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Thank you for your interest in Open Office Hours hosted by the API User Group (R-based). At the beginning of each session we will host a 5-10 minute demo, followed by an open agenda. We are soliciting ideas for topics to cover at future sessions. If you have a question or topic you would like to bring up, please add it to the list below and plan to attend that session. Sessions are hosted biweekly from 3:30pm - 4:30pm EST via Zoom at https://fsu.zoom.us/j/97729921303.
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(see calendar announcement for more details)
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Links - GitHub pages website for code snippets: bit.ly/bio-spm-data | Office Hours feedback survey: bit.ly/39S8Dof | Working group wiki: bit.ly/idigbio-api-wg
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Office Hour Session 5 - 10 min. demoYour nameYour email and/or twitterWhat is the topic you would like to discuss?Do you have any code written already? If so, are you willing to share it with us in advance?
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April 8, 2020API introductionCat Chapmancchapman@floridamuseum.ufl.eduCounting # records provided to iDigBio via Symbiota portalshttps://gist.github.com/CatChapman/65f212e87cda8e066279b7f1e3724feb
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April 22, 2020R resources Ron C.Resources in R for biodiversity datahttps://biodiversity-specimen-data.github.io/specimen-data-use-case/
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May 13, 2020Data quality flags - geospatialErica Krimmel@ekrimmelIdentify specimen records with suspicious coordinate datahttps://github.com/ekrimmel/idigbio-api-dq-geo
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May 27, 2020Tools for cleaning & sorting recordsShelly Gaynor@ShellyGaynorTools that can be used to clean or sort records2020 - 4:00pm to 5:00pm
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June 10, 2020Please note that we are now cancelling this office hour out of respect for our colleagues who are participating in #strike4blacklives, #shutDownSTEM, and other associated events on the same day, June 10th.
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June 24, 2020Downloading images via the APIErica Krimmel@ekrimmeldemo of downloading media from the APIhttps://biodiversity-specimen-data.github.io/specimen-data-use-case/use-case/download-media-from-specimens.html
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Mason Heberlingdiscussion on functional trait data in iDB/DwC fields
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July 8, 2020How to download all the dataShelly Gaynor@ShellyGaynorhow to use the download API
https://biodiversity-specimen-data.github.io/specimen-data-use-case/Download_API_example
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July 22, 2020ridigbio ID the data provider Erica Krimmel@ekrimmelridigbio ID the data provider
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August 12, 2020ridigbio ID the data provider Erica Krimmel@ekrimmelridigbio ID the data providerhttps://biodiversity-specimen-data.github.io/specimen-data-use-case/use-case/identify-data-contacts.html
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August 26, 2020Intro to Downloading DataShelly Gaynor@ShellyGaynorIntro to Downloading Data via the API
https://github.com/mgaynor1/CURE-FL-Plants/blob/master/demo/02_DownloadingData/DownloadingDataDemo.nb.html
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September 9, 2020Data flags Erica Krimmel@ekrimmelData flags and iDigBio
https://github.com/iDigBio/idigbio-search-api/wiki/Data-Quality-Flags
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How to filter data flags
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September 23, 2020ADBC SUMMIT WEEKRon C.Special session for Summit folks!Will be posted after these office hours
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Erica Krimmel@ekrimmelWhat is an API + example of reviewing data quality flagshttps://biodiversity-specimen-data.github.io/specimen-data-use-case/use-case/search-by-data-quality-flag.html
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October 14, 2020Downloading data from geoboxShelly Gaynor@ShellyGaynorsearching the API via a bounding box
https://biodiversity-specimen-data.github.io/specimen-data-use-case/BoundingBox.html
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October 28, 2020R basics Ron@roncanepagetting started: installing rstudio and other options
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November 11, 2020HolidayPlease note that this is Veterans Day and we will not meet for these office hours.
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December 9, 2020Pick a demoRon, Erica, and Shelly
Pick a demo - we will be posting a poll with all the demos we can give and you are welcome to pick a demo
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