Rosetta Commons Graduate Programs

	A	B	C	D	E	F	G	H	I	J	K	L
1	PI	PI Website	Institution	Research areas	Program (PhD unless noted)	Website	Needed background	Program Notes	2019 Deadline	Other Program Faculty of Interest	Program contact	RosettaCommons Student Contact

2	Amelie Stein		University of Copenhagen, Denmark	Structural computational biology, protein stability & degradation	Biology		Biochemistry, molecular biology, biophysics, nanoscience - typically MSc level required		(past)		amelie.stein@bio.ku.dk
3	Bill Schief	https://www.scripps.edu/faculty/schief/	Scripps Research	Vaccine design, protein design, directed evolution, antibodies, HIV, influenza, malaria, ebola, cancer	Scripps		Interdisciplinary	2-3 rotations in first year
4	Birte Höcker	www.proteindesign.uni-bayreuth.de/en/		Evolution & design of protein folds, ligand binding, enzyme engineering	BayNAT (Molecular Biosciences)	www.baynat.uni-bayreuth.de/en/	biochemistry preferred		anytime
5	Brian Kuhlman	http://klab.web.unc.edu/	UNC Chapel Hill	Protein design, vaccine design for dengue virus, light-activatable proteins, protein therapeutics/antibodies	BBSP (Biological & Biomedical Sciences Program): Includes Molecular Biophysics and Computational Biology Programs	https://bbsp.unc.edu/		3 rotations in first year (with option for summer rotation), stipend/fees (all years) paid by program/ lab	12/4
6	Brian Pierce	piercelab.ibbr.umd.edu	University of Maryland	Protein docking, protein design, vaccine design, immune recognition	Biological Sciences	bisi.umd.edu	Interdisciplinary, biology	3 rotations in first year	12/1		Charles Delwiche (Program Director)	Johnathan Guest
7	Brian Pierce				Program in Virology	http://simona065.wixsite.com/umd-virology-program	Virology	NIH training program, available to UMD Biological Science students and others	12/1		Anne Simon (Program Director)	Johnathan Guest
8	Bruno Correia	https://lpdi.epfl.ch/	Ecole Polytechnique Federale de Lausanne	Protein design, synthetic biology, vaccine design, de novo design	Bioengineering and Biotechnology	https://phd.epfl.ch/EDBB	Interdisciplinary, focus on engineering	no rotations - straight to business	https://phd.epfl.ch/cms/site/phd/lang/en/deadlines		Matteo Dal Peraro (Program Director)	Fabian Sesterhenn
9	Byung-Ha Oh	https://sites.google.com/view/tpdsb/home	Korea Advanced Institute of Science and Technology	Therapeutic protein design, Structural biology	Biological Sciences	https://bio.kaist.ac.kr/	Biology	3 rotations in first semester, stipend/fees (all years) paid by TA/lab			iskang@kaist.ac.kr	Bo-Seong Jeong, Seonghoon Kim
10	Colin Smith	smithlab.wesleyan.edu	Wesleyan University	Protein dynamics, protein design, allostery, NMR	Chemistry	http://www.wesleyan.edu/chem/graduates/	Chemistry, Biochemistry	3 rotations in first semester, stipend/fees (all years) paid by TA/lab	1/1	Erika Taylor, Alison O'Neil, Carlos Jimenez Hoyos	Brian Northrop (Program Director)	Josh Dudley
11	Colin Smith	smithlab.wesleyan.edu	Wesleyan University	Protein dynamics, protein design, allostery, NMR	Molecular Biology & Biochemistry	http://www.wesleyan.edu/mbb/grad_studies/	Biochemistry, Biology	2 rotations in first year, stipend/fees (all years) paid by TA/lab	1/1	Ishita Mukerji, Don Oliver, Rich Olson	Scott Holmes (Program Director)	Meagan MacDonald
12	Dan Kulp	https://wistar.org/our-scientists/daniel-kulp	U Penn	Computational and experimental vaccine/antibody/immune modulator design	Bioengineering	http://www.be.seas.upenn.edu/	Biochemistry, Biophysics, Comp. Sci.		12/15	Ravi Radhakrishnan, Scott L. Diamond, Andrew Tsourkas
