Next_Gen_Seq_Library_Database
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ABCDEFGHIJKLMNOPQRSTUVWXYZAAABACADAEAFAGAHAIAJAKALAMANAOAPAQARASATAUAVAWAXAYAZBABB
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Library_IDLib_nameSpeciesTissueSample prep typeExperimentStarting RNA (ug)Post-Ribominusnon-ribo yieldDate of RibominusPerson RibominusingPost-PolyA (ug)poly-a yieldDate of PolyAPerson PolyA-ingFragmentation DatePost-Frag RNA(ug)Yield from fragRNA used for cDNA(ug)cDNA (post purification)(ug)cDNA conc. (post size select/purification) (ng)date of final cDNA prepcommentsPlatformQuantity Sequenced (% lane)Order #Data FolderHTGU Sample IDDate SubmittedDate ReceivedOutput ~# readsSRA IDSRA Submission DateSRA Release DateLibrary Location (tube)Data LocationFacility tube labeling TOPFacility tube labeling SIDEHTGU Machine IDResult Notes
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1Vibrio tubiashiautoclaved C.gigasMICROBExpressVtub exposed to C.gigas tissueSam's notebook 20081218; submitted just Vtub+gigas RNAIlluminaRoberts mRNAVibrio (our writing) Lib 1/23/09 DB 7.82ng/uL 200bp
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2Mercenaria mercenariaIlluminaclamclam mRNA Seq libIllumina clam mRNA SEQ 21.3ng/uL 200bp
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3leanLake troutLeanL (our writing)Lean (our writing) mRNA SEQ 200bp Roberts lab 3ng/uL
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4siscowetLake troutSiscowetS (our writing)Siscowets (our writing) mRNA SEQ 200bp Roberts lab 6.24ng/uL
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5yoji1Coho IlluminaYoji-1Roberts mRNA Yojilibrary Illumina 5/12/09 200bp32.6ng/uL
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6yoji2CohoIllumina9WFA FCERoberts mRNAIllumina 9WFAFCE mRNA 6/24/09
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7DH2C. gigasgillRibominus/polyADrayton Harbor103.434.00%9/15/2009Mac0.9427.65%9/21/2009Mac/Sam9/21/20090.331.91%0.0420.15NA10/2/2009interior gel slicesSOLiDDH2http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_DH2.csfastaDH2 (our writing)DH2 (our writing)
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http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_DH2.qual
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8DH3C. gigasgillRibominus/polyADrayton Harbor103.434.00%9/15/2009Mac0.9427.65%9/21/2009Mac/Sam9/21/20090.331.91%0.0420.15NA10/2/2009exterior gel slicesSOLiDDH3http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_DH3.csfastaDH3 (our writing)DH3 (our writing)
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http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_DH3.qual
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9BB3C. gigasgillRibominus/polyABig Beef Creek102.727.00%9/15/2009Mac0.9334.44%9/21/2009Mac/Sam9/21/20090.443.01%0.06NANA10/2/2009SOLiDBB3http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_BB3.csfastaBB3 (our writing)BB3 (our writing)
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http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_BB3.qual
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10RBC 4TroutRBCRibominus/polyAControl8.60.9911.51%9/16/2009Mac0.3333.75%0.09327.83%0.093NA0.0098SOLiDRBC 4RBC 4 (our writing)3.41ng/uL Roberts 10/28
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11RBC 1TroutRBCRibominus/polyAPoly I:C7.21.520.83%9/16/2009Mac0.3624.12%0.133436.87%0.1334NA0.01234SOLiDRBC 1RBC 1 (our writing)Roberts 8.68ng/uL 10/27/09
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12RBC 2TroutRBCRibominusControl8.5650.23222.71%9/16/2009MacNANA0.00180.78%0.0018NA0.03568SOLiDRBC 2RBC 2 (our writing)10/28 Roberts 37.1ng/uL
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13RBC 3TroutRBCRibominusPoly I:C8.40.78249.31%9/16/2009MacNANA0.53167.87%0.177NA0.01078SOLiDRBC 3RBC 3 (our writing)8.47ng/uL Roberts 10/28
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14GEC.gigaslarvaeRibominusExposed0.8#DIV/0!NANA0.30.18SOLiDGE10/7/2009http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_RbbertsLab_GE_F3_QV.qualGE (our writing)GE (our writing)
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http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20091105_RbbertsLab_GE_F3.csfasta
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15GCC.gigaslarvaeRibominusControl2.41.979.17%NANANANANAhttp://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20100107_MD_Roberts_Hao_64A_71A_64B_Roberts_GC_F3_QV.qual
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http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20100107_MD_Roberts_Hao_64A_71A_64B_Roberts_GC_F3.csfasta
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162LHerringliverpolyA (x2)2L HKOD09107.85NANA2.782.58%0.27227.20%0.272NA0.09218Ginger's LabSOLiDNA
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174LHerringliverpolyA (x2)4L HTOG09104.45NANA1.2861.23%0.33833.80%0.338NA0.4012Ginger's LabSOLiDNA
