| A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z | AA | AB | AC | AD | ||
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1 | Faculty (PI) | PI Website | Institution | Research areas | Program (PhD unless noted) | Website | Needed background | Program Notes | 2020 Deadline | Other Program Faculty of Interest | Program contact | RosettaCommons Student Contact | |||||||||||||||||||
2 | Amelie Stein | https://scholar.google.com/citations?user=eH6qiFsAAAAJ&hl=en | University of Copenhagen, Denmark | Structural computational biology, protein stability & degradation | Biology | Biochemistry, molecular biology, biophysics, nanoscience - typically MSc level required, or BSc + research experience | Direct admit, no rotations; PhD program is 3 years | amelie.stein@bio.ku.dk | |||||||||||||||||||||||
3 | Bill Schief | https://www.scripps.edu/faculty/schief/ | Scripps Research | Vaccine design, protein design, directed evolution, antibodies, HIV, influenza, malaria, ebola, cancer | Scripps | Interdisciplinary | 2-3 rotations in first year | ||||||||||||||||||||||||
4 | Birte Höcker | www.proteindesign.uni-bayreuth.de/en/ | Universitat Bayreuth, Germany | Evolution & design of protein folds, ligand binding, enzyme engineering | BayNAT (Molecular Biosciences) | www.baynat.uni-bayreuth.de/en/ | biochemistry preferred | anytime | |||||||||||||||||||||||
5 | Brian Kuhlman | http://klab.web.unc.edu/ | UNC Chapel Hill | Protein design, vaccine design for dengue virus, light-activatable proteins, protein therapeutics/antibodies | BBSP (Biological & Biomedical Sciences Program): Includes Molecular Biophysics and Computational Biology Programs | https://bbsp.unc.edu/ | 3 rotations in first year (with option for summer rotation), stipend/fees (all years) paid by program/ lab | 12/4 | |||||||||||||||||||||||
6 | Brian Pierce | piercelab.ibbr.umd.edu | University of Maryland | Protein docking, protein design, vaccine design, immune recognition | Biological Sciences | bisi.umd.edu | Interdisciplinary, biology | 3 rotations in first year | 12/1 | Charles Delwiche (Program Director) | Johnathan Guest | ||||||||||||||||||||
7 | Brian Pierce | piercelab.ibbr.umd.edu | University of Maryland | Protein docking, protein design, vaccine design, immune recognition | Program in Virology | http://simona065.wixsite.com/umd-virology-program | Virology | NIH training program, available to UMD Biological Science students and others | 12/1 | Anne Simon (Program Director) | Johnathan Guest | ||||||||||||||||||||
8 | Bruno Correia | https://lpdi.epfl.ch/ | Ecole Polytechnique Federale de Lausanne | Protein design, synthetic biology, vaccine design, de novo design | Computational Biology | https://www.epfl.ch/education/phd/programs/edcb-computational-and-quantitative-biology/ | Interdisciplinary, focus on computational and quantitative biology | no rotations - straight to business | https://www.epfl.ch/education/phd/programs/edcb-computational-and-quantitative-biology/edcb-how-to-apply/ | Matteo Dal Peraro (Program Director) | Freyr Sverrisson | ||||||||||||||||||||
9 | Bruno Correia | https://lpdi.epfl.ch/ | Ecole Polytechnique Federale de Lausanne | Protein design, synthetic biology, vaccine design, de novo design | Bioengineering and Biotechnology | https://phd.epfl.ch/EDBB | Interdisciplinary, focus on engineering | no rotations - straight to business | https://phd.epfl.ch/cms/site/phd/lang/en/deadlines | Georg Fantner(Program Director) | Fabian Sesterhenn | ||||||||||||||||||||
10 | Byung-Ha Oh | https://sites.google.com/view/tpdsb/home | Korea Advanced Institute of Science and Technology | Therapeutic protein design, Structural biology | Biological Sciences | https://bio.kaist.ac.kr/ | Biology | 3 rotations in first semester, stipend/fees (all years) paid by TA/lab | iskang@kaist.ac.kr | Bo-Seong Jeong, Seonghoon Kim | |||||||||||||||||||||
11 | Colin Smith | smithlab.wesleyan.edu | Wesleyan University | Protein dynamics, protein design, allostery, NMR | Chemistry | http://www.wesleyan.edu/chem/graduates/ | Chemistry, Biochemistry | 3 rotations in first semester, stipend/fees (all years) paid by TA/lab | 1/1 | Erika Taylor, Alison O'Neil, Carlos Jimenez Hoyos | Brian Northrop (Program Director) | Josh Dudley, Kat Blejec | |||||||||||||||||||
12 | Colin Smith | smithlab.wesleyan.edu | Wesleyan University | Protein dynamics, protein design, allostery, NMR | Molecular Biology & Biochemistry | http://www.wesleyan.edu/mbb/grad_studies/ | Biochemistry, Biology | 2 rotations in first year, stipend/fees (all years) paid by TA/lab | 1/1 | Ishita Mukerji, Don Oliver, Rich Olson | Scott Holmes (Program Director) | Meagan MacDonald | |||||||||||||||||||
