massfamily_relationshipgenotypegravidity
height_or_length
host_body_site
host_body_temp
host_color
host_common_name
host_diethost_disease_stat
host_growth_cond
host_shapehost_subject_idhost_taxid
infra_specific_name
infra_specific_rank
last_meallife_stagemisc_param
organism_count
oxy_stat_sampperturbationphenotype
samp_salinity
samp_store_dur
samp_store_loc
samp_store_temp
sexsubstratetemptot_mass
host_sex
92
D14F1Fecal sample from intestinal epithelial cell-specific alpha-mannosidase II deficient mouse F1mouse gut metagenome4106612016-08-09
not applicable
not applicablefecesnot applicablenot applicable
16S amplicon sequence analysis of gut microbiome in intestinal epithelial cell-specific alpha-mannosidase II deficient mice
Mus musculusF1
female
93
D14F3Fecal sample from control mouse F3mouse gut metagenome4106612016-08-09
not applicable
not applicablefecesnot applicablenot applicable
16S amplicon sequence analysis of gut microbiome in intestinal epithelial cell-specific alpha-mannosidase II deficient mice
Mus musculusF3
female
94
D14M1Fecal sample from control mouse M1mouse gut metagenome4106612016-08-09
not applicable
not applicablefecesnot applicablenot applicable
16S amplicon sequence analysis of gut microbiome in intestinal epithelial cell-specific alpha-mannosidase II deficient mice
Mus musculusM1male
95
D14M2Fecal sample from intestinal epithelial cell-specific alpha-mannosidase II deficient mouse M2mouse gut metagenome4106612016-08-09
not applicable
not applicablefecesnot applicablenot applicable
16S amplicon sequence analysis of gut microbiome in intestinal epithelial cell-specific alpha-mannosidase II deficient mice
Mus musculusM2male
96
97
MIMARKS.survey.human-associated
98
*sample_name*sample_titledescription*organismtaxonomy_idbioproject_idstrainbreedcultivarisolatelabel
biomaterial_provider
*collection_date*env_biome*env_feature*env_material*geo_loc_name*lat_lon*project_name*hostrel_to_oxygen
samp_collect_device
samp_mat_processsample_sizeage
amniotic_fluid_color
blood_blood_disord
body_mass_index
body_product
chem_administration
diet_last_six_month
drug_usage
family_relationship
foetal_health_stat
genotype
gestation_state
hiv_stat
host_body_site
host_body_temp
host_diethost_disease_stathost_height
host_subject_id
ihmc_ethnicity
ihmc_medication_code
kidney_disordlast_meal
maternal_health_stat
medic_hist_perform
misc_param
nose_throat_disordoccupation
organism_count
oxy_stat_sampperturbation
pet_farm_animal
phenotype
pulmonary_disord
pulse
samp_salinity
samp_store_dur
samp_store_loc
samp_store_temp
sexsmoker
study_complt_stat
temptot_mass
travel_out_six_month
twin_siblingurine_collect_meth
urogenit_tract_disor
weight_loss_3_month
99
C116S rRNA genes amplified from genomic DNA isolated from tear fluid of healthy subject (C1)human metagenome646099PRJDB39402009
not applicable
not applicabletearsJapan:Tokyo, Minato-ku35.65 N 139.74 EComprehensive analysis of microbes in human tear fluidsHomo sapienshealthyC1
100
C216S rRNA genes amplified from genomic DNA isolated from tear fluid of healthy subject (C2)human metagenome646099PRJDB39402009
not applicable
not applicabletearsJapan:Tokyo, Minato-ku35.65 N 139.74 EComprehensive analysis of microbes in human tear fluidsHomo sapienshealthyC2
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