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Faculty (PI)PI WebsiteInstitutionResearch areasProgram (PhD unless noted)WebsiteNeeded backgroundProgram Notes2020 DeadlineOther Program Faculty of InterestProgram contactRosettaCommons Student Contact
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Alena Khmelinskaia
https://www.limes-institut-bonn.de/en/research/research-departments/unit-4/khmelinskaia-lab/khmelinskaia-lab-home/
University of Bonn, GermanyDe novo design of self-assembling protein materials, strucutral flexibility, membrane biophysics, surface coating and cargo encapsulationLife and Medical Sciences InstituteBiochemistry, molecular biology, biophysics, computational biology or equivalent; interdesciplinary, focus on computational and/or quantitative biologyno rotations, straight to businessanytimeakhmelin@uni-bonn.de
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Amelie Stein
https://scholar.google.com/citations?user=eH6qiFsAAAAJ&hl=en
University of Copenhagen, DenmarkStructural computational biology, protein stability & degradationBiologyBiochemistry, molecular biology, biophysics, nanoscience - typically MSc level required, or BSc + research experience Direct admit, no rotations; PhD program is 3 yearsamelie.stein@bio.ku.dk
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Anastassia Vorobievahttps://vib.be/labs/vorobieva-labVrije Universiteit Brussel/ Flanders Institute of BiotechnologyMembrane protein design, sensors, small-molecule bindingBioengineeringhttps://www.vub.be/en/phd#phdBiochemistry, molecular biology, biophysics, computational biology
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Bill Schiefhttps://www.scripps.edu/faculty/schief/Scripps ResearchVaccine design, protein design, directed evolution, antibodies, HIV, influenza, malaria, ebola, cancerScrippsInterdisciplinary2-3 rotations in first year
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Birte Höckerwww.proteindesign.uni-bayreuth.de/en/Universitat Bayreuth, GermanyEvolution & design of protein folds, ligand binding, enzyme engineeringBayNAT (Molecular Biosciences)www.baynat.uni-bayreuth.de/en/biochemistry preferredanytime
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Brian Kuhlmanhttp://klab.web.unc.edu/UNC Chapel HillProtein design, vaccine design for dengue virus, light-activatable proteins, protein therapeutics/antibodiesBBSP (Biological & Biomedical Sciences Program): Includes Molecular Biophysics and Computational Biology Programshttps://bbsp.unc.edu/Interdisciplinary: PhDs offered in Biochemistry, Biophysics, Computational Biology and other areas of the biological sciences.3 rotations in first year (with option for summer rotation), stipend/fees (all years) paid by program/ lab12/4
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Brian Piercepiercelab.ibbr.umd.eduUniversity of MarylandProtein docking, protein design, vaccine design, immune recognitionBiological Sciencesbisi.umd.eduInterdisciplinary, biology3 rotations in first year12/1Charles Delwiche (Program Director)Johnathan Guest
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Brian Piercepiercelab.ibbr.umd.eduUniversity of MarylandProtein docking, protein design, vaccine design, immune recognitionProgram in Virologyhttp://simona065.wixsite.com/umd-virology-programVirologyNIH training program, available to UMD Biological Science students and others12/1Anne Simon (Program Director)Johnathan Guest
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Bruno Correiahttps://lpdi.epfl.ch/Ecole Polytechnique Federale de LausanneProtein design, synthetic biology, vaccine design, de novo design Computational Biology
https://www.epfl.ch/education/phd/programs/edcb-computational-and-quantitative-biology/
Interdisciplinary, focus on computational and quantitative biologyno rotations - straight to business
https://www.epfl.ch/education/phd/programs/edcb-computational-and-quantitative-biology/edcb-how-to-apply/
Matteo Dal Peraro (Program Director)Freyr Sverrisson
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Bruno Correiahttps://lpdi.epfl.ch/Ecole Polytechnique Federale de LausanneProtein design, synthetic biology, vaccine design, de novo design Bioengineering and Biotechnology https://phd.epfl.ch/EDBBInterdisciplinary, focus on engineeringno rotations - straight to business
https://phd.epfl.ch/cms/site/phd/lang/en/deadlines
Georg Fantner(Program Director)Fabian Sesterhenn
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Byung-Ha Ohhttps://sites.google.com/view/tpdsb/homeKorea Advanced Institute of Science and TechnologyTherapeutic protein design, Structural biologyBiological Scienceshttps://bio.kaist.ac.kr/Biology3 rotations in first semester, stipend/fees (all years) paid by TA/labiskang@kaist.ac.krBo-Seong Jeong, Seonghoon Kim
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Colin Smithsmithlab.wesleyan.eduWesleyan UniversityProtein dynamics, protein design, allostery, NMRMolecular Biology & Biochemistryhttp://www.wesleyan.edu/mbb/grad_studies/Biochemistry, Biology2 rotations in first year, stipend/fees (all years) paid by TA/lab1/1Ishita Mukerji, Don Oliver, Rich Olson, Candice EtsonAmy MacQueen (Program Director)Meagan MacDonald
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Colin Smithsmithlab.wesleyan.eduWesleyan UniversityProtein dynamics, protein design, allostery, NMRChemistryhttp://www.wesleyan.edu/chem/graduates/Chemistry, Biochemistry3 rotations in first semester, stipend/fees (all years) paid by TA/lab1/1Erika Taylor, Alison O'Neil, Carlos Jimenez HoyosMichelle Personick (Program Director)Josh Dudley, Kat Blejec
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Dan Kulphttps://wistar.org/our-scientists/daniel-kulpU PennComputational and experimental vaccine/antibody/immune modulator designBioengineeringhttp://www.be.seas.upenn.edu/Biochemistry, Biophysics, Comp. Sci. 12/15Ravi Radhakrishnan, Scott L. Diamond, Andrew Tsourkas
