Proteomic Schedule - 2016.xlsx
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Proteomics 2016 Aug. 1 - 5
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August 1st
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Monday
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TimeTopicSpeakerRoom
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7:30 - 8:00Check-in & WelcomeDr. Judy Kjelstrom, UCD Biotechnology ProgramGBSF - 1005
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8:00 - 9:30Introduction to ProteomicsDr. Brett Phinney, UCD Genome Center Proteomics CoreGBSF - 1005
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9:30 - 10:00Intro to Todays LabMichelle Salemi , UCD Genome Center Proteomics CoreGBSF -1402
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10:00 - 10:15BreakSponsored by RaininGBSF - 1005
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10:15 - 12:00In-gel and In Solution Digestion Bovine LiverMichelle Salemi & Dr. Anthony Herren, UCD Genome Center Proteomics CoreGBSF -1402
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Lunch
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1:00 - 2:45Bovine Liver Protein Extraction, Protein BCA Quantification, and PrecipitationMichelle Salemi & Dr. Anthony Herren, UCD Genome Center Proteomics CoreGBSF -1402
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2:45 - 3:00BreakSponsored by Thermo Fisher ScientificGBSF - 1005
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3:00 - 4:00Bovine Liver Protein Extraction, Protein BCA Quantification, and PrecipitationMichelle Salemi & Dr. Anthony Herren, UCD Genome Center Proteomics CoreGBSF -1402
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4:00 - 5:00Intro to Mass SpectrometryDr. Brett Phinney, UCD Genome Center Proteomics CoreGBSF - 1005
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5:15Adjourn
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My Proteomic Notes:
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LectureLab
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Proteomics 2016 August 1-5
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August 2nd
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Tuesday
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TimeTopicSpeakerRoom
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8:00 - 9:45In-gel Digestion Extraction. In solution Digestion Clean Up.Michelle Salemi & Dr. Anthony Herren, UCD Genome Center Proteomics CoreGBSF -1402
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9:45 - 10:00BreakSponsored by Proteome SoftwareGBSF - 1005
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10:00 - 11:00Finish up In Solution Digestions. SPE CleanupMichelle Salemi & Dr. Anthony Herren, UCD Genome Center Proteomics CoreGBSF -1402
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11:00 - 12:00Practical Applications of Protein and Peptide HPLC for ProteomicsKerry Nugent, President WarpLCMSGBSF - 1005
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Lunch
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1:00 - 2:00Proteomics in Epigenetic Research: Using all the Tools at your DisposalDr. David Arnott, Sr. Scientist, Protein Chemistry Dept., Genentech Inc.GBSF - 1005
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2:00 - 3:00Separations Lab /Break groups alternateKerry Nugent, President WarpLCMSGBSF -1402
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3:00 - 3:15BreakSponsored by Thermo Fisher ScientificGBSF - 1005
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3:15 - 5:00Phospho enrichmentDr. Anthony Herren, UCD Genome Center Proteomics Core UCD Proteomics Core StaffGBSF -1402
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5:00Adjourn
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My Proteomic Notes:
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LectureLab
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Proteomics 2016 August 1-5
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August 3rd
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Wednesday
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TimeTopicSpeakerRoom
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8:00 - 9:00Introduction to Protein IDDr. Brett Phinney, UCD Genome Center Proteomics CoreGBSF - 1005
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9:00 - 9:45PresentationDr. Danielle LemayGBSF - 1005
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9:45 - 10:00
BreakSponsored by GoldBioGBSF - 1005
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10:00 - 11:00Protein profiling in corneocytes of hair, nail and epidermisDr. Robert Rice, UC Davis Environmental ToxicologyGBSF - 1005
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11:00 - 12:00The Highs and Lows in Proteomic AnalysisDr. Dave QuiliciGBSF - 1005
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Lunch
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1:00 - 2:00Looking at and Converting Raw DataDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2020
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2:00 - 3:00Protein Identification Lab X! TandemDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2020
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3:00 - 3:15BreakSponsored by Thermo Fisher ScientificSLB - 2064
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3:15 - 4:15Quantitative Mass Spectrometry and all it's flavorsIman Mohtashemi, Thermo Fisher ScientificSLB - 2020
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4:15 - 5:15Data AnalysisDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2020
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5:15Adjourn
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My Proteomic Notes:
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LectureLab
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Proteomics 2015 August 1-5
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August 4th
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Thursday
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TimeTopicSpeakerRoom
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8:00 - 9:45Protein ID and Spectral Counting ExerciseDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2020
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9:45 - 10:00BreakSLB - 2064
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10:00 - 12:00Introduction to Protein Quantitation and Advanced quantitation topicsDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2020
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Lunch
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1:00 - 2:00Statistical Concepts Relevant to Proteomics Data AnalysisDr. Blythe Durbin-Johnson, UC Davis Principal StatisticianSLB - 2020
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2:00- 2:45InformaticsDr. Ryan Leib, Ph.D., Staff Scientist-Protein Bioinformatics, Vincent Coates Foundation Mass Spectrometry Lab, StanfordSLB - 2020
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2:45 - 3:00BreakSponsored by Thermo Fisher ScientificSLB - 2064
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3:00 - 5:00De novo SequencingMichelle Salemi, UC Davis Genome Center Proteomics CoreSLB - 2020
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5:00Adjourn
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My Proteomic Notes:
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LectureLab
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Proteomics 2016 August 1-5
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August 5th
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Friday
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TimeTopicSpeakerRoom
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8:00-9:00Data AnalysisDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2020
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9:00-10:00GlycoproteomicsDr. Marshall BernSLB - 2020
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10:00-10:15BreakSLB - 2064
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10:15-12:00Enrichment and analysis of PTMsDr. Anthony Herren, UCD Genome Center Proteomics CoreSLB - 2020
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Lunch
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1:00-2:00Protein IdentificationDr. Robert Chalkley, Associate Adjunct Professor, NIGMS Mass Spectrometry Facility & Dept. Pharmaceutical Chemistry, UCSFSLB - 2020
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2:00-2:45De novo Quiz Results and QuestionsMichelle Salemi, UC Davis Genome Center Proteomics CoreSLB - 2020
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2:45-3:00BreakSponsored by Thermo Fisher ScientificSLB - 2064
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3:00-4:00Data Analysis Wrap up in Computer LabDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2020
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4:00Final Remarks and CertificatesDr. Judy Kjelstrom, UCD Biotech Program, Dr. Brett Phinney, UCD Proteomics Facility
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My Proteomic Notes:
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Schedule