VGP collaborative genomes data set 2, 2019 v2

	A	B	C	D	E	F	G	H	I	J
1	Data set	Vertebrate lineage	Species English Name (link to Genome Ark)	Species Scientific Name	Order	IUCN Status	BioProject ID	Project: genome sample and funding coordinator	Assembled by	VGP Phase

2	1	Mammals	Canada lynx	Lynx canadensis	Carnivora (Feliformia)	Least concern	PRJNA533103	VGP: Warren Johnson	Arang Rhie	I
3	1		Platypus	Ornithorhynchus anatinus	Monotremata	Near threatened	PRJNA513296	VGP: Guojie Zhang	Arang Rhie	I
4	1		Pale spear-nosed bat	Phyllostomus discolor	Chiroptera (Yangochiroptera)	Least concern	PRJNA521246	VGP & Bat1K: Sonja Vernes, Erich Jarvis	Arang Rhie	I
5	1		Greater horseshoe bat	Rhinolophus ferrumequinum	Chiroptera (Yinpterochiroptera)	Least concern	PRJNA526698	VGP & Bat1K: Emma Teeling, Gareth Jones, Gene Myers	Arang Rhie	I
6	1	Birds	Anna's hummingbird	Calypte anna	Apodiformes	Least concern	PRJNA510144	VGP & B10K: Erich Jarvis	Arang Rhie	I
7	1		Kakapo	Strigops habroptilus	Psittaciformes	Critical	PRJNA510145	VGP & B10K: Erich Jarvis	Arang Rhie	I
8	1		Zebra finch (male)	Taeniopygia guttata	Passeriformes (Oscines)	Least concern	PRJNA510143	VGP & B10K: Erich Jarvis	Arang Rhie	I
9	1		Zebra finch (female)	Taeniopygia guttata	Passeriformes (Oscines)	Least concern	PRJNA533810	VGP & B10K: Erich Jarvis	Arang Rhie	IV
10	1	Reptile	Goode's thornscrub tortoise	Gopherus evgoodei	Testudinidae	Critical	PRJNA533104	VGP: Bob Murphy	Arang Rhie	I
11	1	Amphibians	Two-lined caecilian	Rhinatrema bivittatum	Apoda	Least concern	PRJEB32113	VGP: Mark Wilkinson, Richard Durbin	Shane McCarthy	I
12	1	Fish	Blunt-snouted clingfish	Gouania willdenowi	Gobiesociformes	Least concern	PRJEB30363	VGP: Max Wagner, Richard Durbin	Arang Rhie	I
13	1		Climbing perch	Anabas testudineus	Anabantiformes	Data deficient	PRJEB30393	VGP: Byrappa Venkatesh, Richard Durbin	Shane McCarthy	I
14	1		Flier cichlid	Archocentrus centrarchus	Cichliformes	Data deficient	PRJNA533105	VGP: Axel Meyer, Gene Myers	Arang Rhie	I
15	1		Eastern happy	Astatotilapia calliptera	Cichliformes	Least concern	PRJNA557691	Sanger VGP: George Turner, Milan Malinsky, Richard Durbin	Shane McCarthy, Milan Malinsky, Dirk Dominik Dolle	III
16	1		Tire track eel	Mastacembelus armatus	Synbranchiformes	Least concern	PRJEB31554	VGP: Byrappa Venkatesh, Richard Durbin	Shane McCarthy	I
17
18	2	Mammals	Short-beaked echidna	Tachyglossus aculeatus	Monotremata	Least concern		VGP: Guojie Zhang	Olivier Fedrigo	II
19	2		bottlenose dolphin	Tursiops truncatus	Cetartiodactyla (Cetacea)	Least concern	PRJNA562249	VGP trio: Erich Jarvis	Giulio Formenti, Brigid Maloney	I
20	2		blue whale	Balaenoptera musculus	Cetartiodactyla (Cetacea)	Endangered	PRJNA557693	VGP: Yury Bukhman	Arang Rhie	II