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Dan Kulphttps://wistar.org/our-scientists/daniel-kulpU PennComputational and experimental vaccine/antibody/immune modulator designMicrobiology, Virology, and Parasitologyhttps://www.med.upenn.edu/camb/mvp.shtmlImmunology, Virology12/15James Wilson, John Wherry, Carl June
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Dan Kulphttps://wistar.org/our-scientists/daniel-kulpWistar InstituteComputational and experimental vaccine/antibody/immune modulator designVaccine & Immunotherapy Centerhttps://wistar.org/research-discoveries/vaccine-immunotherapy-centerStructural biology, immunology, bioengineering-David Weiner, Luis J. Montaner
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David Bakerhttp://www.bakerlab.org/University of Washington, SeattleProtein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder designBPSDhttp://depts.washington.edu/bpsd/Backgound in biology, physical sciences, or mathematics.3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. 12/2Neil King, Frank DiMaioErin Kirschner kirsche@uw.eduBrian Koepnick: koepnick@uw.edu
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David Bakerhttp://www.bakerlab.org/University of Washington, SeattleProtein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder designBiochemistry
https://depts.washington.edu/biowww/pages/graduate-application.shtml
Background in biology, chemistry or biochemistry3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. 12/2Neil King, Frank DiMaioErin Kirschner kirsche@uw.eduBrian Koepnick: koepnick@uw.edu
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David Bakerhttp://www.bakerlab.org/University of Washington, SeattleProtein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder designBioengineeringhttps://bioe.uw.edu/academic-programs/graduate/phd/Bioengineering, Chemical engineering, Chemistry, Physics, Biology, Computer science, Electrical engineering 1-2 rotations during first year, PhD students fully funded through RA/TAship.12/1Kalei L. Combs kaleic@uw.eduBrian Koepnick: koepnick@uw.edu
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David Bakerhttp://www.bakerlab.org/University of Washington, SeattleProtein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder designMCBhttp://mcb-seattle.edu/Biology, physical or natural sciences or mathematics background3 rotations in first year. Salary, tuition waiver and health insurance covered all years. 12/2Neil King
Rich Gardner and Nina Salama (MCB Co-Directors)
Brian Koepnick: koepnick@uw.edu
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David Bakerhttp://www.bakerlab.org/University of Washington, SeattleProtein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder designComputer Sciencehttps://www.cs.washington.edu/academics/phdComputer Science; Computer Engineeirng3 years of guaranteed funding (tuition, stipend, health insurance) through RA or TA positions. Assigned temporary advisor to help mentor new students.12/15 Su-In Lee, Larry Ruzzo, Georg Seelig Elise Dorough (Director of Graduate Student Services) elised@cs.washington.eduBrian Koepnick: koepnick@uw.edu
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David Bakerhttp://www.bakerlab.org/University of Washington, SeattleProtein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder designGenome Scienceshttp://www.gs.washington.edu/index.htmNone needed, most come with experimental backgrounds (Biology, Biochemistry) or computational (Computer Science, etc), ideal candidate have both. Students rotate through three labs their first year before selecting a thesis lab. Funding is provided by the department during this time.12/1Brian Giebel: bgiebel@uw.eduBrian Koepnick: koepnick@uw.edu
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David Bakerhttp://www.bakerlab.org/University of Washington, SeattleProtein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder designMolecular Engineeringhttps://www.moles.washington.edu/phd/The MolE PhD program does not require students to have a degree in a particular discipline but does require the student hold a BS or BA degree from an engineering or natural sciences program. The MolE PhD program accepts students with diverse backgrounds in engineering, science, or medicine.International and domestic students are funded for the first 3 academic quarters by the MolES Institute and thereafter by the student’s Principal Investigator (PI).12/15Paul Neubert, Counseling Services Coordinator, 206-221-6542, pneubert@uw.edu.Brian Koepnick: koepnick@uw.edu
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Eric Fischerfischerlab.orgHarvard Medical School/Dana-Farber Cancer InstituteStructural biology & computational structural biology/Chemical biology/Protein-protein-ligand docking/Protein designHarvard Chemical Biology PhD Programhttps://chembiophd.harvard.edu/Chemical biology2-4 rotations, stipend/fees paid by program/labjason_millberg@hms.harvard.edu
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Eric Fischerfischerlab.orgHarvard Medical School/Dana-Farber Cancer InstituteStructural biology & computational structural biology/Chemical biology/Protein-protein-ligand docking/Protein designHarvard PhD Program in Biological and Biomedical Scienceshttps://www.hms.harvard.edu/dms/bbs/Interdisciplinary biological sciences, umbrella program2-4 rotations, stipend/fees paid by program/lab
dymecki@genetics.med.harvard.edu
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Eric Fischerfischerlab.orgHarvard Medical School/Dana-Farber Cancer InstituteStructural biology & computational structural biology/Chemical biology/Protein-protein-ligand docking/Protein designHarvard Systems, Synthetic, and Quantitative Biology PhD Programhttps://sysbiophd.harvard.edu/Interdisciplinary, quantitative2-4 rotations, stipend/fees paid by program/labelizabeth_pomerantz@hms.harvard.edu
