VGP collaborative genomes data set 2, 2019 v2
 Share
The version of the browser you are using is no longer supported. Please upgrade to a supported browser.Dismiss

View only
 
ABCDEFGHIJKLMNOPQRSTUVWXYZAA
1
Data setVertebrate lineageSpecies English Name (link to Genome Ark)Species Scientific NameOrderIUCN StatusBioProject IDProject: genome sample and funding coordinator Assembled byVGP Phase
2
1MammalsCanada lynxLynx canadensisCarnivora (Feliformia)Least concernPRJNA533103VGP: Warren JohnsonArang RhieI
3
1PlatypusOrnithorhynchus anatinusMonotremata
Near threatened
PRJNA513296VGP: Guojie ZhangArang RhieI
4
1Pale spear-nosed batPhyllostomus discolorChiroptera (Yangochiroptera)Least concernPRJNA521246VGP & Bat1K: Sonja Vernes, Erich JarvisArang RhieI
5
1Greater horseshoe batRhinolophus ferrumequinumChiroptera (Yinpterochiroptera)Least concernPRJNA526698
VGP & Bat1K: Emma Teeling, Gareth Jones, Gene Myers
Arang RhieI
6
1BirdsAnna's hummingbirdCalypte annaApodiformesLeast concernPRJNA510144VGP & B10K: Erich JarvisArang RhieI
7
1KakapoStrigops habroptilusPsittaciformesCriticalPRJNA510145VGP & B10K: Erich JarvisArang RhieI
8
1Zebra finch (male)Taeniopygia guttataPasseriformes (Oscines)Least concernPRJNA510143VGP & B10K: Erich JarvisArang RhieI
9
1Zebra finch (female)Taeniopygia guttataPasseriformes (Oscines)Least concernPRJNA533810VGP & B10K: Erich JarvisArang RhieIV
10
1Reptile
Goode's thornscrub tortoise
Gopherus evgoodeiTestudinidaeCriticalPRJNA533104VGP: Bob MurphyArang RhieI
11
1AmphibiansTwo-lined caecilianRhinatrema bivittatumApodaLeast concernPRJEB32113VGP: Mark Wilkinson, Richard DurbinShane McCarthyI
12
1FishBlunt-snouted clingfishGouania willdenowiGobiesociformesLeast concernPRJEB30363VGP: Max Wagner, Richard DurbinArang RhieI
13
1Climbing perchAnabas testudineusAnabantiformesData deficientPRJEB30393VGP: Byrappa Venkatesh, Richard DurbinShane McCarthyI
14
1Flier cichlidArchocentrus centrarchusCichliformesData deficientPRJNA533105VGP: Axel Meyer, Gene MyersArang RhieI
15
1Eastern happyAstatotilapia callipteraCichliformesLeast concernPRJNA557691
Sanger VGP: George Turner, Milan Malinsky, Richard Durbin
Shane McCarthy, Milan Malinsky, Dirk Dominik Dolle
III
16
1Tire track eelMastacembelus armatusSynbranchiformesLeast concernPRJEB31554VGP: Byrappa Venkatesh, Richard DurbinShane McCarthyI
17
18
2MammalsShort-beaked echidnaTachyglossus aculeatusMonotremataLeast concernVGP: Guojie ZhangOlivier FedrigoII
19
2bottlenose dolphinTursiops truncatusCetartiodactyla (Cetacea)Least concernPRJNA562249VGP trio: Erich JarvisGiulio Formenti, Brigid MaloneyI
20
2blue whaleBalaenoptera musculusCetartiodactyla (Cetacea)EndangeredPRJNA557693VGP: Yury BukhmanArang RhieII
21
2vaquitaPhocoena sinusCetartiodactyla (Cetacea)CriticalPRJNA560233VGP: Phil MorinChai Fungtammasan, Arang RhieII
22
2
cow (Angus/Braham hybrid)
Bos taurus
Cetartiodactyla (non Cetacea ungulates)
Least concernVGP trio: Tim SmithArang RhieI
23
2Linnaeus's two toed slothCholoepus didactylusPilosa (Sloths)Least concernPRJNA562198
VGP: Camila Mazzoni, Marcela Uliano de Silva, Gene Myers
Marcela Uliano-SilvaI
24
2lesser anteaterTamandua tetradactylaPilosa (Anteaters)Least concernPRJNA562245
VGP: Camila Mazzoni, Marcela Uliano de Silva, Gene Myers
Marcela Uliano-SilvaI