21	2		vaquita	Phocoena sinus	Cetartiodactyla (Cetacea)	Critical	PRJNA560233	VGP: Phil Morin	Chai Fungtammasan, Arang Rhie	II
22	2		cow (Angus/Braham hybrid)	Bos taurus	Cetartiodactyla (non Cetacea ungulates)	Least concern		VGP trio: Tim Smith	Arang Rhie	I
23	2		Linnaeus's two toed sloth	Choloepus didactylus	Pilosa (Sloths)	Least concern	PRJNA562198	VGP: Camila Mazzoni, Marcela Uliano de Silva, Gene Myers	Marcela Uliano-Silva	I
24	2		lesser anteater	Tamandua tetradactyla	Pilosa (Anteaters)	Least concern	PRJNA562245	VGP: Camila Mazzoni, Marcela Uliano de Silva, Gene Myers	Marcela Uliano-Silva	I
25	2		Eurasian otter	Lutra lutra	Carnivora (Caniformia)	Near Threatened		Sanger 25G: Frank Hailer, Daniel Mead	Shane McCarthy, Olga Dudchenko	I
26	2		Californian sea lion	Zalophus californianus	Carnivora (Caniformia)	Least concern	PRJNA561800	VGP: Jochen Wolf	Olivier Fedrigo, Chai Fungtammasan	II
27	2		Stoat	Mustela erminea	Carnivora (Caniformia)	Least concern	PRJNA562223	VGP: Andrew Veale	Marcela Uliano-Silva	II
28	2		Common brushtail possum	Trichosurus vulpecula	Diprotodontia (Phalangeriformes)	Least concern	PRJNA562248	VGP: Neil Gemmell	Maximillian Driller	I
29	2		Human	Homo sapiens	Primates (Apes & OW Monkeys)	Least concern	PRJNA562213	VGP trio: Erich Jarvis	Arang Rhie	I
30	2		Chimpanzee	Pan troglodytes	Primates (Apes & OW Monkeys)	Endangered		Primate VGP: Evan Eichler	Chai Fungtammasan, Arang Rhie	I
31	2		Common marmoset	Callithrix jacchus	Primates (NW Monkeys)	Least concern	PRJNA560230	VGP trio: Guojie Zhang, Erich Jarvis	Arang Rhie, Stephanie Marcus	I
32	2		Ring-tailed lemur	Lemur catta	Primates (Lemurs)	Endangered	PRJNA562215	VGP: Tomas Marques-Bonet	Bettina Haase, Marcela Uliano-Silva	I
33	2		greater mouse-eared bat	Myotis myotis	Chiroptera (Yangochiroptera)	Least concern		Bat1K: Emma Teeling, Gene Myers	Martin Pippel	II
34	2		Kuhl's pipistrelle	Pipistrellus kuhlii	Chiroptera (Yangochiroptera)	Least concern		Bat1K: Emma Teeling, Gene Myers	Martin Pippel	II
35	2		velvety free-tailed bat	Molossus Molossus	Chiroptera (Yangochiroptera)	Least concern		Bat1K: Dina Deichmann, Gene Myers	Martin Pippel	II
36	2		Egyptian fruit bat	Rousettus aegyptiacus	Chiroptera (Yinpterochiroptera)	Least concern		Bat1K: Sonja Vernes, Gene Myers	Martin Pippel	II
37	2		Eurasian red squirrel	Sciurus vulgaris	Rodentia (Squirrels/Chipmunks)	Least concern	PRJEB35381	Sanger 25G: Rachel Cripps, Daniel Mead	Shane McCarthy	I
38	2		water vole	Arvicola amphibius	Rodentia (Muridae)	Least concern		Sanger 25G: Angus Carpenter, Daniel Mead	Shane McCarthy	I
39	2		Nile rat	Arvicanthis niloticus	Rodentia (Muridae)	Least concern	PRJNA562178	VGP trio: Yury Bukhman	Giulio Formenti	II
40	2	Birds	Mute swan	Cygnus olor	Anseriformes	Least concern	PRJNA562205	VGP & B10K: Robert Kraus	Olivier Fedrigo	III