13	Dan Kulp	https://wistar.org/our-scientists/daniel-kulp	U Penn	Computational and experimental vaccine/antibody/immune modulator design	Microbiology, Virology, and Parasitology	https://www.med.upenn.edu/camb/mvp.shtml	Immunology, Virology		12/15	James Wilson, John Wherry, Carl June
14	Dan Kulp	https://wistar.org/our-scientists/daniel-kulp	Wistar Institute	Computational and experimental vaccine/antibody/immune modulator design	Vaccine & Immunotherapy Center	https://wistar.org/research-discoveries/vaccine-immunotherapy-center	Structural biology, immunology, bioengineering		-	David Weiner, Luis J. Montaner
15	David Baker	http://www.bakerlab.org/	University of Washington, Seattle	Protein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder design	Biochemistry	https://depts.washington.edu/biowww/pages/graduate-application.shtml	Background in biology, chemistry or biochemistry	3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years.	12/2	Neil King, Frank DiMaio	Erin Kirschner kirsche@uw.edu	Brian Koepnick: koepnick@uw.edu
16	David Baker	http://www.bakerlab.org/	University of Washington, Seattle	Protein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder design	BPSD	http://depts.washington.edu/bpsd/	Backgound in biology, physical sciences, or mathematics.	3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years.	12/2	Neil King, Frank DiMaio	Erin Kirschner kirsche@uw.edu	Brian Koepnick: koepnick@uw.edu
17	David Baker	http://www.bakerlab.org/	University of Washington, Seattle	Protein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder design	MCB	http://mcb-seattle.edu/	Biology, physical or natural sciences or mathematics background	3 rotations in first year. Salary, tuition waiver and health insurance covered all years.	12/2	Neil King	Rich Gardner and Nina Salama (MCB Co-Directors)	Brian Koepnick: koepnick@uw.edu
18	David Baker	http://www.bakerlab.org/	University of Washington, Seattle	Protein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder design	Bioengineering	https://bioe.uw.edu/academic-programs/graduate/phd/	Bioengineering, Chemical engineering, Chemistry, Physics, Biology, Computer science, Electrical engineering	1-2 rotations during first year, PhD students fully funded through RA/TAship.	12/1		Kalei L. Combs kaleic@uw.edu	Brian Koepnick: koepnick@uw.edu
19	David Baker	http://www.bakerlab.org/	University of Washington, Seattle	Protein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder design	Genome Sciences	http://www.gs.washington.edu/index.htm	None needed, most come with experimental backgrounds (Biology, Biochemistry) or computational (Computer Science, etc), ideal candidate have both.	Students rotate through three labs their first year before selecting a thesis lab. Funding is provided by the department during this time.	12/1		Brian Giebel: bgiebel@uw.edu	Brian Koepnick: koepnick@uw.edu
20	David Baker	http://www.bakerlab.org/	University of Washington, Seattle	Protein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder design	Molecular Engineering	https://www.moles.washington.edu/phd/	The MolE PhD program does not require students to have a degree in a particular discipline but does require the student hold a BS or BA degree from an engineering or natural sciences program. The MolE PhD program accepts students with diverse backgrounds in engineering, science, or medicine.	International and domestic students are funded for the first 3 academic quarters by the MolES Institute and thereafter by the student’s Principal Investigator (PI).	12/15		Paul Neubert, Counseling Services Coordinator, 206-221-6542, pneubert@uw.edu.	Brian Koepnick: koepnick@uw.edu
