ABCDEFGHIJKLMNOPQRSTUVWXYZAAABACADAEAFAGAHAIAJAKALAM
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ANISEED IDPubmed IDSpeciesAuthorsYearTotal nb of experimentsExperiment (wt)Experiment (mutant)Nb of regulatory regionsNb of hours to curate the article
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16621600895CirobuD’Aniello, E., Pezzotti, M.R., Locascio, A., Branno2011554872210 minutes ??
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35022848672CirobuKusakabe TG, Sakai T, Aoyama M, Kitajima Y, Miyamoto Y, Takigawa T, Daido Y, Fujiwara K, Terashima Y, Sugiuchi Y, Matassi G, Yagisawa H, Park MK, Satake H, Tsuda M.2012111105?
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35223832845CirobuKobayashi K, Yamada L, Satou Y, Satoh N.20131440?
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17521303852CirobuStolfi A, Levine M20114612?
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34834000300CirobuTakafumi Kawai, Masaki Hashimoto, Natsuki Eguchi, Junko M Nishino, Yuka Jinno, Risa Mori-Kreiner, Måns Aspåker, Daijiro Chiba, Yukio Ohtsuka, Akira Kawanabe, Atsuo S Nishino, Yasushi Okamura2021502h
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35135408864CirobuAnnamaria Locascio, Quirino Attilio Vassalli, Immacolata Castellano and Anna Palumbo202273?
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13519406117HaroreKumano G, Nishida H2009430?
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13421782435HaroreKumano G, Takatori N, Negishi T, Takada T, Nishida H2011530?
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1321610035HaroreHashimoto H, Enomoto T, Kumano G, Nishida H2011160?
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35322732083HaroreMaeng S, Lee JH, Choi SC, Kim MA, Shin YK, Sohn YC2012130?
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9622233491CirobuYoshida R, Sasakura Y2012120Marion
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35529277977CirobuRigon F, Gasparini F, Shimeld S, Candiani S, Manni L201870MarionWaiting for author's check - I could not enter Fig3g-i (direct detection of AChE activity) and Fig3k-l (as GABA is not a gene). - the ontology seems to be incomplete at adult stage (oral syphon is missing for instance), juvenile ontology is missingDD 4.2.23: ISH have no stained regions because of bad ontology at stage 39. Reste enhancer detection lines
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33528770040CirobuPalmquist K, Davidson B2017111MarionEntré attente mail auteur pour certaines questions précises (Mesp enhancer ID + stages for MolTools). Phenotype experiements not entered.Y
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35916950241HaroreKumano G, Yamaguchi S, Nishida H2006710MarionBad gene model, FoxD split into Harore.CG.MTP2014.S128.g13119 and Harore.CG.MTP2014.S128.g04021 - pdf sent by Gaku Kumano - Fig3, control vegetal view, injected animal view, should I describe vegetal side of injected embryos ? - Fig3I : 6A-cell stage in the picture, not 110 ? - FigS3, expression profiles of FoxDb not sure at all. FigS1JKL, Fgf9/16/20 expression profiles not sure. - Some embryo only animal view, should we assume vegetal wt expression profile is maintained ? (eg Bra Fig 6-7) - Blastomere isolation experiments not entered (Fig5) - Commercial antigene immunostaining and AP staining not entered (no gene model).Y
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36420478299HaroreKumano G, Kawai N, Nishida H201019Marionpdf sent by Gaku Kumano - many copies of m.actin, one was arbitrarly chosen for ISH (Genbank ID D10067.1) - Not entered : Fig1, Fig3, Fig6ABEF because morphological data is not suitable and Fig2, as alpha-tubulin Gene ID is unknownY waiting for author's check
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36217216525HaroreMiyazaki Y, Nishida H, Kumano G200723pdf sent by Gaku KumanoY waiting for author's check, I arbitrarily selected one gene ID for m.actin, but I keep track of the existence of very similar orthologs (which are very likely to be recognized by the same probe)
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21028289133CirobuYoshida.. Sasakura2017353Y waiting for author's check, pdf ok - Transgenic line of enhancer trap - cisREG>gene-TALEN. - juvenile swimming larva incomplete ontology
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9422573621CirobuSasakura.. Fujiwara2012Ongoing/stuck
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35622595514CirobuWoznica.. Davidson2012Ongoing/stuck
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35423391688CirobuIzzi.. Meedel2013222
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35727707797CirobuImai...Satou2016128MarionEntered, TFBS entered. Constructs CONS00001638 to 1645 not linked to article card.
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37128348228CirobuHirai.. Okado201740
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36122889275HaroreYoshida.. Saiga2012188Léa/Delpine
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18920671188CirobuStolfi.. Christiaen20104510CONS00001646 to 1657 missing from article card, - Morphological modification cannot be annotated - Incomplete ontology for swimming larvae and juveniles
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36833191918Cr, Hr, Pm, MaCoulcher.. Darras2020Ongoing
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37531552663CirobuHudson2020OngoingLéa
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36924720515HaroreKumano.. Nishida2014390
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13123674602CirobuJosé-Edwards.. Di Gregorio201353Ongoing13
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34922923581CirobuImai.. Satou2012340
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17228520732CirobuTokuhiro... Satou2017277Léa
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37729709000HaroreMiyaoku.. Kumano2018190
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37831904374HaroreZheng.. Kumano2020540
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37937403333Moocul CirobuPopsuj.. Stolfi2023Ongoing
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37632665244Phmamm CirobuFiuza.. Lemaire2020Ongoing
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10124204212CirobuKatilaka.. Di Gregorio2013460
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33727351101CirobuHudson.. Yasuo20161001
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35585239CirobuPapadogianis.. Shimeld2022Ongoing
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104459795
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MarionEntered, TFBS entered. Constructs CONS00001638 to 1645 not linked to article card.Y35727707797Antagonism between β-catenin and Gata.a sequentially segregates the germ layers of ascidian embryos.Imai...Satou2016marginal cell lineage(few experiments)11h17/01/2023yutaka@ascidian.zool.kyoto-u.ac.jp,Y
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MarionCONS00001646 to 1657 missing from article card, - Morphological modification cannot be annotated - Incomplete ontology for swimming larvae and juvenilesY18920671188Early chordate origins of the vertebrate second heart fieldStolfi2010Heart specification, larva, post-metamorphicMesp, Islet, FoxF reporter constructs, ISH COE, Tbx1/10, WT and perturbed16/03/2023alberto.stolfi@biosci.gatech.edu
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Marionpdf ok - Transgenic line of enhancer trap - cisREG>gene-TALEN. - juvenile swimming larva incomplete ontologyY21028289133Hox-mediated endodermal identity patterns pharyngeal muscle formation in the chordate pharynxYoshida...Sasakura 201728/03/2023kyoshida@shimoda.tsukuba.ac.jp (not working ) sasakura@shimoda.tsukuba.ac.jp
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CURATED but annotated previously
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ANISEED IDPubmed IDSpeciesAuthorsYearTotal nb of experimentsExperiment (wt)Experiment (mutant)Nb of regulatory regionsNb of hours to curate the article
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17723049976CirobuPasini.. Lemaire2012764
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18430661644Phmamm CirobuMadgwick... Lemaire201913583
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33217015434CirobuDavidson.. Levine2006413
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16826684323CirobuJosé Edwards.. Di Gregorio20158676
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33800166
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