41	2		Common yellowthroat	Geothlypis trichas	Passeriformes (Oscines)	Least concern	PRJNA562241	VGP: Peter Dunn	Olivier Fedrigo, Simona Secomandi	II
42	2		Eurasian blackcap	Sylvia atricapilla	Passeriformes (Oscines)	Least concern	PRJNA560235	VGP: Miriam Liedvogel	Olivier Fedrigo, Marcela Uliano-Silva	II
43	2		Swainson's thrush	Catharus ustulatus	Passeriformes (Oscines)	Least concern	PRJNA562193	VGP: Kira Delmore	Majid Vafadar,	II
44	2		Barn swallow	Hirundo rustica	Passeriformes (Oscines)	Least concern		VGP: Giulio Formenti	Giulio Formenti	II
45	2		Garden warbler	Sylvia borin	Passeriformes (Oscines)	Least concern	PRJNA562244	VGP: Steve Smith	Calvinna Caswara	IV
46	2		New Caledonian crow	Corvus moneduloides	Passeriformes (Oscines)	Least concern	PRJNA561795	VGP: Neil Gemmell	Chai Fungtammasan	II
47	2		Lanced-tailed manakin	Chiroxiphia lanceolata	Passeriformes (Suboscines)	Least concern	PRJNA562196	VGP & B10K: Christopher Balakrishnan	Olivier Fedrigo	I
48	2		Rifleman	Acanthisitta chloris	Passeriformes (Acanthisitti)	Least concern	PRJNA562166	VGP & B10K: Tom Gilbert, Erich Jarvis	Olivier Fedrigo	I
49	2		Great potoo	Nyctibius grandis	Caprimulgiformes (Nyctibiidae)	Least concern	PRJNA562227	VGP & B10K: Tom Gilbert, Erich Jarvis	Tomas Carrasco and Marcela Uliano-Silva,	I
50	2		European golden eagle	Aquila chrysaetos	Accipitriformes	Least concern	PRJEB33202	Sanger 25G & VGP: Rob Ogden, Daniel Mead	Shane McCarthy	I
51	2		Tufted duck	Aythya fuligula	Anseriformes	Least concern	PRJNA562180	VGP & B10K: Robert Kraus	Olivier Fedrigo, Marcela Uliano-Silva	I
52	2		Abyssinian ground hornbill	Bucorvus abyssinicus	Bucerotiformes	Vulnerable	PRJNA562182	VGP & B10K: Tom Gilbert, Erich Jarvis	Olivier Fedrigo, Marcela Uliano-Silva	I
53	2		Red-legged seriema	Cariama cristata	Cariaformes	Least concern	PRJNA562192	VGP & B10K: Tom Gilbert, Erich Jarvis	Olivier Fedrigo, Marcela Uliano-Silva	I
54	2		Razorbill	Alca torda	Charadriiformes	Near Threatened	PRJNA557696	VGP & B10K: Tom Gilbert, Erich Jarvis	Olivier Fedrigo, Chai Fungtammasan	I
55	2		Common tern	Sterna hirundo	Charadriiformes	Least concern	PRJNA560234	VGP: Miriam Liedvogel	Calvinna Caswara	II
56	2		American flamingo	Phoenicopterus ruber ruber	Phoenicopteriformes	Least concern	PRJNA562231	VGP & B10K: Tom Gilbert, Erich Jarvis	Olivier Fedrigo, Bettina Haase	I
57	2		European turtle dove	Streptopelia turtur	Columbiformes	Vulnerable	PRJEB32727	Sanger 25G: Jenny Dunn, Daniel Mead	Shane McCarthy	I
58	2		Carmine bee-eater	Merops nubicus	Coraciiformes	Least concern	PRJNA562222	VGP & B10K: Tom Gilbert, Erich Jarvis	Calvinna Caswara	I
59	2		Yellow-throated sandgrouse	Pterocles gutturalis	Pterocliformes	Least concern	PRJNA562241	VGP & B10K: Tom Gilbert, Erich Jarvis	Chul Lee	I