13 | Dan Kulp | https://wistar.org/our-scientists/daniel-kulp | U Penn | Computational and experimental vaccine/antibody/immune modulator design | Bioengineering | http://www.be.seas.upenn.edu/ | Biochemistry, Biophysics, Comp. Sci. | 12/15 | Ravi Radhakrishnan, Scott L. Diamond, Andrew Tsourkas | ||||||||||||||||||||||
14 | Dan Kulp | https://wistar.org/our-scientists/daniel-kulp | U Penn | Computational and experimental vaccine/antibody/immune modulator design | Microbiology, Virology, and Parasitology | https://www.med.upenn.edu/camb/mvp.shtml | Immunology, Virology | 12/15 | James Wilson, John Wherry, Carl June | ||||||||||||||||||||||
15 | Dan Kulp | https://wistar.org/our-scientists/daniel-kulp | Wistar Institute | Computational and experimental vaccine/antibody/immune modulator design | Vaccine & Immunotherapy Center | https://wistar.org/research-discoveries/vaccine-immunotherapy-center | Structural biology, immunology, bioengineering | - | David Weiner, Luis J. Montaner | ||||||||||||||||||||||
16 | David Baker | http://www.bakerlab.org/ | University of Washington, Seattle | Protein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder design | Biochemistry | https://depts.washington.edu/biowww/pages/graduate-application.shtml | Background in biology, chemistry or biochemistry | 3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. | 12/2 | Neil King, Frank DiMaio | Erin Kirschner kirsche@uw.edu | Brian Koepnick: koepnick@uw.edu | |||||||||||||||||||
17 | David Baker | http://www.bakerlab.org/ | University of Washington, Seattle | Protein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder design | BPSD | http://depts.washington.edu/bpsd/ | Backgound in biology, physical sciences, or mathematics. | 3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. | 12/2 | Neil King, Frank DiMaio | Erin Kirschner kirsche@uw.edu | Brian Koepnick: koepnick@uw.edu | |||||||||||||||||||
18 | David Baker | http://www.bakerlab.org/ | University of Washington, Seattle | Protein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder design | MCB | http://mcb-seattle.edu/ | Biology, physical or natural sciences or mathematics background | 3 rotations in first year. Salary, tuition waiver and health insurance covered all years. | 12/2 | Neil King | Rich Gardner and Nina Salama (MCB Co-Directors) | Brian Koepnick: koepnick@uw.edu | |||||||||||||||||||
19 | David Baker | http://www.bakerlab.org/ | University of Washington, Seattle | Protein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder design | Bioengineering | https://bioe.uw.edu/academic-programs/graduate/phd/ | Bioengineering, Chemical engineering, Chemistry, Physics, Biology, Computer science, Electrical engineering | 1-2 rotations during first year, PhD students fully funded through RA/TAship. | 12/1 | Kalei L. Combs kaleic@uw.edu | Brian Koepnick: koepnick@uw.edu | ||||||||||||||||||||
20 | David Baker | http://www.bakerlab.org/ | University of Washington, Seattle | Protein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder design | Genome Sciences | http://www.gs.washington.edu/index.htm | None needed, most come with experimental backgrounds (Biology, Biochemistry) or computational (Computer Science, etc), ideal candidate have both. | Students rotate through three labs their first year before selecting a thesis lab. Funding is provided by the department during this time. | 12/1 | Brian Giebel: bgiebel@uw.edu | Brian Koepnick: koepnick@uw.edu | ||||||||||||||||||||
21 | David Baker | http://www.bakerlab.org/ | University of Washington, Seattle | Protein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder design | Molecular Engineering | https://www.moles.washington.edu/phd/ | The MolE PhD program does not require students to have a degree in a particular discipline but does require the student hold a BS or BA degree from an engineering or natural sciences program. The MolE PhD program accepts students with diverse backgrounds in engineering, science, or medicine. | International and domestic students are funded for the first 3 academic quarters by the MolES Institute and thereafter by the student’s Principal Investigator (PI). | 12/15 | Paul Neubert, Counseling Services Coordinator, 206-221-6542, pneubert@uw.edu. | Brian Koepnick: koepnick@uw.edu | ||||||||||||||||||||