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Eva-Maria Strauchhttp://www.strauchlab.com/ University of GeorgiaProtein design, protein therapeutics and immunogens targeting viral surface proteins, directed evolutionIntegrated life sciences, pharmaceutical & biomedical scienceshttp://www.strauchlab.com/biological sciences, chemistry or biochemistryILS program: 3 rotation first semester, PBS program: direct admit with no rotations, student supported through RA or TA position-
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Eva-Maria Strauchhttp://www.strauchlab.com/ University of GeorgiaProtein design, protein therapeutics and immunogens targeting viral surface proteins, directed evolutionbioinformatics http://www.strauchlab.com/biological sciences, chemistry or biochemistryenter through ILS program: 3 rotation first semester, direct admit some times possible, student supported through RA or TA position-
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Fabio Parmeggianihttp://www.bris.ac.uk/brissynbio/people/369828University of BristolModular protein design, repeat proteins, protein origamiSynthetic Biology (under renewal)http://www.synbio-cdt.ac.uk/3/9
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Firas Khatibhttp://www.cis.umassd.edu/~fkhatib/UMass DartmouthFoldit, Citizen Science/Gamification, Computational Biology, Protein Structure Determination/PredictionComputer and Information Sciencehttps://www.umassd.edu/engineering/cis/graduate/
https://www.umassd.edu/graduate/deadlinesandtestrequirements/
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Frank DiMaiohttps://dimaiolab.ipd.uw.edu/University of Washington, SeattleComputational structural biologyBPSDhttp://depts.washington.edu/bpsd/Backgound in biology, physical sciences, or mathematics.3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. 12/2Neil King, David BakerErin Kirschner kirsche@uw.eduBrian Koepnick: koepnick@uw.edu
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Frank DiMaiohttps://dimaiolab.ipd.uw.edu/University of Washington, SeattleComputational structural biologyBiochemistry
https://depts.washington.edu/biowww/pages/graduate-application.shtml
Background in biology, chemistry or biochemistry3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. 12/2Neil King, David BakerErin Kirschner kirsche@uw.eduBrian Koepnick: koepnick@uw.edu
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Gabriel Rocklinhttp://www.rocklinlab.orgNorthwestern UniversityProtein biophysics, protein design, protein therapeutics, mass spec proteomicsDriskill Graduate Program in Life Scienceshttps://www.feinberg.northwestern.edu/sites/dgp/Very broad- any background touching biomedical science3 rotations in first year, then selection of thesis advisor. Salary, tution, health insurance covered all years. Program is focused at Northwestern's medical campus but students can rotate on either campus.Dec 1 2018https://syntheticbiology.northwestern.eduTae-Eun Kim: tekim@u.northwestern.edu
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Gaurav Bhardwajhttps://peptidedesign.org/University of Washington, SeattleComputational peptide design for targeted therapeutics, Blood-brain barrier transportMedicinal Chemistryhttps://sop.washington.edu/department-of-medicinal-chemistry/
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Gaurav Bhardwajhttps://peptidedesign.org/University of Washington, SeattleComputatiional peptide design for targeted therapeutics, Blood-brain barrier transportBiological Physics, Structure and Designhttps://depts.washington.edu/bpsd/
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Gaurav Bhardwajhttps://peptidedesign.org/University of Washington, SeattleComputatiional peptide design for targeted therapeutics, Blood-brain barrier transportMolecular Engineering and Scienceshttps://www.moles.washington.edu/
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Gaurav Bhardwajhttps://peptidedesign.org/University of Washington, SeattleComputatiional peptide design for targeted therapeutics, Blood-brain barrier transportMolecular and Cellular Biology Graduate Programhttps://mcb-seattle.edu/
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Gustav Oberdorferhttps://www.tugraz.at/institute/ibc/research/protein-design/Graz University of TechnologyDesign of functional proteins: enzymes, small molecule binding proteinsBiochemistry and Molecular Biologyhttps://www.biochemistry.tugraz.at/Structural Biology, Biochemistry, Bioengineering-
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Ingemar Andréhttp://andrelab.orgLund UniversityProtein assembly design, protein evolution, ensemble modeling with experimental dataBiochemistry and Molecular Biophysicshttp://www.cmps.lu.seBiochemistry, biophysics, bioinformatics
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Jacob Corncornlab.orgETH ZurichGenome editing, DNA damage, protein engineering. Lab uses Rosetta but does not do development.Biologyhttps://www.biol.ethz.ch/en/doctoral-studies.htmlInterest in cell biologyBoth program admit and direct admit are possible12/1, 7/1
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James Moodyhttps://www.chem.byu.edu/faculty/james-d-moody/Brigham Young University, Provo, UtahStructural Biology and Enzymology, Protein-based materials, Protein crystallization techniques, Enzyme designChemistry and Biochemistryhttps://www.chem.byu.edu/graduate-students/apply-now/Interdisciplinary
Rotations Fall semester paid by TA-ship, stipend/fees after rotations are paid either from PIs grant(s), student fellowship(s), or TA-ships.
