Ticket #4853 - Review annotations to some intracellular signaling terms

	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P	Q
1	Suggested action (by annotation review requester)	COMMENT (FIXED /OK) - by Contributor	Git handle of respondent	assigned_by	bioentity	bioentity_label	reference	qualifier	annotation_class	annotation_class_label	evidence_type	evidence_with	bioentity_isoform	panther_family	date	annotation_extension_class	taxon

2	Replace by GO:0033209 tumor necrosis factor-mediated signaling pathway	Changed	rlovering	BHF-UCL	UniProtKB:Q9Y6Q6	TNFRSF11A	PMID:18606301		GO:0071847	TNFSF11-mediated signaling pathway	IMP			PANTHER:PTHR47134	20101213		NCBITaxon:9606
3	Replace by GO:0033209 tumor necrosis factor-mediated signaling pathway	Changed	rlovering	BHF-UCL	UniProtKB:O14788	TNFSF11	PMID:18606301		GO:0071847	TNFSF11-mediated signaling pathway	IDA			PANTHER:PTHR11471	20110110		NCBITaxon:9606
4	Replace by positive regulation of ERK1 and ERK2 cascade part of GO:0033209 tumor necrosis factor-mediated signaling pathway	Changed	rlovering	BHF-UCL	UniProtKB:Q9Y6Q6	TNFRSF11A	PMID:18606301		GO:0071848	positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling	IMP			PANTHER:PTHR47134	20101213		NCBITaxon:9606
5	Replace by positive regulation of ERK1 and ERK2 cascade part of GO:0033209 tumor necrosis factor-mediated signaling pathway	Changed	rlovering	BHF-UCL	UniProtKB:O14788	TNFSF11	PMID:18606301		GO:0071848	positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling	IDA			PANTHER:PTHR11471	20110110		NCBITaxon:9606
6	Replace by intracellular signal transduction	Changed	rlovering	BHF-UCL	MGI:MGI:1932386	Ift122	PMID:21209331\|MGI:MGI:4888042		GO:0007227	signal transduction downstream of smoothened	IMP			PANTHER:PTHR12764	20140317		NCBITaxon:10090
7	Remove; this is not shown in the paper	Removed	linimgi	MGI	MGI:MGI:98496	Tbxa2r	PMID:1375456		GO:0019932	second-messenger-mediated signaling	IDA			PANTHER:PTHR11866	20070126		NCBITaxon:10090
8		Changed	linimgi	MGI	MGI:MGI:1913126	Pias3	PMID:17442941		GO:0071847	TNFSF11-mediated signaling pathway	IDA			PANTHER:PTHR10782	20180222		NCBITaxon:10090
9	Replace by GO:0033209 tumor necrosis factor-mediated signaling pathway	Changed	linimgi	MGI	MGI:MGI:1100089	Tnfsf11	PMID:17442941		GO:0071847	TNFSF11-mediated signaling pathway	IDA			PANTHER:PTHR11471	20180222		NCBITaxon:10090
10	Replace by GO:0033209 tumor necrosis factor-mediated signaling pathway	Changed	linimgi	MGI	MGI:MGI:1100089	Tnfsf11	PMID:18269914		GO:0071847	TNFSF11-mediated signaling pathway	IDA			PANTHER:PTHR11471	20151028		NCBITaxon:10090
11	Replace by GO:0010804 negative regulation of tumor necrosis factor-mediated signaling pathway ?	Changed	linimgi	MGI	MGI:MGI:1929209	Cldn18	PMID:22437732		GO:0071847	TNFSF11-mediated signaling pathway	IMP	MGI:MGI:5007067		PANTHER:PTHR12002	20151021		NCBITaxon:10090
12	Replace by GO:0010804 negative regulation of tumor necrosis factor-mediated signaling pathway ?	Changed	linimgi	MGI	MGI:MGI:1341872	Tjp2	PMID:22437732		GO:0071847	TNFSF11-mediated signaling pathway	IMP			PANTHER:PTHR13865	20151021		NCBITaxon:10090
13	Replace by GO:0033209 tumor necrosis factor-mediated signaling pathway	Changed	linimgi	MGI	MGI:MGI:1100089	Tnfsf11	PMID:22437732		GO:0071847	TNFSF11-mediated signaling pathway	IDA			PANTHER:PTHR11471	20151021		NCBITaxon:10090
14	Remove, already annotated to lipopolysaccharide-mediated signaling pathway	Changed	linimgi	MGI	MGI:MGI:2385852	Tifab	PMID:26458771		GO:0038008	TRAF-mediated signal transduction	IMP	MGI:MGI:5911664		PANTHER:PTHR31266	20221025	MGI:MGI:108072	NCBITaxon:10090
15	Replace by regulation of tumor necrosis factor-mediated signaling pathway	Changed	linimgi	MGI	MGI:MGI:894663	Ext1	PMID:29415886		GO:0071847	TNFSF11-mediated signaling pathway	IMP			PANTHER:PTHR11062	20200506		NCBITaxon:10090
16	Remove, this is a target of the signaling pathway (" cAMP has a stimulatory effect on pancreatic glucokinase gene expression ")	Removed	slaulederkind	RGD	RGD:2670	Gck	PMID:11250924\|RGD:628440		GO:0019932	second-messenger-mediated signaling	IDA			PANTHER:PTHR19443	20050217		NCBITaxon:10116
17	Changed to positive regulation of canonical NF-kappaB signal transduction	Changed	pgaudet	UniProt	MGI:MGI:2140219	Lrrc19	PMID:26776522\|MGI:MGI:6204559		GO:0038008	TRAF-mediated signal transduction	IMP			PANTHER:PTHR31450	20200107		NCBITaxon:10090
18	Change to ' GO:0043950 positive regulation of cAMP-mediated signaling'	Removed	vanaukenk	WB	WB:WBGene00001450	flp-7	PMID:11087928\|WB_REF:WBPaper00004457		GO:0019932	second-messenger-mediated signaling	IDA			PANTHER:PTHR20986	20041019		NCBITaxon:6239
19	Remove, already annotated to 'positive regulation of smoothened signaling pathway'	Removed	sramachand	ZFIN	ZFIN:ZDB-GENE-030131-760	ip6k2a	PMID:20980661		GO:0007227	signal transduction downstream of smoothened	IMP	ZFIN:ZDB-MRPHLNO-101201-2\|ZFIN:ZDB-MRPHLNO-101201-3		PANTHER:PTHR12400	20110805		NCBITaxon:7955
20	Remove, already annotated to 'positive regulation of smoothened signaling pathway'	Removed	sramachand	ZFIN	ZFIN:ZDB-GENE-030131-760	ip6k2a	PMID:20980661		GO:0007227	signal transduction downstream of smoothened	IMP	ZFIN:ZDB-MRPHLNO-101201-4		PANTHER:PTHR12400	20110805		NCBITaxon:7955
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