22 | David Baker | http://www.bakerlab.org/ | University of Washington, Seattle | Protein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder design | Computer Science | https://www.cs.washington.edu/academics/phd | Computer Science; Computer Engineeirng | 3 years of guaranteed funding (tuition, stipend, health insurance) through RA or TA positions. Assigned temporary advisor to help mentor new students. | 12/15 | Su-In Lee, Larry Ruzzo, Georg Seelig | Elise Dorough (Director of Graduate Student Services) elised@cs.washington.edu | Brian Koepnick: koepnick@uw.edu | |||||||||||||||||||
23 | Eric Fischer | fischerlab.org | Harvard Medical School/Dana-Farber Cancer Institute | Structural biology & computational structural biology/Chemical biology/Protein-protein-ligand docking/Protein design | Harvard Systems, Synthetic, and Quantitative Biology PhD Program | https://sysbiophd.harvard.edu/ | Interdisciplinary, quantitative | 2-4 rotations, stipend/fees paid by program/lab | elizabeth_pomerantz@hms.harvard.edu | ||||||||||||||||||||||
24 | Eric Fischer | fischerlab.org | Harvard Medical School/Dana-Farber Cancer Institute | Structural biology & computational structural biology/Chemical biology/Protein-protein-ligand docking/Protein design | Harvard Chemical Biology PhD Program | https://chembiophd.harvard.edu/ | Chemical biology | 2-4 rotations, stipend/fees paid by program/lab | jason_millberg@hms.harvard.edu | ||||||||||||||||||||||
25 | Eric Fischer | fischerlab.org | Harvard Medical School/Dana-Farber Cancer Institute | Structural biology & computational structural biology/Chemical biology/Protein-protein-ligand docking/Protein design | Harvard PhD Program in Biological and Biomedical Sciences | https://www.hms.harvard.edu/dms/bbs/ | Interdisciplinary biological sciences, umbrella program | 2-4 rotations, stipend/fees paid by program/lab | dymecki@genetics.med.harvard.edu | ||||||||||||||||||||||
26 | Eva-Maria Strauch | http://www.strauchlab.com/ | University of Georgia | Protein design, protein therapeutics and immunogens targeting viral surface proteins, directed evolution | Integrated life sciences, pharmaceutical & biomedical sciences | http://www.strauchlab.com/ | biological sciences, chemistry or biochemistry | ILS program: 3 rotation first semester, PBS program: direct admit with no rotations, student supported through RA or TA position | - | ||||||||||||||||||||||
27 | Eva-Maria Strauch | http://www.strauchlab.com/ | University of Georgia | Protein design, protein therapeutics and immunogens targeting viral surface proteins, directed evolution | bioinformatics | http://www.strauchlab.com/ | biological sciences, chemistry or biochemistry | enter through ILS program: 3 rotation first semester, direct admit some times possible, student supported through RA or TA position | - | ||||||||||||||||||||||
28 | Fabio Parmeggiani | http://www.bris.ac.uk/brissynbio/people/369828 | University of Bristol | Modular protein design, repeat proteins, protein origami | Synthetic Biology (under renewal) | http://www.synbio-cdt.ac.uk/ | 3/9 | ||||||||||||||||||||||||
29 | Firas Khatib | http://www.cis.umassd.edu/~fkhatib/ | UMass Dartmouth | Foldit, Citizen Science/Gamification, Computational Biology, Protein Structure Determination/Prediction | Computer and Information Science | https://www.umassd.edu/engineering/cis/graduate/ | https://www.umassd.edu/graduate/deadlinesandtestrequirements/ | ||||||||||||||||||||||||
30 | Frank DiMaio | https://dimaiolab.ipd.uw.edu/ | University of Washington, Seattle | Computational structural biology | Biochemistry | https://depts.washington.edu/biowww/pages/graduate-application.shtml | Background in biology, chemistry or biochemistry | 3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. | 12/2 | Neil King, David Baker | Erin Kirschner kirsche@uw.edu | Brian Koepnick: koepnick@uw.edu | |||||||||||||||||||
31 | Frank DiMaio | https://dimaiolab.ipd.uw.edu/ | University of Washington, Seattle | Computational structural biology | BPSD | http://depts.washington.edu/bpsd/ | Backgound in biology, physical sciences, or mathematics. | 3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. | 12/2 | Neil King, David Baker | Erin Kirschner kirsche@uw.edu | Brian Koepnick: koepnick@uw.edu | |||||||||||||||||||
32 | Gabriel Rocklin | http://www.rocklinlab.org | Northwestern University | Protein biophysics, protein design, protein therapeutics, mass spec proteomics | Driskill Graduate Program in Life Sciences | https://www.feinberg.northwestern.edu/sites/dgp/ | DGP preferred over IBiS | Dec 1 2018 | https://syntheticbiology.northwestern.edu | ||||||||||||||||||||||
33 | Gabriel Rocklin | http://www.rocklinlab.org | Northwestern University | Protein biophysics, protein design, protein therapeutics, mass spec proteomics | Interdisciplinary Biological Sciences Graduate Program | https://www.ibis.northwestern.edu | Dec 15 2018 | https://syntheticbiology.northwestern.edu | |||||||||||||||||||||||