1/5Dennis Della Corte (MD, ML, Dept of Physics)
chemgradsec@chem.byu.edu
Josh Tseng: yijietseng@gmail.com
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Jeffrey Graygraylab.jhu.eduJohns Hopkins UniversityProtein docking, antibody engineering, glycoproteins, membrane proteins, deep learningProgram in Molecular Biophysicspmb.jhu.eduInterdisciplinary: biology, chemistry, biochemistry, engineering, math, CSNIH training program, 3 rotations in first year, stipend/fees (all years) paid by program/ lab12/1Maggie Johnson, Albert Lau, Doug Barrick, Karen Fleming, TJ Ha, Brian Camley (40 faculty)Doug Barrick (Program Director)Morgan Nance, Jeff Ruffolo, Sam Canner
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Jeffrey Graygraylab.jhu.eduJohns Hopkins UniversityProtein docking, antibody engineering, glycoproteins, membrane proteins, deep learningChemical & Biomolecular Engineeringchembe.jhu.eduTypically ChE or BioEChemBE department places students in labs in October of first year12/15Yannis Kevrekidis, Paulette Clancy, Marc Ostermeier, Jamie SpanglerStavroula Sofou (Director of PhD Program)Rebecca Alford (now @DESRes), Ameya Harmalkar, Lee-Shin Chu
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Jeffrey Graygraylab.jhu.eduJohns Hopkins UniversityProtein docking, antibody engineering, glycoproteins, membrane proteins, deep learningMaster's in ChemBEchembe.jhu.eduTypically ChE or BioE, but also broad including chemistry, biochem, biology, CS6 classes + a research thesis = MS degree. Two year program.12/15Yannis Kevrekidis, Paulette Clancy, Marc Ostermeier, Jamie SpanglerSakul Ratanalert (Director of MS Program)Joseph Lubin (now @Rutgers), Xiyao Long (now @Drexel), Wenhao Gao (now @MIT)
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Jeffrey Graygraylab.jhu.eduJohns Hopkins UniversityProtein docking, antibody engineering, glycoproteins, membrane proteins, deep learningBiomedical Engineeringhttps://www.bme.jhu.edu/Alexis Battle, Rachel Karchin, Joel Bader, Netz ArroyoHong Lan (Program coordinator)Mike Pacella (now @Schulman lab)
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Jens Meilerwww.meilerlab.orgVanderbilt UniversityComputational Biology: biologics, small molecules, structure predictionQuantitative Chemical Biologyhttps://gradschool.vanderbilt.edu/any quantitative major (CS, Math, Physics)3 rotations in first year, stipend/fees (all years) paid by program/ lab1/15
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Jens Meilerwww.meilerlab.orgVanderbilt UniversityComputational Biology: biologics, small molecules, structure predictionChemistryhttps://gradschool.vanderbilt.edu/Chemistry, Biochemistry3 rotations in first year, stipend/fees (all years) paid by program/ lab1/15
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Jens Meilerwww.meilerlab.orgLeipzig UniversityComputational Biology: biologics, small molecules, structure predictionChemistry, Biochemistry, Computer Sciencehttps://www.uni-leipzig.de/en/Chemistry, Biochemistry, Computer Science, or relatedDirect admission into the laboratory with BSc or MSc degree, stipend/fees (all years) paid by program/labjens@meilerlab.org
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Jens Meilerwww.meilerlab.orgVanderbilt UniversityComputational Biology: biologics, small molecules, structure predictionBiomedical Informaticshttps://gradschool.vanderbilt.edu/computer science3 rotations in first year, stipend/fees (all years) paid by program/ lab1/15
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Jens Meilerwww.meilerlab.orgVanderbilt University Computational Biology: biologics, small molecules, structure predictionPharmacologyhttps://gradschool.vanderbilt.edu/Pharmacy, Chemistry3 rotations in first year, stipend/fees (all years) paid by program/ lab1/15
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Jeremy Millshttps://biodesign.asu.edu/jeremy-millsArizona State UniversityComputational Protein design, non-canonical amino acids, fluorescent biosensors, structural biologyChemisty and Biochemistryhttps://sms.asu.edu/degrees/gradinterdisciplinary: Chemistry, biochemistry, molecular biology3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. 1/1Giovanna GhirlandaDavid Nutt (david.nutt@asu.edu)Bethany Kartchner (bkolbaba@asu.edu)
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Joanna Sluskyhttp://slusky.compbio.ku.edu/University of KansasMembrane protein designMolecular Bioscienceshttps://molecularbiosciences.ku.edu/any bioscience3 rotations in first year, stipend/fees (all years) paid by program/ lab12/1
