ABCDE
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TypeResource linkComment
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NTX
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Awesome BCIhttps://github.com/NeuroTechX/awesome-bci
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NTX EEG Notebookshttps://neurotechx.github.io/eeg-notebooks/
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NTX MOABB - Mother of All BCI Benchmarkshttps://moabb.neurotechx.com/docs/
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NeuroTech Microcredential Programhttps://neuroscience.queensu.ca/academic/microcredentials
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The NeuroTechX Education Platformhttps://neurotechedu.com/
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NeuroTechX Webinarshttps://neurotechx.com/webinars/
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NeuroTechX Content Lab (on Medium)https://medium.com/neurotechx
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The NeuroTech Primer (Book)https://neurotechx.com/primer/
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Resources
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NameLinkComment
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NeuroStarshttps://neurostars.org
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NITRChttps://nitrc.orgNeuroImaging Tools and Resource Collaboratory
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Neuroscience Gatewayhttps://nsgportal.orgSan Diego Supercomputer portal with Neuroscience applications
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Neurodeskhttps://neurodesk.orgFull featured Neurodesktop
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Brainlifehttps://brainlife.io
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Canadian Open Neuroscience Platformhttps://conp.ca
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Neurohubhttps://neurohub.caCanadian Computational Resource
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ModelDBhttps://senselab.med.yale.edu/ModelDB/
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eBrainshttps://ebrains.eu/
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Brainhack Cloudhttps://brainhack.org/brainhack_cloudCloud-backend for Neurodesk from brainhack
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Neurodebianhttps://neuro.debian.orgNeuroscience applications for Debian based GNU/Linux
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Neurofedorahttps://neuro.fedoraproject.org
Neuroscience applications for Fedora based GNU/Linux
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Overview of MNE Toolshttps://mne.tools/stable/install/mne_tools_suite.htmlAn overview of the MNE Ecosystem
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ReproNimhttps://www.repronim.org/
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eBrains HealthDataCloudhttps://ebrains.eu/news/ebrains-healthdatacloud-tackling-the-sensitive-data-challenge-brain-research/
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Neurorobotics Platformhttps://neurorobotics.net
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ENIGMA-Brainage modelhttps://photon-ai.com/enigma_brainage
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Tools
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NameLinkComment
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Dataladhttps://datalad.orgKeep code, data, containers under control with git and git-annex
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Brainflowhttps://brainflow.orgOpen source acquisition and processing library
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PsychoPyhttps://psychopy.orgExperimental control in Python
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Timefluxhttps://timeflux.ioAcquisition and real-time processing
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Scikit-Learnhttps://scikit-learn.org/stable/index.htmlMachine learning toolbox
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MNE-Pythonhttps://mne.tools/stable/index.htmlMNE Python - Analysis tools
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MNE-BIDShttps://mne.tools/mne-bids/stable/index.html
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MNELABhttps://mnelab.readthedocs.io/en/latest/EEG GUI Viewer
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MNE-NIRShttps://mne.tools/mne-nirs/stable/index.html
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Braindecodehttps://braindecode.orgBraindecode
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fooofhttps://github.com/fooof-tools/fooofFitting oscillations & one over f
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neurodsphttps://github.com/neurodsp-tools/neurodspDigital signal processing algorithms
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endhttps://emd.readthedocs.io/en/stable/
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SimNIBShttps://simnibs.github.io/simnibs/build/html/index.html
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nwbhttps://nwb.orgNeurodata Without Borders
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lfpyhttps://lfpy.readthedocs.io/en/latest/readme.html
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The Virtual Brainhttps://www.thevirtualbrain.org/tvb/zwei
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neurolibhttps://caglorithm.github.io/notebooks/neurolib-intro/
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BrainStormhttps://neuroimage.usc.edu/brainstorm/Introduction