34 | Gustav Oberdorfer | TBD | Graz University of Technology | Design of functional proteins: enzymes, small molecule binding proteins | Biochemistry and Molecular Biology | https://www.biochemistry.tugraz.at/ | Structural Biology, Biochemistry, Bioengineering | - | |||||||||||||||||||||||
35 | Ingemar André | http://andrelab.org | Lund University | Protein assembly design, protein evolution, ensemble modeling with experimental data | Biochemistry and Molecular Biophysics | http://www.cmps.lu.se | Biochemistry, biophysics, bioinformatics | ||||||||||||||||||||||||
36 | Jacob Corn | cornlab.org | ETH Zurich | Genome editing, DNA damage, protein engineering. Lab uses Rosetta but does not do development. | Biology | https://www.biol.ethz.ch/en/doctoral-studies.html | Interest in cell biology | Both program admit and direct admit are possible | 12/1, 7/1 | ||||||||||||||||||||||
37 | James Moody | https://www.chem.byu.edu/faculty/james-d-moody/ | Brigham Young University, Provo, Utah | Structural Biology and Enzymology, Protein-based materials, Protein crystallization techniques, Enzyme design | Chemistry and Biochemistry | https://www.chem.byu.edu/graduate-students/apply-now/ | Interdisciplinary | Rotations Fall semester paid by TA-ship, stipend/fees after rotations are paid either from PIs grant(s), student fellowship(s), or TA-ships. | 1/5/19 | chemgradsec@chem.byu.edu | Josh Tseng | ||||||||||||||||||||
38 | Jeffrey Gray | graylab.jhu.edu | Johns Hopkins | Protein docking, antibodies, glycoproteins, membrane proteins, biomineralization, deep learning | Program in Molecular Biophysics | pmb.jhu.edu | Interdisciplinary: biology, chemistry, biochemistry, engineering, math, CS | NIH training program, 3 rotations in first year, stipend/fees (all years) paid by program/ lab | 12/1 | Maggie Johnson, Albert Lau, Doug Barrick, Karen Fleming, TJ Ha (40 faculty) | Doug Barrick (Program Director) | Morgan Nance, Jeff Ruffolo | |||||||||||||||||||
39 | Jeffrey Gray | graylab.jhu.edu | Johns Hopkins | Protein docking, antibodies, glycoproteins, membrane proteins, biomineralization, deep learning | Chemical & Biomolecular Engineering | chembe.jhu.edu | Typically ChE or BioE | ChemBE department places students in labs in October of first year | 12/15 | Yannis Kevrekidis, Paulette Clancy, Marc Ostermeier, Jamie Spangler | David Gracias (Director of PhD Program) | Rebecca Alford (now @DESRes), Ameya Harmalkar | |||||||||||||||||||
40 | Jeffrey Gray | graylab.jhu.edu | Johns Hopkins | Protein docking, antibodies, glycoproteins, membrane proteins, biomineralization, deep learning | Biomedical Engineering | https://www.bme.jhu.edu/ | Alexis Battle, Rachel Karchin, Joel Bader, Netz Arroyo | Hong Lan (Program coordinator) | Mike Pacella (now @Schulman lab) | ||||||||||||||||||||||
41 | Jeffrey Gray | graylab.jhu.edu | Johns Hopkins | Protein docking, antibodies, glycoproteins, membrane proteins, biomineralization, deep learning | Master's in ChemBE | chembe.jhu.edu | Typically ChE or BioE, but also broad including chemistry, biochem, biology, CS | 6 classes + a research thesis = MS degree. Two year program. | 12/15 | Yannis Kevrekidis, Paulette Clancy, Marc Ostermeier, Jamie Spangler | Sakul Ratanalert (Director of MS Program) | Joseph Lubin (now @Rutgers), Xiyao Long (now @Drexel), Wenhao Gao (now @MIT) | |||||||||||||||||||
42 | Jens Meiler | www.meilerlab.org | Vanderbilt University | Computational Biology: biologics, small molecules, structure prediction | Chemistry | https://gradschool.vanderbilt.edu/ | Chemistry, Biochemistry | 3 rotations in first year, stipend/fees (all years) paid by program/ lab | 1/15 | ||||||||||||||||||||||
43 | Jens Meiler | www.meilerlab.org | Vanderbilt University | Computational Biology: biologics, small molecules, structure prediction | Quantitative Chemical Biology | https://gradschool.vanderbilt.edu/ | any quantitative major (CS, Math, Physics) | 3 rotations in first year, stipend/fees (all years) paid by program/ lab | 1/15 | ||||||||||||||||||||||
44 | Jens Meiler | www.meilerlab.org | Vanderbilt University | Computational Biology: biologics, small molecules, structure prediction | Biomedical Informatics | https://gradschool.vanderbilt.edu/ | computer science | 3 rotations in first year, stipend/fees (all years) paid by program/ lab | 1/15 | ||||||||||||||||||||||
45 | Jens Meiler | www.meilerlab.org | Vanderbilt University | Computational Biology: biologics, small molecules, structure prediction | Pharmacology | https://gradschool.vanderbilt.edu/ | Pharmacy, Chemistry | 3 rotations in first year, stipend/fees (all years) paid by program/ lab | 1/15 | ||||||||||||||||||||||