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Joanna Sluskyhttp://slusky.compbio.ku.edu/University of KansasMembrane protein designComputational Biologyhttp://compbio.ku.edu/experience coding and biology or chemistry3 rotations in first year, stipend/fees (all years) paid by program/ lab12/1Joanna Slusky (Director of Graduate Admissions for Computaitonal Biology)
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Joanna Sluskyhttps://sluskylab.ku.edu/University of Kansasprotein design and evolution: antibiotic resistance, enzyme design, environmental remediationCenter for Computaional Biologyhttp://compbio.ku.edu/phd-program-1our students come from many academically diverse backgrounds: comp sci, biochem, biophysics, chem and & physics12/4slusky@ku.edu
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John Karanicolashttps://www.karanicolaslab.orgU PennComputational chemical biology (cancer drug discovery, Rosetta-based virtual screening and medicinal chemistry)Biochemistry and Molecular Biophysicshttp://www.med.upenn.edu/bmbgrad/Biochemistry / chemistry / biophysics12/1John Karanicolas (Director of Postdoctoral and Graduate Student Training Program at Fox Chase)Simon Kelow
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John Karanicolashttps://www.karanicolaslab.orgTemple UComputational chemical biology (cancer drug discovery, Rosetta-based virtual screening and medicinal chemistry)Molecular and Cellular Biosciences
https://medicine.temple.edu/education/biomedical-sciences-graduate-program/areas-concentration/molecular-and-cellular
Biochemistry / chemistry / biophysics2/15John Karanicolas (Director of Postdoctoral and Graduate Student Training Program at Fox Chase)Chris Parry
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John Karanicolashttps://www.karanicolaslab.orgDrexel UComputational chemical biology (cancer drug discovery, Rosetta-based virtual screening and medicinal chemistry)Molecular & Cell Biology & Genetics (MCBG)
https://drexel.edu/medicine/academics/graduate-school/molecular-cell-biology-genetics/
Biochemistry / chemistry / biophysics12/1John Karanicolas (Director of Postdoctoral and Graduate Student Training Program at Fox Chase)Victoria Mischley
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Justin SiegelBiochemistry, Molecular, Cellular and Developmental Biologyhttp://bmcdb.ucdavis.edu/Biochemistry3 rotations in first year, stipend/fees (all years) paid by program/ lab12/1
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Justin SiegelIntegrative Genetics and Genomicshttp://igg.ucdavis.edu/index.htmlBiochemistry, Chemistry3 rotations in first year, stipend/fees (all years) paid by program/ lab12/1
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Justin Siegelhttps://sites.google.com/site/ucdsiegellab/homeUC DavisComputationally Guided Enzyme Design & DiscoveryChemistry
https://chemistry.ucdavis.edu/graduate/prospective-students/phd-chemistry
Chemistry, Biochemistry1 quarter rotations, stipend/fees (all years) paid by TA/lab12/1Dean Tantillo
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Justin SiegelBiomedical Engineeringhttps://bmegg.ucdavis.edu/Engineering3 rotations in first year, stipend/fees (all years) paid by program/ lab12/1
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Kevin Drewhttp://ksdrew.github.io/University of Illinois at ChicagoMacromolecular Assembly Identification, Structure, & Function, Peptidomimetic designBiological Scienceshttps://bios.uic.edu/academics/graduate-studies/3 rotations in first year, then selection of thesis advisor. 12/1Yury PolikanovPeter Okkema ( okkema@uic.edu ) Director of Graduate Studies
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Lin Jianghttps://biosciences.gatech.edu/people/lin-jianggeorgia tech college of sciences school of biological sciencesBiochemistry, Biophysics, and Structural Biologyhttps://www.mbi.ucla.edu/bbsb/Biochemistry3 rotations in first year, stipend/fees (all years) paid by program/ lab12/1
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Matthew O'Mearahttps://medicine.umich.edu/dept/dcmb/matthew-omeara-phdUniversity of MichiganComputational PharmacologyProgram in Biomedical Scienceshttps://ogps.med.umich.edu/pibs/Computational Biology3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. 12/1Yang Zhang, Charles L. Brooks III, pibs@umich.edu