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183LHerringliverpolyA (x2)3L HSITK0954.45NANA2.1323.92%0.167816.78%0.1678NA1.7694Ginger's LabSOLiDNA
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196LHerringliverpolyA (x2)6L HPWS0985.15NANA1.3941.64%0.520452.04%0.5204NA1.0278Ginger's LabSOLiDNA
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20SR01HerringliverpolyA(x2)pool from all locations500NANA5.31.06%NANANANANANAMoGene454NA10/27/200911/19/2009SRX02271904/14/2011
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21SR02Herringgonad/ovarypolyA(x2)pool from all locations90NANA3.263.62%NANANANANANAMoGene454NA10/27/200911/19/2009SRX08204212/11/2017
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221 G/O HPWS09Herringgonad/ovarypolyA(x2)20NANA0.25961.30%NANANANA92.9Ginger's LabSOLiD
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23CTyellow perch?polyA(x2)12NANA0.3462.88%NANANANA638Ginger's LabSOLiD
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24PQyellow perch?polyA(x2)12NANA0.019920.17%NANANANA207.7Ginger's LabSOLiD
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25WByellow perch?polyA(x2)12NANA0.126721.06%NANANANA168.1Ginger's LabSOLiD
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26LeanLake Troutmuscle poolpolyA(x2)20NANA0.15560.78%NANANANA534.9Ginger's LabSOLiD
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27SiscoLake Troutmuscle poolpolyA(x2)20NANA0.06960.35%NANANANA422.9Ginger's LabSOLiD
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28CCblack abaloneDG poolpolyA(x2)45NANA0.982.18%NANANANA137.9Ginger's LabSOLiD
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29CEblack abaloneDG poolpolyA(x2)45NANA0.8781.95%NANANANA230.01Ginger's LabSOLiD
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30SCblack abaloneDG poolpolyA(x2)Abalone Dg Exp130NANA0.571.90%NANANANANASubmitted to HTGU for sequencingSOLiD3/10/2011
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31SEblack abaloneDG poolpolyA(x2)Abalone Dg Exp130NANA0.4621.54%NANANANANASubmitted to HTGU for sequencingSOLiD3/10/2011
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32SB unmeth C.gigasC.gigasgill poolgDNAhttps://img.skitch.com/20111020-p2guuhtqgff481139jikgdyn46.pngNANANANANANANANANANANANANANANASubmitted to HTGU for sequencingSOLiD3/10/2011http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20110412_SB_UNMETH.csfasta
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33http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20110412_SB_UNMETH.qual
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34SB meth C.gigasC.gigasgill poolgDNANANANANANANANANANANANANANANANASubmitted to HTGU for sequencingSOLiD3/10/2011http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20110412_SB_METH.csfasta
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35http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/solid0078_20110412_SB_METH.qual
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36MAMercenaria mercenariagill poolpolyA(x2)NANANANANANANANANANANANANANANASubmitted to HTGU for sequencingSOLiD3/10/2011
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37BXMercenaria mercenariagill poolpolyA(x2)NANANANANANANANANANANANANANANASubmitted to HTGU for sequencingSOLiD3/10/2011
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38Vt RE22Vibrio tubiashii (RE22)gDNANANANANANANANANANANANANANANANASubmitted to HTGU for sequencingSOLiD3/10/2011
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39Vt STRAINVibrio tubiashii (ATCC 19106)gDNANANANANANANANANANANANANANANANASubmitted to HTGU for sequencingSOLiD3/10/2011
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40mRNA1Lake TroutmRNA sent to us by Rick. Submitted to HTGU for sequencingIllumina3/21/20114/11/2011
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41mRNA2Lake TroutmRNA sent to us by Rick. Submitted to HTGU for sequencingIllumina3/21/20114/11/2011
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42mRNA3Lake TroutmRNA sent to us by Rick. Submitted to HTGU for sequencingIllumina3/21/20114/11/2011
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43mRNA4Lake TroutmRNA sent to us by Rick. Submitted to HTGU for sequencingIllumina3/21/20114/11/2011
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44Clam RADMercenaria mercenariaRADSubmitted to HTGU for sequencingIllumina5/13/20115/19/2011
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45P_Ab_AirPinto Abalone?larvae400ppm;PNW genomics40ugSubmitted to HTGU for sequencingIllumina, 36bp, single-end50FCD0DN19/8/201111/21/201150 millNGS Drive (Pro)Illumina HiSeqRun in same lane as 1000ppm sample
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46P_Ab_CO2Pinto Abalone?larvae1000ppm;PNW genomics40ugSubmitted to HTGU for sequencingIllumina, 36bp, single-end50FCD0DN19/8/201111/21/201150 millNGS Drive (Pro)Illumina HiSeqRun in same lane as 400ppm sample.