46 | Jens Meiler | www.meilerlab.org | Leipzig University | Computational Biology: biologics, small molecules, structure prediction | Chemistry, Biochemistry, Computer Science | https://www.uni-leipzig.de/en/ | Chemistry, Biochemistry, Computer Science, or related | Direct admission into the laboratory with BSc or MSc degree, stipend/fees (all years) paid by program/lab | jens@meilerlab.org | ||||||||||||||||||||||
47 | Jeremy Mills | https://biodesign.asu.edu/jeremy-mills | Arizona State University | Computational Protein design, non-canonical amino acids, fluorescent biosensors, structural biology | Chemisty and Biochemistry | https://sms.asu.edu/degrees/grad | interdisciplinary: Chemistry, biochemistry, molecular biology | 3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. | 1/1 | Giovanna Ghirlanda | David Nutt (david.nutt@asu.edu) | Bethany Kartchner (bkolbaba@asu.edu) | |||||||||||||||||||
48 | Joanna Slusky | http://slusky.compbio.ku.edu/ | University of Kansas | Membrane protein design | Computational Biology | http://compbio.ku.edu/ | experience coding and biology or chemistry | 3 rotations in first year, stipend/fees (all years) paid by program/ lab | 12/1 | Joanna Slusky (Director of Graduate Admissions for Computaitonal Biology) | |||||||||||||||||||||
49 | Joanna Slusky | https://sluskylab.ku.edu/ | University of Kansas | protein design and evolution: antibiotic resistance, enzyme design, environmental remediation | Center for Computaional Biology | http://compbio.ku.edu/phd-program-1 | our students come from many academically diverse backgrounds: comp sci, biochem, biophysics, chem and & physics | 12/4 | slusky@ku.edu | ||||||||||||||||||||||
50 | Joanna Slusky | http://slusky.compbio.ku.edu/ | University of Kansas | Membrane protein design | Molecular Biosciences | https://molecularbiosciences.ku.edu/ | any bioscience | 3 rotations in first year, stipend/fees (all years) paid by program/ lab | 12/1 | ||||||||||||||||||||||
51 | John Karanicolas | https://www.karanicolaslab.org | U Penn | Computational chemical biology (cancer drug discovery, Rosetta-based virtual screening and medicinal chemistry) | Biochemistry and Molecular Biophysics | http://www.med.upenn.edu/bmbgrad/ | Biochemistry / chemistry / biophysics | 12/1 | John Karanicolas (Director of Postdoctoral and Graduate Student Training Program at Fox Chase) | Simon Kelow | |||||||||||||||||||||
52 | John Karanicolas | https://www.karanicolaslab.org | Temple U | Computational chemical biology (cancer drug discovery, Rosetta-based virtual screening and medicinal chemistry) | Molecular and Cellular Biosciences | https://medicine.temple.edu/education/biomedical-sciences-graduate-program/areas-concentration/molecular-and-cellular | Biochemistry / chemistry / biophysics | 2/15 | John Karanicolas (Director of Postdoctoral and Graduate Student Training Program at Fox Chase) | Chris Parry | |||||||||||||||||||||
53 | Justin Siegel | https://sites.google.com/site/ucdsiegellab/home | UC Davis | Computationally Guided Enzyme Design & Discovery | Chemistry | https://chemistry.ucdavis.edu/graduate/prospective-students/phd-chemistry | Chemistry, Biochemistry | 1 quarter rotations, stipend/fees (all years) paid by TA/lab | 12/1 | Dean Tantillo | |||||||||||||||||||||
54 | Justin Siegel | Biochemistry, Molecular, Cellular and Developmental Biology | http://bmcdb.ucdavis.edu/ | Biochemistry | 3 rotations in first year, stipend/fees (all years) paid by program/ lab | 12/1 | |||||||||||||||||||||||||
55 | Justin Siegel | Integrative Genetics and Genomics | http://igg.ucdavis.edu/index.html | Biochemistry, Chemistry | 3 rotations in first year, stipend/fees (all years) paid by program/ lab | 12/1 | |||||||||||||||||||||||||
56 | Justin Siegel | Biomedical Engineering | https://bmegg.ucdavis.edu/ | Engineering | 3 rotations in first year, stipend/fees (all years) paid by program/ lab | 12/1 | |||||||||||||||||||||||||
57 | Lin Jiang | Biochemistry, Biophysics, and Structural Biology | https://www.mbi.ucla.edu/bbsb/ | Biochemistry | 3 rotations in first year, stipend/fees (all years) paid by program/ lab | 12/1 | |||||||||||||||||||||||||
58 | Matthew O'Meara | https://medicine.umich.edu/dept/dcmb/matthew-omeara-phd | University of Michigan | Computational Pharmacology | Program in Biomedical Sciences | https://ogps.med.umich.edu/pibs/ | Computational Biology | 3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. | 12/1 | Yang Zhang, Charles L. Brooks III, | pibs@umich.edu | ||||||||||||||||||||