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Michael Shirtshttps://www.colorado.edu/lab/shirtsgroup/University of Colorado Bouldersoft materials, thermodynamics, nonnatural oligamersChemical and Biological Engineeringhttps://www.colorado.edu/chbe/academics/graduate-programChemical engineering 12/15Tim Whiteheadchbegrad@colorado.eduLenny Fobe
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Michael Shirtshttps://www.colorado.edu/lab/shirtsgroup/University of Colorado Bouldersoft materials, thermodynamics, nonnatural oligamersIQ Biologyhttps://www.colorado.edu/certificate/iqbiology/interdisciplinary quantitative biology12/1 or 12/15Tim WhiteheadAmber.McDonnell@colorado.edu
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Neil Kinghttp://kinglab.ipd.uw.edu/University of Washington, SeattleDesigning protein-based nanomaterials for medical applicationsBPSDhttp://depts.washington.edu/bpsd/Backgound in biology, physical sciences, or mathematics.3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. 12/2David Baker, Frank DiMaioErin Kirschner kirsche@uw.eduBrian Koepnick: koepnick@uw.edu
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Neil Kinghttp://kinglab.ipd.uw.edu/University of Washington, SeattleDesigning protein-based nanomaterials for medical applicationsBiochemistry
https://depts.washington.edu/biowww/pages/graduate-application.shtml
Background in biology, chemistry or biochemistry3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years. 12/2David Baker Frank DiMaioErin Kirschner kirsche@uw.eduBrian Koepnick: koepnick@uw.edu
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Neil Kinghttp://kinglab.ipd.uw.edu/University of Washington, SeattleDesigning protein-based nanomaterials for medical applicationsMCBhttp://mcb-seattle.edu/Biology, physical or natural sciences or mathematics background3 rotations in first year. Salary, tuition waiver and health insurance covered all years. 12/2David Baker
Rich Gardner and Nina Salama (MCB Co-Directors)
Brian Koepnick: koepnick@uw.edu
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Nik Sgourakishttp://niksgourakis.chemistry.ucsc.eduUC Santa Cruzprotein dynamics, molecular chaperones, MHC-I antigen processing and presentation, T cell receptor interactions, NMR, Hybrid modeling Chemical Biology, Biochemistry and Biophysics https://pbse.ucsc.edu/cb3/index.html12/1
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Ora Furmanhttp://www.cs.huji.ac.il/~foraHebrew University of JerusalemBioinformatics, protein interactions, structure prediction methods, peptide-protein interactions, peptide-based drugsBioinformatics and Genomicshttp://new.huji.ac.il/enInterdisciplinary12/1
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Parisa Hosseinzadehhttps://www.parisahlab.orgUniversity of OregonDesign of functional peptides and proteins, structural understanding of peptidesKnight Campus centerhttps://accelerate.uoregon.edu/Bioengineering (Biomedical engineering, mechanical/electrical engineering, chemical engineering, etc)No rotations, will join a lab. Currently application joing through OSU BioE department (joint program)Calin Plesa, Marian Hettiaratchi
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Parisa Hosseinzadehhttps://www.parisahlab.orgUniversity of OregonDesign of functional peptides and proteins, structural understanding of peptidesBiochemistry/ IMBhttps://chemistry.uoregon.edu/ , http://molbio.uoregon.edu/apply/Chemistry and Biochemsitry (Can be Biology or Physics if applying to IMB through them)3 rotations the first year, stipend/fees (all years) paid by program/ lab1/5Mike Harms, Calin Plesa
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Possu Huang/Rhiju Dasstanford universityprotein design, RNA modeling, ETERNAStanford Biosciences (this umbrella program includes biochemistry, biophysics, structural biology, etc.https://biosciences.stanford.edu/prospective-students/how-to-apply/Broad umbrella program3~4 rotations, 4 year stipend paid for by program12/4
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Possu Huang/Rhiju Dasproteindesign.orgstanford universityprotein design, RNA modeling, ETERNABioengineeringhttps://bioengineering.stanford.edu/academics/graduate-programsengineering quantitative skills3~4 rotations, 2 year stipend paid for by program, favorable for international students12/4
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Richard Bonneau
https://twitter.com/RichBonneauNYU?ref_src=twsrc%5Egoogle%7Ctwcamp%5Eserp%7Ctwgr%5Eauthor
