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Links to download the summary statistics generated by GBMI are provided. For the association results, the headers are
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Column nameDescription
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#CHRchromosome
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POS
genome coordinate (hg38)
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REF
reference allele
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ALT
alternative allele
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rsidrs id
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all_meta_AF
frequency of ALT in the meta-analysis
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inv_var_meta_beta
effect size of ALT in the meta-analysis
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inv_var_meta_sebeta
standard error for effect size
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inv_var_meta_p
association p value in the meta-analysis
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inv_var_het_p
heterogeneity (Cochran’s Q test) p value
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direction
direction of effect sizes in all data sets in the meta-analysis
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N_case
number of cases
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N_ctrl
number of controls
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n_bbk
number of biobanks in the meta-analysis (minimum is 2)
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is_strand_flip
flag to indicate whether this variant had a strand flip in any data set
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is_diff_AF_gnomAD
flag to indicate whether this variant failed the AF QC (compared to gnomAD) in any data set
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