59 | Michael Shirts | https://www.colorado.edu/lab/shirtsgroup/ | University of Colorado Boulder | soft materials, thermodynamics, nonnatural oligamers | Chemical and Biological Engineering | https://www.colorado.edu/chbe/academics/graduate-program | Chemical engineering | 12/15 | Tim Whitehead | chbegrad@colorado.edu | Lenny Fobe | ||||||||||||||||||||
60 | Michael Shirts | https://www.colorado.edu/lab/shirtsgroup/ | University of Colorado Boulder | soft materials, thermodynamics, nonnatural oligamers | IQ Biology | https://www.colorado.edu/certificate/iqbiology/ | interdisciplinary quantitative biology | 12/1 or 12/15 | Tim Whitehead | Amber.McDonnell@colorado.edu | |||||||||||||||||||||
61 | Neil King | http://kinglab.ipd.uw.edu/ | University of Washington, Seattle | Designing protein-based nanomaterials for medical applications | Biochemistry | https://depts.washington.edu/biowww/pages/graduate-application.shtml | Background in biology, chemistry or biochemistry | 3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. | 12/2 | David Baker Frank DiMaio | Erin Kirschner kirsche@uw.edu | Brian Koepnick: koepnick@uw.edu | |||||||||||||||||||
62 | Neil King | http://kinglab.ipd.uw.edu/ | University of Washington, Seattle | Designing protein-based nanomaterials for medical applications | BPSD | http://depts.washington.edu/bpsd/ | Backgound in biology, physical sciences, or mathematics. | 3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. | 12/2 | David Baker, Frank DiMaio | Erin Kirschner kirsche@uw.edu | Brian Koepnick: koepnick@uw.edu | |||||||||||||||||||
63 | Neil King | http://kinglab.ipd.uw.edu/ | University of Washington, Seattle | Designing protein-based nanomaterials for medical applications | MCB | http://mcb-seattle.edu/ | Biology, physical or natural sciences or mathematics background | 3 rotations in first year. Salary, tuition waiver and health insurance covered all years. | 12/2 | David Baker | Rich Gardner and Nina Salama (MCB Co-Directors) | Brian Koepnick: koepnick@uw.edu | |||||||||||||||||||
64 | Nik Sgourakis | http://niksgourakis.chemistry.ucsc.edu | UC Santa Cruz | protein dynamics, molecular chaperones, MHC-I antigen processing and presentation, T cell receptor interactions, NMR, Hybrid modeling | Chemical Biology, Biochemistry and Biophysics | https://pbse.ucsc.edu/cb3/index.html | 12/1 | ||||||||||||||||||||||||
65 | Ora Furman | http://www.cs.huji.ac.il/~fora | Hebrew University of Jerusalem | Bioinformatics, protein interactions, structure prediction methods, peptide-protein interactions, peptide-based drugs | Bioinformatics and Genomics | http://new.huji.ac.il/en | Interdisciplinary | 12/1 | |||||||||||||||||||||||
66 | Possu Huang/Rhiju Das | proteindesign.org | stanford university | protein design, RNA modeling, ETERNA | Bioengineering | https://bioengineering.stanford.edu/academics/graduate-programs | engineering quantitative skills | 3~4 rotations, 2 year stipend paid for by program, favorable for international students | 12/4 | ||||||||||||||||||||||
67 | Possu Huang/Rhiju Das | stanford university | protein design, RNA modeling, ETERNA | Stanford Biosciences (this umbrella program includes biochemistry, biophysics, structural biology, etc. | https://biosciences.stanford.edu/prospective-students/how-to-apply/ | Broad umbrella program | 3~4 rotations, 4 year stipend paid for by program | 12/4 | |||||||||||||||||||||||
68 | Richard Bonneau | https://scholar.google.com/citations?user=Wq8XTykAAAAJ&hl=en&oi=ao | NYU | protein structure-function (rosetta meets ML), peptidiomimetics, protein structure prediction | Center for Data Science | https://cds.nyu.edu | CS or stats or math | 12/12 | |||||||||||||||||||||||
69 | Richard Bonneau | https://twitter.com/RichBonneauNYU?ref_src=twsrc%5Egoogle%7Ctwcamp%5Eserp%7Ctwgr%5Eauthor | NYU | Biology Department | https://as.nyu.edu/biology.html | CS or stats and biophysics or biology | 12/1 | ||||||||||||||||||||||||
70 | Roland Dunbrack | http://dunbrack.fccc.edu https://www.foxchase.org/roland-dunbrack-jr | Fox Chase Cancer Center - Adjunct Professor at Drexel College of Medicine | Bioinformatics, antibody design, structure prediction methods | Drexel - MCBG Program | https://drexel.edu/medicine/academics/graduate-school/molecular-cell-biology-genetics/ | Biology | 3 rotations first year, stipend (all years) paid by program first two years / lab after that | 12/15 | ||||||||||||||||||||||