NYUBiology Departmenthttps://as.nyu.edu/biology.htmlCS or stats and biophysics or biology12/1
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Richard Bonneau
https://scholar.google.com/citations?user=Wq8XTykAAAAJ&hl=en&oi=ao
NYUprotein structure-function (rosetta meets ML), peptidiomimetics, protein structure predictionCenter for Data Science https://cds.nyu.eduCS or stats or math12/12
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Roland Dunbrackhttp://dunbrack.fccc.edu https://www.foxchase.org/roland-dunbrack-jrFox Chase Cancer Center - Adjunct Professor at Drexel College of MedicineBioinformatics, antibody design, structure prediction methodsDrexel - MCBG Programhttps://drexel.edu/medicine/academics/graduate-school/molecular-cell-biology-genetics/Biology3 rotations first year, stipend (all years) paid by program first two years / lab after that12/15
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Roland Dunbrackhttp://dunbrack.fccc.edu https://www.foxchase.org/roland-dunbrack-jrFox Chase Cancer Center - Adjunct Professor at University of PennBioinformatics, antibody design, structure prediction methodsPenn - Biochemistry and Molecular Biophysicshttp://www.med.upenn.edu/bmbgrad/Interdisciplinary (Physics, Math, Biology, Engineering, Chemistry, Computer Science)3 Rotations first year, 4 if summer. Stipend paid for 2 years by program, lab funding / fellowship funding after that12/1Simon Kelow (simon.kelow@gmail.com)
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Sagar Kharehttp://sagardkharelab.orgRutgers UniversityEnzyme Design and EngineeringChemistry and Chemical Biologyhttps://chem.rutgers.edu/academics/graduate-programChemistry, Biochemistry2/3 rotations in the first year, first year fellowship, stipend (all years) paid by TA/lab12/15David Case, Darrin York, Jean Baum, Enver Izgu, Andy Niuewkoop, Lu WangGreg Herzog (Program Director)Joseph Lubin
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Sagar Kharehttp://sagardkharelab.orgRutgers UniversityEnzyme Design and EngineeringQuantitative Biomedicinehttps://iqb.rutgers.edu/qbprogramInterdisciplinary (broad umbrella program)2/3 rotations in first year, first year fellowship/TA paid by program, stipend all years paid by lab/TAWei Dai, Arek Kulczyk, Vik Nanda, Yana BrombergSagar Khare (Program Director)William Hansen
83
Sarel Fleishmanwww.fleishmanlab.orgWeizmann Institute of Science, IsraelDesign of protein function: enzymes, antibodies & membrane proteinsLife Sciences, Chemistry or Bioinformaticswww.weizmann.ac.il/feinbergBiochemistry preferredRollingDan Tawfik, Nir London
84
Scott Horowitzhttps://www.horowitzlab.com/University of DenverChaperones and protein folding, FolditChemistry
https://www.du.edu/nsm/departments/chemistryandbiochemistry/degreeprograms/graduate/phddegree.html
Chemistry1-3 rotations in first year, stipend/fees (all years) paid by program/ lab, teaching required in first yearTodd Blankenship at Todd.Blankenship@du.edu
85
Scott Horowitzhttps://www.horowitzlab.com/University of DenverChaperones and protein folding, FolditBiophysicshttps://www.du.edu/nsm/departments/biophysics/index.htmlChemistry, biochemistry, biophysics, biology, or physics background2-3 rotations in first year, stipend/fees (all years) paid by program/ lab, teaching required in first year1/31Mary Shonk at cheminfo@du.edu
86
Seth Cooperhttp://sethcooper.net/Northeastern Universitycitizen science, FolditComputer Sciencehttp://khoury.northeastern.edu/Computer Science
87
Shane Gonenhttps://cryoem.bio.uci.edu/University of California, IrvineCryogenic Electron Microscopy (CryoEM), Computational Protein DesignCellular and Molecular Biologyhttps://cmb.uci.edu/Rotations first year. Salary, tuition and health insurance included. On-campus housing on offer12/1morgano@uci.edu
88
Sinisa Bjelichttp://protein.technologyLinnaeus Universityallosteric covalent modifications, protein-protein interfacesChemistrylnu.seBiochemistry and Chemical Biology
89
Steffen LindertOSBPhttps://osbp.osu.edu/Biochemistry, biophysics3 rotations in first year, stipend/fees (all years) paid by program/ lab12/1
90
Steffen LindertOSU Biophysicshttps://biophysics.osu.edu/Biochemistry, biophysics3 rotations in first year, stipend/fees (all years) paid by program/ lab12/10
91
Steffen Linderthttps://research.cbc.osu.edu/lindert.1/Ohio State Universityprotein structure prediction from MS and cryoEM dataChemistryhttps://chemistry.osu.edu/graduateChemistry, Biochemistry2-3 rotations in first semester, stipend/fees (all years) paid by TA/lab12/15
