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SupervisorContactGroupAssociated GroupTopic titleCommentsOpen / Taken
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Zakaria/Markuszakaria.louadi@wzw.tum.deMarkus
Construction of a tissue-specific domain-domain / PPI networks from transcriptomics and splicing data.
Method/Database (Python), Based on DIGGER 's join graph (doi.org/10.1093/nar/gkaa768)
Open
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Daviddavid.blumenthal@wzw.tum.deMarkusA meta-algorithm for bi-cluster editing
benchmarking, methods-focused
Open
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Daviddavid.blumenthal@wzw.tum.deMarkusFast C++ implementation of survival module detection
implementation-focused, C++ needed
Open
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Daviddavid.blumenthal@wzw.tum.deMarkusRobust universal single cell matching
improve the robustness of SCIM (if possible): https://doi.org/10.1101/2020.06.11.146845
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Julian/Janjulian.matschinske@wzw.tum.deJanAdopt and implement standard statistical methods for federated ML
method/coding (any language)
Taken
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Juli/Janjulian.spaeth@wzw.tum.deJan
Adopt and implement survival analysis methods for federated ML: Random Survival Forest, Survival SVM, etc.
method/coding (any language)
Taken
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Gihan/Davidgihanna.gaye@wzw.tum.deMarkusWeb-app for drug repurposing based on CMAP
coding, python or java
Open
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Zakariazakaria.louadi@wzw.tum.deMarkusMachine learning annotation of RNA splicing branchpoints
method, python
Open
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Sepideh/Tim/Davidsadegh@wzw.tum.deMarkus
Investigating the relation between disease comorbidity patterns and underlying structure of cellular networks
java/python, applied
Open
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Mhaned/Tim/Janmhaned.oubounyt@wzw.tum.deJansingle‐cell RNA‐seq based pseudotemporal de novo gene network reconstruction
python, applied
Open
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Sepideh/Julian/Janjulian.matschinske@wzw.tum.deJanCoVex 2.0 - Drug repurposing for COVID-19 and beyond
applied, coding python
Taken
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Sepideh/Julian/Janjulian.matschinske@wzw.tum.deJanxVex 2.0 - Drug repurposing for Influenza/Dengue/Zika ...
applied, coding python
Taken
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Sepideh/Daviddavid.blumenthal@wzw.tum.deMarkusDisease module detection based on novel centrality measures
applied, coding in python and/or java
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Sepideh/Jansadegh@wzw.tum.deJanVirtual patients by integrating omics data with disease-/drug-/comorbiditome networks
applied, coding in java
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Olga Z/Juli/Janjulian.spaeth@wzw.tum.deJanPrivacy-preserving / federated network enrichment analysis
applied and/or methods, coding in python and/or java
Taken
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Co-supvervised externally
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Remco Stam/Janremco.stam@tum.deJan, ExBioRemco Stam
Whole genome re-assembly & annotation: Use dovetail data to improve draft assembly of S. chilense
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Remco Stam/Janremco.stam@tum.deJan, ExBioRemco Stam
Linking phenotype to genotype. Analysis of 35 whole genomes from different geographical populations
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Remco Stam/Janremco.stam@tum.deJan, ExBioRemco StamPathogen genomics: Assembly & comparative genomics of Alternaria strains (Nanopore data)
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Remco Stam/Janremco.stam@tum.deJan, ExBioRemco StamComparative genomics of newly identified Fusarium species (identification of virulence factors etc)
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Remco Stam/Janremco.stam@tum.deJan, ExBioRemco Stam
Genotyping & comparative genomics of fungicide resistant Alternaria solani strains from a Europe-wide panel.
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