21	David Baker	http://www.bakerlab.org/	University of Washington, Seattle	Protein design, structure prediction, peptide design, protein logic gates, materials design, ligand binder design	Computer Science	https://www.cs.washington.edu/academics/phd	Computer Science; Computer Engineeirng	3 years of guaranteed funding (tuition, stipend, health insurance) through RA or TA positions. Assigned temporary advisor to help mentor new students.	12/15	Su-In Lee, Larry Ruzzo, Georg Seelig	Elise Dorough (Director of Graduate Student Services) elised@cs.washington.edu	Brian Koepnick: koepnick@uw.edu
22	Eric Fischer	fischerlab.org	Harvard Medical School/Dana-Farber Cancer Institute	Structural biology & computational structural biology/Chemical biology/Protein-protein-ligand docking/Protein design	Harvard Systems, Synthetic, and Quantitative Biology PhD Program	https://sysbiophd.harvard.edu/	Interdisciplinary, quantitative	2-4 rotations, stipend/fees paid by program/lab			elizabeth_pomerantz@hms.harvard.edu
23	Eric Fischer	fischerlab.org	Harvard Medical School/Dana-Farber Cancer Institute	Structural biology & computational structural biology/Chemical biology/Protein-protein-ligand docking/Protein design	Harvard Chemical Biology PhD Program	https://chembiophd.harvard.edu/	Chemical biology	2-4 rotations, stipend/fees paid by program/lab			jason_millberg@hms.harvard.edu
24	Eric Fischer	fischerlab.org	Harvard Medical School/Dana-Farber Cancer Institute	Structural biology & computational structural biology/Chemical biology/Protein-protein-ligand docking/Protein design	Harvard PhD Program in Biological and Biomedical Sciences	https://www.hms.harvard.edu/dms/bbs/	Interdisciplinary biological sciences, umbrella program	2-4 rotations, stipend/fees paid by program/lab			dymecki@genetics.med.harvard.edu
25	Eva-Maria Strauch	http://www.strauchlab.com/	University of Georgia	Protein design, protein therapeutics and immunogens targeting viral surface proteins, directed evolution	Integrated life sciences, pharmaceutical & biomedical sciences				-
26	Fabio Parmeggiani	http://www.bris.ac.uk/brissynbio/people/369828	University of Bristol	Modular protein design, repeat proteins, protein origami	Synthetic Biology (under renewal)	http://www.synbio-cdt.ac.uk/			3/9
27	Firas Khatib	http://www.cis.umassd.edu/~fkhatib/	UMass Dartmouth	Foldit, Citizen Science/Gamification, Computational Biology, Protein Structure Determination/Prediction	Computer and Information Science	https://www.umassd.edu/engineering/cis/graduate/			https://www.umassd.edu/graduate/deadlinesandtestrequirements/
28	Frank DiMaio	https://dimaiolab.ipd.uw.edu/	University of Washington, Seattle	Computational structural biology	Biochemistry	https://depts.washington.edu/biowww/pages/graduate-application.shtml	Background in biology, chemistry or biochemistry	3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years.	12/2	Neil King, David Baker	Erin Kirschner kirsche@uw.edu	Brian Koepnick: koepnick@uw.edu
29	Frank DiMaio	https://dimaiolab.ipd.uw.edu/	University of Washington, Seattle	Computational structural biology	BPSD	http://depts.washington.edu/bpsd/	Backgound in biology, physical sciences, or mathematics.	3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years.	12/2	Neil King, David Baker	Erin Kirschner kirsche@uw.edu	Brian Koepnick: koepnick@uw.edu