60	2		Red-crested turaco	Tauraco erythrolophus	Musophagiformes	Least concern	PRJNA562246	VGP & B10K: Tom Gilbert, Erich Jarvis	Giulio Formenti, Simona Secomandi	I
61	2		Budgerigar	Melopsittacus undulatus	Psittaciformes	Least concern	PRJNA562220	VGP & B10K trio: Erich Jarvis	Olivier Fedrigo, Giulio Formenti, Gregory Gedman	II
62	2		Grey crowned-crane	Balearica regulorum gibbericeps	Gruiformes	Endangered	PRJNA562181	VGP & B10K: Tom Gilbert, Erich Jarvis	Giulio Formenti	I
63	2		Common cuckoo	Cuculus canorus	Cuculiformes	Least concern	PRJNA562200	VGP & B10K: Jochen Wolf	Bettina Haase	I
64	2		Gyrfalcon	Falco rusticolus	Falconiformes	Least concern	PRJNA562209	VGP & B10K: Qasim Ayub	Olivier Fedrigo	I
65	2		Downy woodpecker	Dryobates pubescens	Piciformes	Least concern	PRJNA562232	VGP & B10K: Matthew Fuxjager	Olivier Fedrigo	I
66	2		Chicken	Gallus gallus	Galliformes	Least concern		VGP & B10K trio: Wes Warren, Erich Jarvis	Olivier Fedrigo	I
67	2	Reptiles	Leatherback sea turtle	Dermochelys coriacea	Dermochelyidae	Vulnerable	PRJNA562206	VGP: Lisa Komoroske	Olivier Fedrigo, Marcela Uliano-Silva	I
68	2		Sand lizard	Lacerta agilis	Lacertoidea (Lacertidae)	Least concern	PRJNA562214	VGP: Neil Gemmell	Olivier Fedrigo, Bettina Haase	I
69	2		Western terrestrial garter snake	Thamnophis elegans	Squamata	Least concern	PRJNA562247	VGP: Anne Bronikowski	Olivier Fedrigo, Chai Fungtammasan	I
70	2		green sea turtle	Chelonia mydas	Cheloniidae	Endangered	PRJNA562195	VGP: Camila Mazzoni, Gene Myers	Martin Pippel	I
71	2		Bolson tortoise	Gopherus flavomarginatus	Testudinidae	Crtical	PRJNA533104	VGP trio: Bob Murphy	Sergey Koren, Arang Rhie	IV
72	2	Amphibians	Hourglass treefrog	Dendropsophus ebraccatus	Neobatrachia	Least concern		VGP trio: Justin Touchon	Arang Rhie	I
73	2		Tiny Cayenne caecilian	Microcaecilia unicolor	Apoda	Least concern	PRJEB32739	VGP: Mark Wilkinson, Richard Durbin	Shane McCarthy	I
74	2		Gaboon caecilian	Geotrypetes seraphini	Apoda	Least concern	PRJEB33993	VGP: Mark Wilkinson, Richard Durbin	Shane McCarthy	I
75	2		European common frog	Rana temporaria	Ranidae (Pyxicephalidae)	Least concern		Darwin ToL: NHM, Richard Durbin	Shane McCarthy	I
76	2		European toad	Bufo bufo	Bufonidae	Least concern		Darwin ToL: NHM, Richard Durbin	Shane McCarthy	I
77	2	Fish	Channel bull blenny	Cottoperca gobio	Perciformes	Data deficient	PRJEB30272	VGP: Bill Detrich, Richard Durbin	Shane McCarthy	I
78	2		Zebrafish SAT strain	Danio rerio	Cypriniformes	Least concern		Sanger & Dresden trio: Kerstin Howe, Gene Myers	Arang Rhie, Shane McCarthy	I
79	2		panther danio	Danio aesculapii	Cypriniformes	Near Threatened		Sanger VGP: Kerstin Howe	Shane McCarthy	IV
80	2		orange-finned danio	Danio kyathit	Cypriniformes	Near Threatened		Sanger VGP: Kerstin Howe	Shane McCarthy	IV