25
2Eurasian otterLutra lutraCarnivora (Caniformia)
Near Threatened
Sanger 25G: Frank Hailer, Daniel MeadShane McCarthy, Olga DudchenkoI
26
2Californian sea lionZalophus californianusCarnivora (Caniformia)Least concernPRJNA561800VGP: Jochen WolfOlivier Fedrigo, Chai FungtammasanII
27
2StoatMustela ermineaCarnivora (Caniformia)Least concernPRJNA562223VGP: Andrew VealeMarcela Uliano-SilvaII
28
2
Common brushtail possum
Trichosurus vulpeculaDiprotodontia (Phalangeriformes)Least concernPRJNA562248VGP: Neil GemmellMaximillian DrillerI
29
2HumanHomo sapiensPrimates (Apes & OW Monkeys)Least concernPRJNA562213VGP trio: Erich JarvisArang RhieI
30
2ChimpanzeePan troglodytesPrimates (Apes & OW Monkeys)EndangeredPrimate VGP: Evan EichlerChai Fungtammasan, Arang RhieI
31
2Common marmosetCallithrix jacchusPrimates (NW Monkeys)Least concernPRJNA560230VGP trio: Guojie Zhang, Erich JarvisArang Rhie, Stephanie MarcusI
32
2Ring-tailed lemurLemur cattaPrimates (Lemurs)EndangeredPRJNA562215VGP: Tomas Marques-BonetBettina Haase, Marcela Uliano-SilvaI
33
2greater mouse-eared batMyotis myotisChiroptera (Yangochiroptera)Least concernBat1K: Emma Teeling, Gene MyersMartin PippelII
34
2Kuhl's pipistrellePipistrellus kuhliiChiroptera (Yangochiroptera)Least concernBat1K: Emma Teeling, Gene MyersMartin PippelII
35
2velvety free-tailed batMolossus MolossusChiroptera (Yangochiroptera)Least concernBat1K: Dina Deichmann, Gene MyersMartin PippelII
36
2Egyptian fruit batRousettus aegyptiacusChiroptera (Yinpterochiroptera)Least concernBat1K: Sonja Vernes, Gene MyersMartin PippelII
37
2Eurasian red squirrelSciurus vulgarisRodentia (Squirrels/Chipmunks)Least concernSanger 25G: Rachel Cripps, Daniel MeadShane McCarthyI
38
2water voleArvicola amphibiusRodentia (Muridae)Least concernSanger 25G: Angus Carpenter, Daniel MeadShane McCarthyI
39
2Nile ratArvicanthis niloticusRodentia (Muridae)Least concernPRJNA562178VGP trio: Yury BukhmanGiulio FormentiII
40
2BirdsMute swanCygnus olorAnseriformesLeast concernPRJNA562205VGP & B10K: Robert KrausOlivier FedrigoIII
41
2Common yellowthroatGeothlypis trichasPasseriformes (Oscines)Least concernVGP: Peter DunnOlivier Fedrigo, Simona SecomandiII
42
2Eurasian blackcapSylvia atricapillaPasseriformes (Oscines)Least concernPRJNA560235VGP: Miriam LiedvogelOlivier Fedrigo, Marcela Uliano-SilvaII
43
2Swainson's thrushCatharus ustulatusPasseriformes (Oscines)Least concernPRJNA562193VGP: Kira DelmoreMajid Vafadar,II
44
2Barn swallowHirundo rusticaPasseriformes (Oscines)Least concernVGP: Giulio FormentiGiulio FormentiII
45
2Garden warblerSylvia borinPasseriformes (Oscines)Least concernPRJNA562244VGP: Steve SmithCalvinna CaswaraIV
46
2New Caledonian crowCorvus moneduloidesPasseriformes (Oscines)Least concernPRJNA561795VGP: Neil GemmellChai FungtammasanII
47
2Lanced-tailed manakinChiroxiphia lanceolataPasseriformes (Suboscines)Least concernPRJNA562196VGP & B10K: Christopher BalakrishnanOlivier FedrigoI
48
2RiflemanAcanthisitta chlorisPasseriformes (Acanthisitti)Least concernPRJNA562166VGP & B10K: Tom Gilbert, Erich JarvisOlivier FedrigoI
49
2Great potooNyctibius grandisCaprimulgiformes (Nyctibiidae)Least concernPRJNA562227VGP & B10K: Tom Gilbert, Erich Jarvis
Tomas Carrasco and Marcela Uliano-Silva,
I
50