30	Gabriel Rocklin	http://www.rocklinlab.org	Northwestern University	Protein biophysics, protein design, protein therapeutics, mass spec proteomics	Driskill Graduate Program in Life Sciences	https://www.feinberg.northwestern.edu/sites/dgp/			Dec 1 2018	https://syntheticbiology.northwestern.edu
31	Gabriel Rocklin	http://www.rocklinlab.org	Northwestern University	Protein biophysics, protein design, protein therapeutics, mass spec proteomics	Interdisciplinary Biological Sciences Graduate Program	https://www.ibis.northwestern.edu			Dec 15 2018	https://syntheticbiology.northwestern.edu
32	Gustav Oberdorfer	TBD	Graz University of Technology	Design of functional proteins: enzymes, small molecule binding proteins	Biochemistry and Molecular Biology	https://www.biochemistry.tugraz.at/	Structural Biology, Biochemistry, Bioengineering		-
33	Ingemar André	http://andrelab.org	Lund University	Protein assembly design, protein evolution, ensemble modeling with experimental data	Biochemistry and Molecular Biophysics	http://www.cmps.lu.se	Biochemistry, biophysics, bioinformatics
34	Jacob Corn	cornlab.org	ETH Zurich	Genome editing, DNA damage, protein engineering. Lab uses Rosetta but does not do development.	Biology	https://www.biol.ethz.ch/en/doctoral-studies.html	Interest in cell biology	Both program admit and direct admit are possible	12/1, 7/1
35	James Moody	https://www.chem.byu.edu/faculty/james-d-moody/	Brigham Young University, Provo, Utah	Structural Biology and Enzymology, Protein-based materials, Protein crystallization techniques, Enzyme design	Chemistry and Biochemistry	https://www.chem.byu.edu/graduate-students/apply-now/	Interdisciplinary	Rotations Fall semester paid by TA-ship, stipend/fees after rotations are paid either from PIs grant(s), student fellowship(s), or TA-ships.	1/5/19		chemgradsec@chem.byu.edu	Josh Tseng
36	Jeffrey Gray	graylab.jhu.edu	Johns Hopkins	Protein docking, antibodies, glycoproteins, membrane proteins, biomineralization	Program in Molecular Biophysics	pmb.jhu.edu	Interdisciplinary: biology, chemistry, biochemistry, engineering, math, CS	NIH training program, 3 rotations in first year, stipend/fees (all years) paid by program/ lab	12/1	Maggie Johnson, Elijah Roberts, Albert Lau, Doug Barrick, Karen Fleming (40 faculty)	Doug Barrick (Program Director)	Morgan Nance
37	Jeffrey Gray				Biomedical Engineering	https://www.bme.jhu.edu/
38	Jeffrey Gray				Chemical & Biomolecular Engineering	chembe.jhu.edu	Typically ChE or BioE	ChemBE department places students in labs in October of first year	12/15	Yannis Kevrekidis, Paulette Clancy, Marc Ostermeier, Jamie Spangler	David Gracias (Director of PhD Program)	Rebecca Alford, Ameya Harmalkar
39	Jeffrey Gray				Master's in ChemBE	chembe.jhu.edu	Typically ChE or BioE, but also broad including chemistry, biochem, biology, CS	6 classes + a research thesis = MS degree. Two year program.	12/15	Yannis Kevrekidis, Paulette Clancy, Marc Ostermeier, Jamie Spangler	Joelle Frechette (Director of MS Program)	Joseph Lubin (now @Rutgers), Xiyao Long (now @Drexel)
40	Jens Meiler	www.meilerlab.org	Vanderbilt University	Computational Biology: biologics, small molecules, structure prediction	Chemistry	https://gradschool.vanderbilt.edu/	Chemistry, Biochemistry	3 rotations in first year, stipend/fees (all years) paid by program/ lab	1/15