92
Summer Thymehttps://www.thymelab.org/The University of Alabama at BirminghamNeurobiology; using Rosetta to build tools; testing Rosetta designs in zebrafish models; drug discoveryUmbrella GBS programhttps://www.uab.edu/gbs/home/Interdisciplinary (broad umbrella program)3 rotations in first year, stipend/fees (all years) paid by program/ lab12/1Yuhua Song (docking, non-Rosetta)grad-gbs@uab.eduAri Ginsparg
93
Tanja Kortemmekortemmelab.ucsf.eduUniversity of California San FranciscoProtein design, de novo protein signaling, allostery, flexibility and ensembles, synthetic and quantitative biologyBiophysics (iPQB)https://biophysics.ucsf.eduInterdisciplinary (Physics, Math, Biology, Engineering, Chemistry, Computer Science)NIH training program, 3 rotations in first year, stipend, tuition/fees & health insurance (all years) paid by program/ lab12/1Bill deGrado, James Fraser, Michael Grabe, Matt Jacobson, Aashish Manglik, Andrej Sali, Brian Shoichet, Jim Wells, David Agard, Yifan ChengTanja (Program Director)Dom Grisingher, Ben Orr
94
Tanja Kortemmekortemmelab.ucsf.eduUCSF/UC BerkeleyProtein design, de novo protein signaling, allostery, flexibility and ensembles, synthetic and quantitative biologyBioengineering (joint with UC Berkeley)http://bioegrad.berkeley.eduInterdisciplinary, focus on engineeringNIH training program, 3 rotations in first year, stipend, tuition/fees & health insurance (all years) paid by program/ lab12/15Adam Abate, John Dueber, Jay Keasling, Jim WellsTejal Desai (Program Director)Chris Mathy, Cody Krivacic, Amy Guo
95
Tim Whiteheadhttps://www.colorado.edu/faculty/whitehead/University of Colorado BoulderData-driven protein engineering and design, antibodies, molecular recognition, plant synthetic biologyBiological Engineering
https://www.colorado.edu/chbe/prospective-students/prospective-graduate-students
Biochemistry, focus on engineeringno rotations for Chemical and Biological Eng; rotation TBD for Biological Engineering PhD; 1st semester TA, stipends/fees (all years) paid by lab12/15Kristi Anseth, Chris Bowman, Stephanie Bryant, Jerome Fox, Joel Kaar, Michael Shirts, Kayla Sprenger, Wyatt ShieldsDom de Vangel (Program Director; chbegrad@colorado.edu)
Monica Kirby, Alison Leonard, Zach Baumer, PJ Steiner, Brian Petersen, Mia Keyser, Zoe Davis, Emily Rhodes
96
Tobias Madl
https://forschung.medunigraz.at/fodok/suchen.person_uebersicht?sprache_in=en&ansicht_in=&menue_id_in=101&id_in=80568
Medical University of Graz, AustriaStructural biology & computational structural biologyMolecular Medicinehttps://www.medunigraz.at/phd/phd-programs/molmed/Biochemistry, molecular biology, biophysics, chemistrySeptember 15thtobias.madl@medunigraz.at
97
Tobias Madl
https://forschung.medunigraz.at/fodok/suchen.person_uebersicht?sprache_in=en&ansicht_in=&menue_id_in=101&id_in=80568
Medical University of Graz, AustriaStructural biology & computational structural biologyMetabolic and Cardiovascular Diseasehttps://www.medunigraz.at/DK_MCD/Biochemistry, molecular biology, biophysics, chemistrySeptember 15thtobias.madl@medunigraz.at
98
Vatsan Ramanwww.ramanlab.orgUniv. of Wisconsin-MadisonDesign of small molecule biosensors, microbial regulation and bacteriophagesIntegrated Program in Biochemistryhttps://ipib.wisc.edu/Biochemistry, biophysicsNIH training grants available. Three rotations each 5 weeks long12/1Phil RomeroIvan Rayment (program director)Tony Meger
99
Vladimir Yarov-Yarovoy
https://basicscience.ucdmc.ucdavis.edu/Sack_and_Yarov-Yarovoy_Labs/
UC DavisMembrane proteins, ion channels, protein design, biosensor designBiochemistry, Molecular, Cellular and Developmental Biologyhttp://bmcdb.ucdavis.edu/Biochemistry3 rotations in first year, stipend/fees (all years) paid by program/ lab12/1Justin SiegelBruce Draper (Program Director; bwdraper@ucdavis.edu)
100
Vladimir Yarov-Yarovoy
https://basicscience.ucdmc.ucdavis.edu/Sack_and_Yarov-Yarovoy_Labs/
UC DavisMembrane proteins, ion channels, protein design, biosensor designBiophysicshttp://bph.ucdavis.edu/Biological or physical science or certain engineering disciplinesNIH training programs available, 4 rotations in fall and winter quarters paid by program, stipend/fees after rotations are paid either from PIs grant(s), student fellowship(s), or TAs. 1/2Justin Siegel, Colleen Clancy, Igor VorobyovEle Grandi (Program Director;
egrandi@ucdavis.edu)
Aiyana Emigh, Brandon Harris, Diego Lopez Mateos