71 | Roland Dunbrack | http://dunbrack.fccc.edu https://www.foxchase.org/roland-dunbrack-jr | Fox Chase Cancer Center - Adjunct Professor at University of Penn | Bioinformatics, antibody design, structure prediction methods | Penn - Biochemistry and Molecular Biophysics | http://www.med.upenn.edu/bmbgrad/ | Interdisciplinary (Physics, Math, Biology, Engineering, Chemistry, Computer Science) | 3 Rotations first year, 4 if summer. Stipend paid for 2 years by program, lab funding / fellowship funding after that | 12/1 | Simon Kelow (simon.kelow@gmail.com) | |||||||||||||||||||||
72 | Sagar Khare | http://sagardkharelab.org | Rutgers University | Enzyme Design and Engineering | Chemistry and Chemical Biology | https://chem.rutgers.edu/academics/graduate-program | Chemistry, Biochemistry | 2/3 rotations in the first year, first year fellowship, stipend (all years) paid by TA/lab | 12/15 | David Case, Darrin York, Jean Baum, Enver Izgu, Andy Niuewkoop, Lu Wang | Greg Herzog (Program Director) | Joseph Lubin | |||||||||||||||||||
73 | Sagar Khare | http://sagardkharelab.org | Rutgers University | Enzyme Design and Engineering | Quantitative Biomedicine | https://iqb.rutgers.edu/qbprogram | Interdisciplinary (broad umbrella program) | 2/3 rotations in first year, first year fellowship/TA paid by program, stipend all years paid by lab/TA | Wei Dai, Arek Kulczyk, Vik Nanda, Yana Bromberg | Sagar Khare (Program Director) | William Hansen | ||||||||||||||||||||
74 | Sarel Fleishman | www.fleishmanlab.org | Weizmann Institute of Science, Israel | Design of protein function: enzymes, antibodies & membrane proteins | Life Sciences, Chemistry or Bioinformatics | www.weizmann.ac.il/feinberg | Biochemistry preferred | Rolling | Dan Tawfik, Nir London | ||||||||||||||||||||||
75 | Scott Horowitz | https://www.horowitzlab.com/ | University of Denver | Chaperones and protein folding, Foldit | Chemistry | https://www.du.edu/nsm/departments/chemistryandbiochemistry/degreeprograms/graduate/phddegree.html | Chemistry | 1-3 rotations in first year, stipend/fees (all years) paid by program/ lab, teaching required in first year | Todd Blankenship at Todd.Blankenship@du.edu | ||||||||||||||||||||||
76 | Scott Horowitz | https://www.horowitzlab.com/ | University of Denver | Chaperones and protein folding, Foldit | Biophysics | https://www.du.edu/nsm/departments/biophysics/index.html | Chemistry, biochemistry, biophysics, biology, or physics background | 2-3 rotations in first year, stipend/fees (all years) paid by program/ lab, teaching required in first year | 1/31 | Mary Shonk at cheminfo@du.edu | |||||||||||||||||||||
77 | Parisa Hosseinzadeh | https://www.parisahlab.org | University of Oregon | Design of functional peptides and proteins, structural understanding of peptides | Biochemistry/ IMB | https://chemistry.uoregon.edu/ , http://molbio.uoregon.edu/apply/ | Chemistry and Biochemsitry (Can be Biology or Physics if applying to IMB through them) | 3 rotations the first year, stipend/fees (all years) paid by program/ lab | 1/5 | Mike Harms, Calin Plesa | |||||||||||||||||||||
78 | Parisa Hosseinzadeh | https://www.parisahlab.org | University of Oregon | Design of functional peptides and proteins, structural understanding of peptides | Knight Campus center | https://accelerate.uoregon.edu/ | Bioengineering (Biomedical engineering, mechanical/electrical engineering, chemical engineering, etc) | No rotations, will join a lab. Currently application joing through OSU BioE department (joint program) | Calin Plesa, Marian Hettiaratchi | ||||||||||||||||||||||
79 | Seth Cooper | http://sethcooper.net/ | Northeastern University | citizen science, Foldit | Computer Science | http://khoury.northeastern.edu/ | Computer Science | ||||||||||||||||||||||||
80 | Sinisa Bjelic | http://protein.technology | Linnaeus University | allosteric covalent modifications, protein-protein interfaces | Chemistry | lnu.se | Biochemistry and Chemical Biology | ||||||||||||||||||||||||
81 | Steffen Lindert | https://research.cbc.osu.edu/lindert.1/ | Ohio State University | protein structure prediction from MS and cryoEM data | Chemistry | https://chemistry.osu.edu/graduate | Chemistry, Biochemistry | 2-3 rotations in first semester, stipend/fees (all years) paid by TA/lab | 12/15 | ||||||||||||||||||||||
82 | Steffen Lindert | OSBP | https://osbp.osu.edu/ | Biochemistry, biophysics | 3 rotations in first year, stipend/fees (all years) paid by program/ lab | 12/1 | |||||||||||||||||||||||||
83 | Steffen Lindert | OSU Biophysics | https://biophysics.osu.edu/ | Biochemistry, biophysics | 3 rotations in first year, stipend/fees (all years) paid by program/ lab | 12/10 | |||||||||||||||||||||||||