2European golden eagleAquila chrysaetosAccipitriformesLeast concernPRJEB33202Sanger 25G & VGP: Rob Ogden, Daniel MeadShane McCarthyI
51
2Tufted duckAythya fuligulaAnseriformesLeast concernPRJNA562180VGP & B10K: Robert KrausOlivier Fedrigo, Marcela Uliano-SilvaI
52
2Abyssinian ground hornbillBucorvus abyssinicusBucerotiformesVulnerablePRJNA562182VGP & B10K: Tom Gilbert, Erich JarvisOlivier Fedrigo, Marcela Uliano-SilvaI
53
2Red-legged seriemaCariama cristata CariaformesLeast concernPRJNA562192VGP & B10K: Tom Gilbert, Erich JarvisOlivier Fedrigo, Marcela Uliano-SilvaI
54
2RazorbillAlca tordaCharadriiformes
Near Threatened
PRJNA557696VGP & B10K: Tom Gilbert, Erich JarvisOlivier Fedrigo, Chai FungtammasanI
55
2Common ternSterna hirundoCharadriiformesLeast concernPRJNA560234VGP: Miriam LiedvogelCalvinna CaswaraII
56
2American flamingoPhoenicopterus ruber ruberPhoenicopteriformesLeast concernPRJNA562231VGP & B10K: Tom Gilbert, Erich JarvisOlivier Fedrigo, Bettina HaaseI
57
2European turtle doveStreptopelia turturColumbiformesVulnerablePRJEB32727Sanger 25G: Jenny Dunn, Daniel MeadShane McCarthyI
58
2Carmine bee-eaterMerops nubicusCoraciiformesLeast concernPRJNA562222VGP & B10K: Tom Gilbert, Erich JarvisCalvinna CaswaraI
59
2
Yellow-throated sandgrouse
Pterocles gutturalisPterocliformesLeast concernPRJNA562241VGP & B10K: Tom Gilbert, Erich JarvisChul LeeI
60
2Red-crested turacoTauraco erythrolophusMusophagiformesLeast concernPRJNA562246VGP & B10K: Tom Gilbert, Erich JarvisGiulio Formenti, Simona SecomandiI
61
2BudgerigarMelopsittacus undulatusPsittaciformesLeast concernPRJNA562220VGP & B10K trio: Erich Jarvis
Olivier Fedrigo, Giulio Formenti, Gregory Gedman
II
62
2Grey crowned-crane
Balearica regulorum gibbericeps
GruiformesEndangeredPRJNA562181VGP & B10K: Tom Gilbert, Erich JarvisGiulio FormentiI
63
2Common cuckooCuculus canorusCuculiformesLeast concernPRJNA562200VGP & B10K: Jochen WolfBettina HaaseI
64
2GyrfalconFalco rusticolusFalconiformesLeast concernPRJNA562209VGP & B10K: Qasim AyubOlivier FedrigoI
65
2Downy woodpeckerDryobates pubescensPiciformesLeast concernPRJNA562232VGP & B10K: Matthew FuxjagerOlivier FedrigoI
66
2ChickenGallus gallusGalliformesLeast concernVGP & B10K trio: Wes Warren, Erich JarvisOlivier FedrigoI
67
2ReptilesLeatherback sea turtleDermochelys coriaceaDermochelyidaeVulnerablePRJNA562206VGP: Lisa KomoroskeOlivier Fedrigo, Marcela Uliano-SilvaI
68
2Sand lizardLacerta agilisLacertoidea (Lacertidae)Least concernPRJNA562214VGP: Neil GemmellOlivier Fedrigo, Bettina HaaseI
69
2
Western terrestrial garter snake
Thamnophis elegansSquamataLeast concernPRJNA562247VGP: Anne BronikowskiOlivier Fedrigo, Chai FungtammasanI
70
2green sea turtleChelonia mydasCheloniidaeEndangeredPRJNA562195VGP: Camila Mazzoni, Gene MyersMartin PippelI
71
2Bolson tortoiseGopherus flavomarginatusTestudinidaeCrticalPRJNA533104VGP trio: Bob MurphySergey Koren, Arang RhieIV
72
2AmphibiansHourglass treefrogDendropsophus ebraccatusNeobatrachiaLeast concernVGP trio: Justin TouchonArang RhieI
73
2Tiny Cayenne caecilianMicrocaecilia unicolorApodaLeast concernPRJEB32739VGP: Mark Wilkinson, Richard DurbinShane McCarthyI
74
2Gaboon caecilianGeotrypetes seraphiniApodaLeast concernPRJEB33993VGP: Mark Wilkinson, Richard DurbinShane McCarthyI
75