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EEGLABhttps://sccn.ucsd.edu/eeglab/index.phpMATLAB Toolbox for ERP/ERSP Analysis
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FieldTriphttps://www.fieldtriptoolbox.org/MATLAB Toolbox for ERP/ERSP Analysis
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PyGazehttps://www.pygaze.orghttps://github.com/ardkastrati/EEGEyeNet
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PyRiemannhttps://pyriemann.readthedocs.io/en/latest/Riemannian geometry for bio signal machine learning
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autorejecthttps://autoreject.github.io/stable/index.html#Automated rejection tool
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systolehttps://embodied-computation-group.github.io/systole/#ECG processing tool
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LUNAhttps://zzz.bwh.harvard.edu/luna/Sleep scoring software
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EDF Browserhttps://www.teuniz.net/edfbrowser/Cross-platform GUI Viewer
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MNECPPhttps://mne-cpp.github.ioQt GUI tools for acquisition and realtime processing
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OpenViBEhttp://openvibe.inria.fr/Create BCI through visual programming (signal acquisition, processing, classification, feedback), available on Windows and Linux
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Connectome Mapper 3 https://connectome-mapper-3.readthedocs.io/en/latest/
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Gits
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NameLinkComment
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Neuromatch Academy https://github.com/NeuromatchAcademycourse to start up in Neural Data Analysis
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EEGEduhttps://github.com/kylemath/EEGEdu
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PyMNE.jlhttps://github.com/beacon-biosignals/PyMNE.jl
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EDF.jlhttps://github.com/beacon-biosignals/EDF.jl
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MEEG ML Benchmarks https://github.com/meeg-ml-benchmarks/meeg-brain-age-benchmark-paperMEEG Brain Age prediction benchmarks from Resting EEG datasets (Engemann et al. 2022)
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IBM Seizure Pipelinehttps://github.com/IBM/seizure-type-classification-tuh
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MNE BIOMAG 2016 Group Analysishttps://github.com/mne-tools/mne-biomag-group-demoExample Group Analysis of MEG Dataset
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DeepEEGhttps://github.com/kylemath/DeepEEGTensorflow DL of EEG-notebooks data
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BrainPadhttps://github.com/CrisSherban/BrainPad
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wav2vechttps://github.com/facebookresearch/fairseq/tree/main/examples/wav2vec
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Brains at Playhttps://github.com/brainsatplayPublic biomedical infrastructure on the Open Web.
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Timefluxhttps://github.com/timeflux/demosEnd-to-end BCI demos with code
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EEG-Transformerhttps://github.com/anranknight/EEG-Transformer
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EEG Synthhttps://github.com/eegsynth/eegsynth
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NeuroIDSS EEG GAN Audio Videohttps://github.com/neuroidss/EEG-GAN-audio-video
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HyPyPhttps://github.com/ppsp-team/HyPyPHyperscanning analysis toolbox
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Rhythms of Relatinghttps://github.com/RhythmsOfRelating/HybridHarmonyHyperscanning acquisition toolbox
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Fastballhttps://osf.io/r5tns/#!
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PsychRNNhttps://psychrnn.readthedocs.io/en/latest/
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PyDDMhttps://github.com/mwshinn/PyDDM
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NeuroMapshttps://github.com/netneurolab/neuromaps
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Diffusion Brainhttps://huggingface.co/spaces/Warvito/diffusion_brain
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DiffRollhttps://sony.github.io/DiffRoll/
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COINSTAChttps://github.com/trendscenter/coinstac
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Tutorials
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NameLinkComment
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Methods for Analyzing Neural Oscillations and Aperiodic Activity SPR 2022 Pre-Conference Workshophttps://github.com/voytekresearch/spr2022
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Neurotech Challengehttps://neurotech-challenge.com/Use eeg-notebooks to collect data from yourself and contribute to a crowdsourced dataset
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ERP Core N400 preprocessing in MNE-Pythonhttps://msilvestrin.me/post/n400_1/
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ERP Core processing with mne-bids-pipeline https://mne.tools/mne-bids-pipeline/examples/ERP_CORE.html
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Download NSRR data directly into Rhttps://sleepdata.org/blog/2019/03/download-from-the-nsrr-directly-through-r
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PsychoPy experimentshttps://workshops.psychopy.org/tutorials/index.html