41	Jens Meiler	www.meilerlab.org	Vanderbilt University	Computational Biology: biologics, small molecules, structure prediction	Quantitative Chemical Biology	https://gradschool.vanderbilt.edu/	any quantitative major (CS, Math, Physics)	3 rotations in first year, stipend/fees (all years) paid by program/ lab	1/15
42	Jens Meiler	www.meilerlab.org	Vanderbilt University	Computational Biology: biologics, small molecules, structure prediction	Biomedical Informatics	https://gradschool.vanderbilt.edu/	computer science	3 rotations in first year, stipend/fees (all years) paid by program/ lab	1/15
43	Jens Meiler		Vanderbilt University	Computational Biology: biologics, small molecules, structure prediction	Pharmacology	https://gradschool.vanderbilt.edu/	Pharmacy, Chemistry	3 rotations in first year, stipend/fees (all years) paid by program/ lab	1/15
44	Joanna Slusky	http://slusky.compbio.ku.edu/	University of Kansas	Membrane protein design	Computational Biology	http://compbio.ku.edu/	experience coding and biology or chemistry	3 rotations in first year, stipend/fees (all years) paid by program/ lab	12/1		Joanna Slusky (Director of Graduate Admissions for Computaitonal Biology)
45	Joanna Slusky	http://slusky.compbio.ku.edu/	University of Kansas	Membrane protein design	Molecular Biosciences	https://molecularbiosciences.ku.edu/	any bioscience	3 rotations in first year, stipend/fees (all years) paid by program/ lab	12/1
46	John Karanicolas	https://www.karanicolaslab.org	U Penn	Computational chemical biology (cancer drug discovery, Rosetta-based virtual screening and medicinal chemistry)	Biochemistry and Molecular Biophysics	http://www.med.upenn.edu/bmbgrad/	Biochemistry / chemistry / biophysics		12/1		John Karanicolas (Director of Postdoctoral and Graduate Student Training Program at Fox Chase)	Simon Kelow
47	John Karanicolas	https://www.karanicolaslab.org	Temple U	Computational chemical biology (cancer drug discovery, Rosetta-based virtual screening and medicinal chemistry)	Molecular and Cellular Biosciences	https://medicine.temple.edu/education/biomedical-sciences-graduate-program/areas-concentration/molecular-and-cellular	Biochemistry / chemistry / biophysics		2/15		John Karanicolas (Director of Postdoctoral and Graduate Student Training Program at Fox Chase)	Chris Parry
48	Justin Siegel	https://sites.google.com/site/ucdsiegellab/home	UC Davis	Computationally Guided Enzyme Design & Discovery	Chemistry	https://chemistry.ucdavis.edu/graduate/prospective-students/phd-chemistry	Chemistry, Biochemistry	1 quarter rotations, stipend/fees (all years) paid by TA/lab	12/1	Dean Tantillo
49	Justin Siegel				Biochemistry, Molecular, Cellular and Developmental Biology	http://bmcdb.ucdavis.edu/	Biochemistry	3 rotations in first year, stipend/fees (all years) paid by program/ lab	12/1
50	Justin Siegel				Integrative Genetics and Genomics	http://igg.ucdavis.edu/index.html	Biochemistry, Chemistry	3 rotations in first year, stipend/fees (all years) paid by program/ lab	12/1
51	Justin Siegel				Biomedical Engineering	https://bmegg.ucdavis.edu/	Engineering	3 rotations in first year, stipend/fees (all years) paid by program/ lab	12/1
52	Michael Shirts	https://www.colorado.edu/lab/shirtsgroup/	University of Colorado Boulder	soft materials, thermodynamics, nonnatural oligamers	Chemical and Biological Engineering	https://www.colorado.edu/chbe/academics/graduate-program	Chemical engineering		12/15	Tim Whitehead	chbegrad@colorado.edu	Lenny Fobe
53	Michael Shirts	https://www.colorado.edu/lab/shirtsgroup/	University of Colorado Boulder	soft materials, thermodynamics, nonnatural oligamers	IQ Biology	https://www.colorado.edu/certificate/iqbiology/	interdisciplinary quantitative biology		12/1 or 12/15	Tim Whitehead	Amber.McDonnell@colorado.edu