84 | Summer Thyme | https://www.thymelab.org/ | The University of Alabama at Birmingham | Neurobiology; using Rosetta to build tools; testing Rosetta designs in zebrafish models; drug discovery | Umbrella GBS program | https://www.uab.edu/gbs/home/ | Interdisciplinary (broad umbrella program) | 3 rotations in first year, stipend/fees (all years) paid by program/ lab | 12/1 | Yuhua Song (docking, non-Rosetta) | grad-gbs@uab.edu | Ari Ginsparg | |||||||||||||||||||
85 | Tanja Kortemme | kortemmelab.ucsf.edu | University of California San Francisco | Protein design, flexibility and ensembles, sampling, biosensors, interfaces, synthetic and quantitative biology | Biophysics (iPQB) | https://biophysics.ucsf.edu | Interdisciplinary (Physics, Math, Biology, Engineering, Chemistry, Computer Science) | NIH training program, 3 rotations in first year, stipend, tuition/fees & health insurance (all years) paid by program/ lab | 12/1 | Bill deGrado, James Fraser, Michael Grabe, Matt Jacobson, Hana el Samad, Aashish Manglik, Andrej Sali, Brian Shoichet, Jim Wells, David Agard, Yifan Cheng | Tanja (Program Director) | Amanda Loshbaugh, Samuel Thompson | |||||||||||||||||||
86 | Tanja Kortemme | kortemmelab.ucsf.edu | UCSF/UC Berkeley | Protein design, flexibility and ensembles, sampling, biosensors, interfaces, synthetic and quantitative biology | Bioengineering (joint with UC Berkeley) | http://bioegrad.berkeley.edu | Interdisciplinary, focus on engineering | NIH training program, 3 rotations in first year, stipend, tuition/fees & health insurance (all years) paid by program/ lab | 12/15 | Adam Abate, John Dueber, Hana el Samad, Jay Keasling, Jim Wells | Todd McDevitt (Program Director) | Chris Mathy, Cody Krivacic, Xingjie Pan | |||||||||||||||||||
87 | Tim Whitehead | https://www.colorado.edu/faculty/whitehead/ | University of Colorado Boulder | Data-driven protein engineering and design, antibodies, molecular recognition, plant synthetic biology | Biological Engineering | https://www.colorado.edu/chbe/prospective-students/prospective-graduate-students | Biochemistry, focus on engineering | no rotations for Chemical and Biological Eng; rotation TBD for Biological Engineering PhD; 1st semester TA, stipends/fees (all years) paid by lab | 12/15 | Kristi Anseth, Chris Bowman, Stephanie Bryant, Jerome Fox, Joel Kaar, Michael Shirts | Dom de Vangel (Program Director; chbegrad@colorado.edu) | Monica Kirby, Alison Leonard, Zach Baumer, PJ Steiner, Brian Petersen | |||||||||||||||||||
88 | Tobias Madl | https://forschung.medunigraz.at/fodok/suchen.person_uebersicht?sprache_in=en&ansicht_in=&menue_id_in=101&id_in=80568 | Medical University of Graz, Austria | Structural biology & computational structural biology | Molecular Medicine | https://www.medunigraz.at/phd/phd-programs/molmed/ | Biochemistry, molecular biology, biophysics, chemistry | September 15th | tobias.madl@medunigraz.at | ||||||||||||||||||||||
89 | Tobias Madl | https://forschung.medunigraz.at/fodok/suchen.person_uebersicht?sprache_in=en&ansicht_in=&menue_id_in=101&id_in=80568 | Medical University of Graz, Austria | Structural biology & computational structural biology | Metabolic and Cardiovascular Disease | https://www.medunigraz.at/DK_MCD/ | Biochemistry, molecular biology, biophysics, chemistry | September 15th | tobias.madl@medunigraz.at | ||||||||||||||||||||||
90 | Vatsan Raman | www.ramanlab.org | Univ. of Wisconsin-Madison | Design of small molecule biosensors, microbial regulation and bacteriophages | Integrated Program in Biochemistry | https://ipib.wisc.edu/ | Biochemistry, biophysics | NIH training grants available. Three rotations each 5 weeks long | 12/1 | Phil Romero | Ivan Rayment (program director) | Tony Meger | |||||||||||||||||||
91 | Vladimir Yarov-Yarovoy | https://basicscience.ucdmc.ucdavis.edu/Sack_and_Yarov-Yarovoy_Labs/ | UC Davis | Membrane proteins, ion channels, protein design, biosensor design | Biophysics | http://bph.ucdavis.edu/ | Biological or physical science or certain engineering disciplines | NIH training programs available, 4 rotations in fall and winter quarters paid by program, stipend/fees after rotations are paid either from PIs grant(s), student fellowship(s), or TAs. | 1/2 | Justin Siegel, Colleen Clancy, Igor Vorobyov | Atul Parikh (Program Director; anparikh@ucdavis.edu) | Phuong Tran Nguyen, Jan Maly, Aiyana Emigh, Brandon Harris | |||||||||||||||||||
92 | Vladimir Yarov-Yarovoy | Biochemistry, Molecular, Cellular and Developmental Biology | http://bmcdb.ucdavis.edu/ | Biochemistry | 3 rotations in first year, stipend/fees (all years) paid by program/ lab | 12/1 | Justin Siegel | Bruce Draper (Program Director; bwdraper@ucdavis.edu) | |||||||||||||||||||||||
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