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47SB MBD meth (bisulfite)C.gigasgill poolgDNA, methylation enriched
Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc
NANANANANANANANANANANANANANANASubmitted to HTGU for library prep, bisulfite conversion and sequencingIllumina, 36bp, single-end100samwhite_10197412/7/20111/25/2012139millionSRX32737310/22/2013http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/filtered_BSseqGill_L003_R1.fastq
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48400O. conchaphilalarvaeNA37NANANANANANANANANANANANANANASubmitted to HTGU for sequencingIllumina, 36bp, single-end100samwhite_1021591/4/20121/25/2012195millionNGS Drive (Pro)Illumina HiSeqRun in lane by itself.
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492000O. conchaphilalarvaeNA37NANANANANANANANANANANANANANASubmitted to HTGU for sequencingIllumina, 36bp, single-end100samwhite_1021591/4/20121/25/2012195millionNGS Drive (Pro)Illumina HiSeqRun in lane by itself.
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50400O. luridalarvae poolpolyA(x2)FriedmanSubmitted to HTGU for sequencingIllumina, 36bp, single-end25samwhite_1039367/9/20128/7/2012Illumina HiSeq
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511000O. luridalarvae poolpolyA(x2)FriedmanSubmitted to HTGU for sequencingIllumina, 36bp, single-end25samwhite_1039367/9/20128/7/2012Illumina HiSeq
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521600O. luridalarvae poolpolyA(x2)FriedmanSubmitted to HTGU for sequencingIllumina, 36bp, single-end25samwhite_1039367/9/20128/7/2012Illumina HiSeq
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532200O. luridalarvae poolpolyA(x2)FriedmanSubmitted to HTGU for sequencingIllumina, 36bp, single-end25samwhite_1039367/9/20128/7/2012Illumina HiSeq
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54QPX DNAQPXQPXDNazol
Development of Genomic Resources for a thraustochytrid Pathogen and Investigation of Temperature Influences on Gene Expression
Submitted to HTGU for sequencingIllumina, 36bp, single-end33samwhite_1039397/11/20127/31/2012SRX19733512/25/2012Illumina HiSeq
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55QPX ATCC 10CQPXQPXpolyA(x2)
Development of Genomic Resources for a thraustochytrid Pathogen and Investigation of Temperature Influences on Gene Expression
Submitted to HTGU for sequencingIllumina, 36bp, single-end33samwhite_1039387/11/20127/31/2012SRX19733212/25/2012Illumina HiSeq
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56QPX ATCC RTQPXQPXpolyA(x2)
Development of Genomic Resources for a thraustochytrid Pathogen and Investigation of Temperature Influences on Gene Expression
Submitted to HTGU for sequencingIllumina, 36bp, single-end33samwhite_1039387/11/20127/31/2012SRX19733212/25/2012Illumina HiSeq
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57WSOblack abaloneDG pooltotal RNAFriedmanSubmitted to HTGU for sequencingIllumina, 36bp, single-end33samwhite_1039447/9/20128/7/2012Illumina HiSeq
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58WS + Pblack abaloneDG pooltotal RNAFriedmanSubmitted to HTGU for sequencingIllumina, 36bp, single-end33samwhite_1039447/9/20128/7/2012Illumina HiSeq
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59NWSblack abaloneDG pooltotal RNAFriedmanSubmitted to HTGU for sequencingIllumina, 36bp, single-end33samwhite_1039447/9/20128/7/2012Illumina HiSeq
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60106A Female MixO. luridagonad poolpolyA(x2)FriedmanSubmitted to HTGU for sequencingIllumina, 72bp, paired-end25samwhite_1040867/18/201212/19/2012Illumina HiSeq