54	Neil King	http://kinglab.ipd.uw.edu/	University of Washington, Seattle	Designing protein-based nanomaterials for medical applications	Biochemistry	https://depts.washington.edu/biowww/pages/graduate-application.shtml	Background in biology, chemistry or biochemistry	3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years.	12/2	David Baker Frank DiMaio	Erin Kirschner kirsche@uw.edu	Brian Koepnick: koepnick@uw.edu
55	Neil King	http://kinglab.ipd.uw.edu/	University of Washington, Seattle	Designing protein-based nanomaterials for medical applications	BPSD	http://depts.washington.edu/bpsd/	Backgound in biology, physical sciences, or mathematics.	3 rotations in first year, then selection of thesis advisor. Salary, tuition waiver and health insurance covered all years.	12/2	David Baker, Frank DiMaio	Erin Kirschner kirsche@uw.edu	Brian Koepnick: koepnick@uw.edu
56	Neil King	http://kinglab.ipd.uw.edu/	University of Washington, Seattle	Designing protein-based nanomaterials for medical applications	MCB	http://mcb-seattle.edu/	Biology, physical or natural sciences or mathematics background	3 rotations in first year. Salary, tuition waiver and health insurance covered all years.	12/2	David Baker	Rich Gardner and Nina Salama (MCB Co-Directors)	Brian Koepnick: koepnick@uw.edu
57	Nik Sourakis	http://niksgourakis.chemistry.ucsc.edu	UC Santa Cruz	protein dynamics, molecular chaperones, MHC-I antigen processing and presentation, T cell receptor interactions, NMR, Hybrid modeling	Chemical Biology, Biochemistry and Biophysics	https://pbse.ucsc.edu/cb3/index.html			12/1
58	Ora Furman	http://www.cs.huji.ac.il/~fora	Hebrew University of Jerusalem	Bioinformatics, protein interactions, structure prediction methods, peptide-protein interactions, peptide-based drugs	Bioinformatics and Genomics	http://new.huji.ac.il/en	Interdisciplinary		12/1
59	Possu Huang/Rhiju Das	proteindesign.org	stanford university	protein design, RNA modeling, ETERNA	Bioengineering	https://bioengineering.stanford.edu/academics/graduate-programs	engineering quantitative skills	3~4 rotations, 2 year stipend paid for by program, favorable for international students	12/4
60	Possu Huang/Rhiju Das		stanford university	protein design, RNA modeling, ETERNA	Stanford Biosciences (this umbrella program includes biochemistry, biophysics, structural biology, etc.	https://biosciences.stanford.edu/prospective-students/how-to-apply/	Broad umbrella program	3~4 rotations, 4 year stipend paid for by program	12/4
61	Richard Bonneau	https://scholar.google.com/citations?user=Wq8XTykAAAAJ&hl=en&oi=ao	NYU	protein structure-function (rosetta meets ML), peptidiomimetics, protein structure prediction	Center for Data Science	https://cds.nyu.edu	CS or stats or math		12/12
62	Richard Bonneau	https://twitter.com/RichBonneauNYU?ref_src=twsrc%5Egoogle%7Ctwcamp%5Eserp%7Ctwgr%5Eauthor	NYU		Biology Department	https://as.nyu.edu/biology.html	CS or stats and biophysics or biology		12/1
63	Roland Dunbrack	http://dunbrack.fccc.edu https://www.foxchase.org/roland-dunbrack-jr	Fox Chase Cancer Center - Adjunct Professor at Drexel College of Medicine	Bioinformatics, antibody design, structure prediction methods	Drexel - MCBG Program	https://drexel.edu/medicine/academics/graduate-school/molecular-cell-biology-genetics/	Biology	3 rotations first year, stipend (all years) paid by program first two years / lab after that	12/15