81	2		largescale four-eyed fish	Anableps anableps	Cyprinodontiformes	Least concern	PRJNA562167	VGP: Axel Meyer, Gene Myers	Martin Pippel	I
82	2		warty frogfish	Antennarius maculatus	Lophiiformes	Data deficient	PRJNA562173	VGP: Axel Meyer, Gene Myers	Martin Pippel	I
83	2		Milkfish	Chanos chanos	Gonorynchiformes	Least concern	PRJEB33883	VGP: Byrappa Venkatesh, Richard Durbin	Shane McCarthy	I
84	2		Denticle herring	Denticeps clupeoides	Clupeiformes	Vulnerable	PRJEB31550	VGP: Ralf Britz, Richard Durbin	Shane McCarthy	I
85	2		Live sharksucker	Echeneis naucrates	Carangiformes	Least concern	PRJEB31994	VGP: Byrappa Venkatesh, Richard Durbin	Shane McCarthy	I
86	2		Reedfish	Erpetoichthys calabaricus	Polypteriformes	Near Threatened	PRJEB31587	VGP: Byrappa Venkatesh, Richard Durbin	Shane McCarthy	I
87	2		Atlantic cod	Gadus morhua	Gadiformes	Vulnerable	PRJEB33456	VGP: Kjetill Jakobsen, Richard Durbin	Shane McCarthy	I
88	2		Pinecone soldierfish	Myripristis murdjan	Holocentriformes	Least concern	PRJEB33189	VGP: Byrappa Venkatesh, Richard Durbin	Shane McCarthy	I
89	2		Indian glassy fish	Parambassis ranga	Ovalentaria	Least concern	PRJEB30286	VGP: Byrappa Venkatesh, Richard Durbin	Shane McCarthy	I
90	2		Jewelled blenny	Salarias fasciatus	Blenniiformes	Least concern	PRJEB33185	VGP: Byrappa Venkatesh, Richard Durbin	Shane McCarthy	I
91	2		Brown trout	Salmo trutta	Salmoniformes	Least concern	PRJEB33201	Sanger 25G: Sigbjørn Lien, Richard Durbin, Daniel Mead	Shane McCarthy	I
92	2		Golden arowana	Scleropages formosus	Osteoglossiformes	Endangered	PRJEB31997	VGP: Byrappa Venkatesh, Richard Durbin	Shane McCarthy	I
93	2		Gilthead seabream	Sparus aurata	Spariformes	Least concern	PRJEB31904	VGP: Byrappa Venkatesh, Richard Durbin	Shane McCarthy	I
94	2		Orbiculate cardinalfish	Sphaeramia orbicularis	Kurtiformes	Data deficient	PRJEB33178	VGP: Byrappa Venkatesh, Richard Durbin	Shane McCarthy	I
95	2		Greater pipefish	Syngnathus acus	Syngnathiformes	Least concern	PRJEB32743	VGP: Richard Durbin, Martin Genner	Shane McCarthy	I
96	2		Japanese puffer (torafugu)	Takifugu rubripes	Tetraodontiformes	Near Threatened	PRJEB31991	VGP: Richard Durbin, Byrappa Venkatesh	Shane McCarthy	I
97	2		Prehistoric monster fish	Thalassophryne amazonica	Batrachoidiformes	Data deficient		VGP: Ralf Britz, Richard Durbin	Shane McCarthy	I
98	2		Atlantic halibut	Hippoglossus hippoglossus	Pleuronectiformes	Endangered	PRJNA562210	VGP: Tony Einfeldt	Olivier Fedrigo	I
99	2		New Zealand spotty wrasse	Notolabrus celidotus	Perciformes	Least concern	PRJNA562225	VGP: Neil Gemmell	Nicholas Hill, Chai Fungtammasan, Arang Rhie	I
100	2		Sterlet	Acipenser ruthenus	Acipenseriformes	Vulnerable		VGP trio: Clare Baker & Martin Pšenička, Richard Durbin	Shane McCarthy	I