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61106A Male MixO. luridagonad poolpolyA(x2)FriedmanSubmitted to HTGU for sequencingIllumina, 72bp, paired-end25samwhite_1040867/18/201212/19/2012Illumina HiSeq
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62108A Female MixO. luridagonad poolpolyA(x2)FriedmanSubmitted to HTGU for sequencingIllumina, 72bp, paired-end25samwhite_1040867/18/201212/19/2012Illumina HiSeq
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63108A Male MixO. luridagonad poolpolyA(x2)FriedmanSubmitted to HTGU for sequencingIllumina, 72bp, paired-end25samwhite_1040867/18/201212/19/2012Illumina HiSeq
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64400 & 2800C. gigasgill3' targeted with barcodeSecondary Stress (FHL)Samples sent to Eli Meyer for sequencing9/12/201211/1/201212.6 millionhttp://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/ETS_tagseq.zipIllumina HiSeq8 samples run together (barcoded)
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65174.gmC.gigasspermgDNA
Genome-wide profiling of DNA methylation and gene expression in Crassostrea gigas male gametes
N/ASubmitted to HTGU for sequencingIllumina, Whole Methylome, 72bp PEsamwhite_10502910/11/201212/19/2012SRX38622812/16/2013http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/filtered_174gm_A_NoIndex_L006_R1.fastq
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66http://eagle.fish.washington.edu/trilobite/Crassostrea_gigas_HTSdata/filtered_174gm_A_NoIndex_L006_R2.fastq
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67SB_PoolC.gigasgill pooltotal RNA5ugSubmitted to Genomce Sciences for sequencingIllumina, 50bp, paired-end505/14/20137/9/2013
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68174_gmC.gigasgonadtotal RNA
Genome-wide profiling of DNA methylation and gene expression in Crassostrea gigas male gametes
5ugSubmitted to Genomce Sciences for sequencingIllumina, 50bp, paired-end505/14/20137/9/2013SRX39034612/16/2013
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69Pat muscleO. conchaphilamusclegDNAN/ASubmitted to UW PacBio SequencingPacBio 20kb C266/7/20136/20/2013
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70BS CgFC.gigaseggsgDNAN/ASubmitted to HTGU for library prep, bisulfite conversionIllumina, Whole Methylome, 72bp PEsamwhite_108168FCD2CA8, FCC39EM, FCC3ATL, FCC3ATL_028/26/20139/24/2013
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71BS CgLarv T1D3C.gigaslarvaegDNAN/ASubmitted to HTGU for library prep, bisulfite conversionIllumina, Whole Methylome, 72bp PEsamwhite_108168FCD2CA8, FCC39EM8/26/20139/24/2013
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72BS CgLarv T1D5C.gigaslarvaegDNAN/ASubmitted to HTGU for library prep, bisulfite conversionIllumina, Whole Methylome, 72bp PEsamwhite_108168FCD2CA8, FCC39EM8/26/20139/24/2013
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73BS CgLarv T3D3C.gigaslarvaegDNAN/ASubmitted to HTGU for library prep, bisulfite conversionIllumina, Whole Methylome, 72bp PEsamwhite_108168FCD2CA8, FCC39EM8/26/20139/24/2013
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74BS CgLarv T3D5C.gigaslarvaegDNAN/ASubmitted to HTGU for library prep, bisulfite conversionIllumina, Whole Methylome, 72bp PEsamwhite_108168FCD2CA8, FCC39EM8/26/20139/24/2013
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75BS CgM1C.gigasspermgDNAN/ASubmitted to HTGU for library prep, bisulfite conversionIllumina, Whole Methylome, 72bp PEsamwhite_108168FCD2CA8, FCC39EM8/26/20139/24/2013
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76BS CgM3C.gigasspermgDNAN/ASubmitted to HTGU for library prep, bisulfite conversionIllumina, Whole Methylome, 72bp PEsamwhite_108168FCD2CA8, FCC39EM8/26/20139/24/2013