64	Roland Dunbrack	http://dunbrack.fccc.edu https://www.foxchase.org/roland-dunbrack-jr	Fox Chase Cancer Center - Adjunct Professor at University of Penn	Bioinformatics, antibody design, structure prediction methods	Penn - Biochemistry and Molecular Biophysics	http://www.med.upenn.edu/bmbgrad/	Interdisciplinary (Physics, Math, Biology, Engineering, Chemistry, Computer Science)	3 Rotations first year, 4 if summer. Stipend paid for 2 years by program, lab funding / fellowship funding after that	12/1			Simon Kelow (simon.kelow@gmail.com)
65	Sagar Khare	http://sagardkharelab.org	Rutgers University	Enzyme Design and Engineering	Chemistry and Chemical Biology	https://chem.rutgers.edu/academics/graduate-program	Chemistry, Biochemistry	2/3 rotations in the first year, first year fellowship, stipend (all years) paid by TA/lab	12/15	David Case, Darrin York, Jean Baum, Enver Izgu, Andy Niuewkoop, Lu Wang	Greg Herzog (Program Director)	Joseph Lubin
66	Sagar Khare	http://sagardkharelab.org	Rutgers University	Enzyme Design and Engineering	Quantitative Biomedicine	https://iqb.rutgers.edu/qbprogram	Interdisciplinary (broad umbrella program)	2/3 rotations in first year, first year fellowship/TA paid by program, stipend all years paid by lab/TA		Wei Dai, Arek Kulczyk, Vik Nanda, Yana Bromberg	Sagar Khare (Program Director)	William Hansen
67	Sarel Fleishman	www.fleishmanlab.org	Weizmann Institute of Science, Israel	Design of protein function: enzymes, antibodies & membrane proteins	Life Sciences, Chemistry or Bioinformatics	www.weizmann.ac.il/feinberg	Biochemistry preferred		Rolling	Dan Tawfik, Nir London
68	Scott Horowitz	https://sites.google.com/umich.edu/horowitzlab/home	University of Denver	Chaperones and protein folding, Foldit	Chemistry	https://www.du.edu/nsm/departments/chemistryandbiochemistry/degreeprograms/graduate/phddegree.html	Chemistry	1-3 rotations in first year, stipend/fees (all years) paid by program/ lab, teaching required in first year			Todd Blankenship at Todd.Blankenship@du.edu
69	Scott Horowitz	https://sites.google.com/umich.edu/horowitzlab/home	University of Denver	Chaperones and protein folding, Foldit	Biophysics	https://www.du.edu/nsm/departments/biophysics/index.html	Chemistry, biochemistry, biophysics, biology, or physics background	2-3 rotations in first year, stipend/fees (all years) paid by program/ lab, teaching required in first year	1/31		Mary Shonk at cheminfo@du.edu
70	Seth Cooper	http://sethcooper.net/	Northeastern University	citizen science, Foldit	Computer Science	http://khoury.northeastern.edu/	Computer Science
71	Sinisa Bjelic	http://protein.technology	Linnaeus University	allosteric covalent modifications, protein-protein interfaces	Chemistry	lnu.se	Biochemistry and Chemical Biology
72	Steffen Lindert	https://research.cbc.osu.edu/lindert.1/	Ohio State University	protein structure prediction from MS and cryoEM data	Chemistry	https://chemistry.osu.edu/graduate	Chemistry, Biochemistry	2-3 rotations in first semester, stipend/fees (all years) paid by TA/lab	12/15
73	Steffen Lindert				OSBP	https://osbp.osu.edu/	Biochemistry, biophysics	3 rotations in first year, stipend/fees (all years) paid by program/ lab	12/1
74	Steffen Lindert				OSU Biophysics	https://biophysics.osu.edu/	Biochemistry, biophysics	3 rotations in first year, stipend/fees (all years) paid by program/ lab	12/10
