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SupervisorContactExternal GroupTopic titleCommentsOpen / Taken
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Zakariazakaria.louadi@wzw.tum.de
Construction of a tissue-specific domain-domain / PPI networks from transcriptomics and splicing data.
Method/Database (Python), Based on DIGGER 's join graph (doi.org/10.1093/nar/gkaa768)
Taken
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Manuelamauela.lautizi@tum.deFast C++ implementation of survival module detection
implementation-focused, C++ needed
Open
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Sepisadegh@wzw.tum.de
Investigating the relation between disease comorbidity patterns and underlying structure of cellular networks
java/python, applied
Open
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Chit Tongchit-tong.lio@wzw.tum.deTime series cluster analysis of alternative-spliced genes in cardiac maturation in mouse
python, applied/method
Taken
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Manuelamanuela.lautizi@tum.deGraph visualization tool of gene modules enrichment
R or Python package development
Open
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Monicamatchado@wzw.tum.deDevelopment of a simulator for compositional data
R or Python package development
Open
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Markusmarkus.list@wzw.tum.deDNA methylation heterogeneity in plantsTaken
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Markusmarkus.list@wzw.tum.deFinotello Lab (Innsbruck)Cell type deconvolution of bulk RNA-seq data using k-mer signaturesR or pythonTaken
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Markusmarkus.list@wzw.tum.deUsing Cell Ontology for assessing cell type similarity in single cell RNA-seq data
R (seurat) or preferably python (scanpy), analysis and single cell data processing
Reserved
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MarkusHmarkus.daniel.hoffmann@tum.deMasterThesis: GenEpiSeeker for genregulatory networks to find SNPs in motifs
Python/R, C++ is needed
Open
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MarkusHmarkus.daniel.hoffmann@tum.de
https://watermark.silverchair.com/zcaa042.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAtEwggLNBgkqhkiG9w0BBwagggK-MIICugIBADCCArMGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMqMYA-132jSDMhTmPAgEQgIIChOBFcIooE5HXrl73HwoIkO8-uzCPwOnlWlcNSAF9JOqYW1HIbEiUpJPsVc9soOAnFMArJQRgrKwELQi42v-RhaOHXge21BpAN_iZLLRVKj5iknHq8wLPwFFmvHFE7KimqwJedDw20Hr_4zo_sATJqpdzpNK4vxvSeKEzjYrrPAKg27jLgfqPMvJOJU2xa1hkKX_YiVAjHrCOcQFKjyUQgiBEYQmIZmmGGT-Rknr_oCbLeMoSS0zywkU3XG19abC72Gy0wUh2BYGwoxYaTnzFozTMu1ZYIax7WJdy0n-hdMqDJ3LfpNjAfZgJ8CH58-c5CLnUQMAiXX7aIdp94kfaSPP55iNLIqdZjXiuRQS2As22t9uRQC_oCWwex_DXTVNqrYwai7B7YMdRNQESsoOApu6zZgfZTmZ9Txwjxo34fC_4dRVMvwSF313LBzQiby6OEb0BT_csqzppNOhTggId4C1GQ8T1iJUJlf5qa-muJInG_d_WmiUlEompoQmeHglAfiS3v2Myn1-Evfss2-JOdZ4kKs3lcpgLCOLDvHr1cr-TZljKyGkksICqjbKM3spMeBR6mtOXB5eQIOR8uLKTi9BnV3VhbcnshXNe5uLKGHsArRaQrGFLTWDmnxEL84zI7P7qcYbQyYbaRNes-rCjR9kbYwc1k66dupqN4Pbw7MmDwcOZn8p3V1ygccL92zOQh_MMZymss1UiKqtfRWiADXTuo-jvNGA83vHmHSVy1cebuB_1P7OZOM9Zo0dOxqaTCd2xdqya6nMIqLrerah18DVJ50V0BqnN6NXR5VkWV3-EmcshTJnNCojWNRnx2B8SUKClHeVDWBFXFeF96BBEnxH4ROaP
BachelorThesis: Update SPONGEdb with subtypes of cancer
SQL, python, javascript
Open
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Co-supvervised externally
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Markus Listmarkus.list@wzw.tum.deStanislas Werfel (TUM)Using AGO-RIP data to predict miRNA target affinity via deep learning or sequence embeddingOpen
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Markus Listmarkus.list@wzw.tum.deRicha Bharti (Pieris Pharmaceuticals)Implementing a predictive diagnostic tools to guide precision treatment using open data from TCGA
R / python + machine learning skills needed
Open
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Markus Listmarkus.list@wzw.tum.de
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