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77Y38-controlC.gigasgDNASubmitted to HTGU for library prep, bisulfite conversionIllumina, Whole Methylome, 36bp PEsamwhite_108656FCC39KL,FCC25MD9/9/2013
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78Y54-mixC.gigasgDNASubmitted to HTGU for library prep, bisulfite conversionIllumina, Whole Methylome, 36bp PEsamwhite_108656FCC39KL,FCC25MD9/9/2013
85
79V_CF26Pycnopodiacoelomycetestotal RNA
Up in Arms: Immune and Nervous System Response to Sea Star Wasting Disease
Submitted to Cornell for sequencingIllumina, 100bp PE103157143291_5903_10009_H94MGADXX_V_CF26_TTAGGC_R2.fastq.gz5/14/20145/28/2014SRP0511047/16/2015
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80V_CF34Pycnopodiacoelomycetestotal RNA
Up in Arms: Immune and Nervous System Response to Sea Star Wasting Disease
Submitted to Cornell for sequencingIllumina, 100bp PE103157143291_5903_10008_H94MGADXX_V_CF34_CGATGT_R1.fastq.gz5/14/20145/28/2014SRP0511047/16/2015
87
81V_CF71Pycnopodiacoelomycetestotal RNA
Up in Arms: Immune and Nervous System Response to Sea Star Wasting Disease
Submitted to Cornell for sequencingIllumina, 100bp PE103157143291_5903_10007_H94MGADXX_V_CF71_ATCACG_R2.fastq.gz5/14/20145/28/2014SRP0511047/16/2015
88
82HK_CF2Pycnopodiacoelomycetestotal RNA
Up in Arms: Immune and Nervous System Response to Sea Star Wasting Disease
Submitted to Cornell for sequencingIllumina, 100bp PE103157143291_5903_10010_H94MGADXX_HK_CF2_TGACCA_R2.fastq.gz5/14/20145/28/2014SRP0511047/16/2015
89
83HK_CF35Pycnopodiacoelomycetestotal RNA
Up in Arms: Immune and Nervous System Response to Sea Star Wasting Disease
Submitted to Cornell for sequencingIllumina, 100bp PE103157143291_5903_10011_H94MGADXX_HK_CF35_ACAGTG_R1.fastq.gz5/14/20145/28/2014SRP0511047/16/2015
90
84HK_CF70Pycnopodiacoelomycetestotal RNA
Up in Arms: Immune and Nervous System Response to Sea Star Wasting Disease
Submitted to Cornell for sequencingIllumina, 100bp PE103157143291_5903_10012_H94MGADXX_HK_CF70_GCCAAT_R1.fastq.gz5/14/20145/28/2014SRP0511047/16/2015
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85OlyRAD-01O. luridalarvaegDNA (RAD)Sumbitted to University of Oregon for sequencingIllumina, 100bp SE203511/17/201412/2/2014
92
862MC.gigastotal RNApre and post heat shockSubmitted to Genewiz for sequencingIllumina HiSeq2500, 100bp SE16.7JG1411211_R111/24/201412/15/201428854396SRP0722513/23/2016
93
874MC.gigastotal RNApre and post heat shockSubmitted to Genewiz for sequencingIllumina HiSeq2500, 100bp SE16.7JG1411211_R111/24/201412/15/201423895224SRP0722513/23/2016
94
886MC.gigastotal RNApre and post heat shockSubmitted to Genewiz for sequencingIllumina HiSeq2500, 100bp SE16.7JG1411211_R111/24/201412/15/201423863125SRP0722513/23/2016
95
892M HSC.gigastotal RNApre and post heat shockSubmitted to Genewiz for sequencingIllumina HiSeq2500, 100bp SE16.7JG1411211_R111/24/201412/15/201422814726SRP0722513/23/2016
96
904M HSC.gigastotal RNApre and post heat shockSubmitted to Genewiz for sequencingIllumina HiSeq2500, 100bp SE16.7JG1411211_R111/24/201412/15/201418787858SRP0722513/23/2016
97
916M HSC.gigastotal RNApre and post heat shockSubmitted to Genewiz for sequencingIllumina HiSeq2500, 100bp SE16.7JG1411211_R111/24/201412/15/201418964588SRP0722513/23/2016
98
922112_ACAGTGC.virginicagillgDNANB3 No oilSumbitted to University of Oregon for sequencingIllumina, 100bp SE211212/22/20142/10/2015
99
932112_GCCAATC.virginicagillgDNANB6 No oilSumbitted to University of Oregon for sequencingIllumina, 100bp SE211212/22/20142/10/2015
100
942112_CAGATCC.virginicagillgDNANB11 No oilSumbitted to University of Oregon for sequencingIllumina, 100bp SE211212/22/20142/10/2015
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