75	Tanja Kortemme	kortemmelab.ucsf.edu	UCSF	Protein design, flexibility and ensembles, sampling, biosensors, interfaces, synthetic and quantitative biology	Biophysics (iPQB)	https://biophysics.ucsf.edu	Interdisciplinary (Physics, Math, Biology, Engineering, Chemistry, Computer Science)	NIH training program, 3 rotations in first year, stipend/fees (all years) paid by program/ lab	12/1	Bill deGrado, Jaime Fraser, Michael Grabe, Matt Jacobson, Aashish Manglik, Andrej Sali, Brian Shoichet, Jim Wells	Tanja (Program Director)	Amanda Loshbaugh, Samuel Thompson
76	Tanja Kortemme		UCSF/UC Berkeley		Bioengineering (joint with UC Berkeley)	http://bioegrad.berkeley.edu	Interdisciplinary, focus on engineering	NIH training program, 3 rotations in first year, stipend/fees (all years) paid by program/ lab	12/15	Adam Abate, John Dueber, Hana El Samad, Jay Keasling, Jim Wells	Todd McDevitt (Program Director)	James Lucas, Xingjie Pan
77	Tim Whitehead	https://www.colorado.edu/faculty/whitehead/	University of Colorado Boulder	Data-driven protein engineering and design, antibodies, molecular recognition, plant synthetic biology	Biological Engineering	https://www.colorado.edu/chbe/prospective-students/prospective-graduate-students	Biochemistry, focus on engineering	no rotations for Chemical and Biological Eng; rotation TBD for Biological Engineering PhD; 1st semester TA, stipends/fees (all years) paid by lab	12/15	Kristi Anseth, Chris Bowman, Stephanie Bryant, Jerome Fox, Joel Kaar, Michael Shirts	Dom de Vangel (Program Director; chbegrad@colorado.edu)	Monica Kirby
78	Tobias Madl	https://forschung.medunigraz.at/fodok/suchen.person_uebersicht?sprache_in=en&ansicht_in=&menue_id_in=101&id_in=80568	Medical University of Graz, Austria	Structural biology & computational structural biology	Molecular Medicine	https://www.medunigraz.at/phd/phd-programs/molmed/	Biochemistry, molecular biology, biophysics, chemistry		September 15th		tobias.madl@medunigraz.at
79	Tobias Madl	https://forschung.medunigraz.at/fodok/suchen.person_uebersicht?sprache_in=en&ansicht_in=&menue_id_in=101&id_in=80568	Medical University of Graz, Austria	Structural biology & computational structural biology	Metabolic and Cardiovascular Disease	https://www.medunigraz.at/DK_MCD/	Biochemistry, molecular biology, biophysics, chemistry		September 15th		tobias.madl@medunigraz.at
80	Vatsan Raman	www.ramanlab.org	Univ. of Wisconsin-Madison	Design of small molecule biosensors, microbial regulation and bacteriophages	Integrated Program in Biochemistry	https://ipib.wisc.edu/	Biochemistry, biophysics	NIH training grants available. Three rotations each 5 weeks long	12/1	Phil Romero	Ivan Rayment (program director)	Tony Meger
81	Vladimir Yarov-Yarovoy	https://basicscience.ucdmc.ucdavis.edu/Sack_and_Yarov-Yarovoy_Labs/	UC Davis	Membrane proteins, ion channels, protein design, biosensor design	Biophysics	http://bph.ucdavis.edu/	Biological or physical science or certain engineering disciplines	NIH training programs available, 4 rotations in fall and winter quarters paid by program, stipend/fees after rotations are paid either from PIs grant(s), student fellowship(s), or TAs.	1/2	Justin Siegel, Colleen Clancy, Igor Vorobyov	Atul Parikh (Program Director; anparikh@ucdavis.edu)	Phuong Tran Nguyen, Jan Maly, Aiyana Emigh, Brandon Harris
82	Vladimir Yarov-Yarovoy				Biochemistry, Molecular, Cellular and Developmental Biology	http://bmcdb.ucdavis.edu/	Biochemistry	3 rotations in first year, stipend/fees (all years) paid by program/ lab	12/1	Justin Siegel	Bruce Draper (Program Director; bwdraper@ucdavis.edu)
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