2European common frogRana temporariaRanidae (Pyxicephalidae)Least concernDarwin ToL: NHM, Richard DurbinShane McCarthyI
76
2European toadBufo bufoBufonidaeLeast concernDarwin ToL: NHM, Richard DurbinShane McCarthyI
77
2FishChannel bull blennyCottoperca gobioPerciformesData deficientPRJEB30272VGP: Bill Detrich, Richard DurbinShane McCarthyI
78
2Zebrafish SAT strainDanio rerioCypriniformesLeast concernSanger & Dresden trio: Kerstin Howe, Gene MyersArang Rhie, Shane McCarthyI
79
2panther danioDanio aesculapiiCypriniformes
Near Threatened
Sanger VGP: Kerstin HoweShane McCarthyIV
80
2orange-finned danioDanio kyathitCypriniformes
Near Threatened
Sanger VGP: Kerstin HoweShane McCarthyIV
81
2largescale four-eyed fishAnableps anablepsCyprinodontiformesLeast concernPRJNA562167VGP: Axel Meyer, Gene MyersMartin PippelI
82
2warty frogfishAntennarius maculatusLophiiformesData deficientPRJNA562173VGP: Axel Meyer, Gene MyersMartin PippelI
83
2MilkfishChanos chanosGonorynchiformesLeast concernPRJEB33883VGP: Byrappa Venkatesh, Richard DurbinShane McCarthyI
84
2Denticle herringDenticeps clupeoidesClupeiformesVulnerablePRJEB31550VGP: Ralf Britz, Richard DurbinShane McCarthyI
85
2Live sharksuckerEcheneis naucratesCarangiformesLeast concernPRJEB31994VGP: Byrappa Venkatesh, Richard Durbin Shane McCarthyI
86
2ReedfishErpetoichthys calabaricusPolypteriformes
Near Threatened
PRJEB31587VGP: Byrappa Venkatesh, Richard DurbinShane McCarthyI
87
2Atlantic codGadus morhuaGadiformesVulnerablePRJEB33456VGP: Kjetill Jakobsen, Richard DurbinShane McCarthyI
88
2Pinecone soldierfishMyripristis murdjanHolocentriformesLeast concernPRJEB33189VGP: Byrappa Venkatesh, Richard DurbinShane McCarthyI
89
2Indian glassy fishParambassis rangaOvalentariaLeast concernPRJEB30286VGP: Byrappa Venkatesh, Richard DurbinShane McCarthyI
90
2Jewelled blennySalarias fasciatusBlenniiformesLeast concernPRJEB33185VGP: Byrappa Venkatesh, Richard DurbinShane McCarthyI
91
2Brown troutSalmo truttaSalmoniformesLeast concernPRJEB33201
Sanger 25G: Sigbjørn Lien, Richard Durbin, Daniel Mead
Shane McCarthyI
92
2Golden arowanaScleropages formosusOsteoglossiformesEndangeredPRJEB31997VGP: Byrappa Venkatesh, Richard DurbinShane McCarthyI
93
2Gilthead seabreamSparus aurataSpariformesLeast concernPRJEB31904VGP: Byrappa Venkatesh, Richard DurbinShane McCarthyI
94
2Orbiculate cardinalfishSphaeramia orbicularisKurtiformesData deficientPRJEB33178VGP: Byrappa Venkatesh, Richard DurbinShane McCarthyI
95
2Greater pipefishSyngnathus acusSyngnathiformesLeast concernPRJEB32743VGP: Richard Durbin, Martin GennerShane McCarthyI
96
2Japanese puffer (torafugu)Takifugu rubripesTetraodontiformes
Near Threatened
PRJEB31991VGP: Richard Durbin, Byrappa VenkateshShane McCarthyI
97
2Prehistoric monster fishThalassophryne amazonicaBatrachoidiformesData deficientVGP: Ralf Britz, Richard DurbinShane McCarthyI
98
2Atlantic halibutHippoglossus hippoglossusPleuronectiformesEndangeredPRJNA562210VGP: Tony EinfeldtOlivier FedrigoI
99
2
New Zealand spotty wrasse
Notolabrus celidotusPerciformesLeast concernPRJNA562225VGP: Neil Gemmell
Nicholas Hill, Chai Fungtammasan, Arang Rhie
I
100
2SterletAcipenser ruthenusAcipenseriformesVulnerable
VGP trio: Clare Baker & Martin Pšenička, Richard Durbin
Shane McCarthyI
Loading...