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Note: This is a working project tracking sheet. Updates are made regularly. This spreadsheet includes activities occuring within the TSI only.
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Common nameScientific name
Taxon Group
Project LeadData aimSequencing platform
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Green and golden bell frogLitoria aureaAmphibianAnthony Waddle
Genome size estimation
NovaSeq
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Green and golden bell frogLitoria aureaAmphibianAnthony WaddleReference GenomeHiFi
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Northern corroboree frogPseudophryne pengilleyiAmphibianScott KeoghPopulation geneticsDArT
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Watsons tree frogLitoria watsoniAmphibianLouise DurkinPopulation genomicsDArT
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Howard springs toadletUperoliea daviesaeAmphibianRenee CatulloReference genomeHiFi
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Howard springs toadletUperoliea daviesaeAmphibianRenee CatulloTranscriptomeIllumina
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Stuttering frog
Mixophyes australis (renamed from balbus in 2023)
AmphibianCarolyn HoggReference GenomeHiFi
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Stuttering frog
Mixophyes australis (renamed from balbus in 2023)
AmphibianCarolyn HoggReference GenomeHiC
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Stuttering frog
Mixophyes australis (renamed from balbus in 2023)
AmphibianCarolyn HoggTranscriptomeIllumina
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Kroombit tinker frogTaudactylus pleioneAmphibianCarolyn HoggReference GenomeHiFi
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Kroombit tinker frogTaudactylus pleioneAmphibianCarolyn HoggTranscriptomeIllumina
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Baw baw frogPhiloria frostiAmphibianCarolyn HoggPopulation genomicsddRAD
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Spotted tree frogLitoria spenceriAmphibianCarolyn HoggPopulation genomicsddRAD
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Armoured mist frogLitoria loricaAmphibianCarolyn HoggPopulation genomicsDArT
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Mountain frogPhiloria kundagunganAmphibianCarolyn HoggPopulation genomicsDArT
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Richmond frogPhiloria richmondensisAmphibianCarolyn HoggPopulation genomicsDArT
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Green and golden bell frogLitoria aureaAmphibianAnthony WaddleReference GenomeHiC
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Orange-bellied parrotNeophema chrysogasterBirdCarolyn HoggReference GenomeHiFi
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Orange-bellied parrotNeophema chrysogasterBirdCarolyn HoggTranscriptomeIllumina
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Tasmaninan scrubtitAcanthornis magnaBirdRoss CratesReference GenomeHiFi
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King Island scrubtitAcanthornis magna greenianaBirdRoss CratesTranscriptomeIllumina
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King Island scrubtitAcanthornis magna greenianaBirdRoss CratesPopulation geneticsddRAD
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Forty-spotted pardalotePardalotus quadragintusBirdDejan StojanovicReference GenomeHiFi
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Forty-spotted pardalotePardalotus quadragintusBirdDejan StojanovicTranscriptomeIllumina
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Forty-spotted pardalotePardalotus quadragintusBirdDejan StojanovicPopulation geneticsDArT
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Swift parrotLathamus discolorBirdDejan StojanovicReference GenomeHiFi
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Swift parrotLathamus discolorBirdDejan StojanovicTranscriptomeIllumina
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Swift parrotLathamus discolorBirdDejan StojanovicPopulation geneticsDArT
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Brown thornbillAcanthiza pusillaBirdRoss CratesReference GenomeHiFi
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King Island brown thornbillAcanthiza pusilla archibaldiBirdRoss CratesPopulation geneticsddRAD
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King Island brown thornbillAcanthiza pusilla archibaldiBirdRoss CratesTranscriptomeIllumina
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Capricorn yellow chatEpthianura crocea macgregoriBirdWayne HoustonPopulation genomicsddRAD
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Western ground parrotPezoporus flaviventrisBird
Matyas Liptovszky / Leo Joseph
Reference genomeHiFi
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Western ground parrotPezoporus flaviventrisBird
Matyas Liptovszky / Leo Joseph
TranscriptomeIllumina
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Western ground parrotPezoporus flaviventrisBird
Matyas Liptovszky / Leo Joseph
ResequencingIllumina
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Western ground parrotPezoporus flaviventrisBird
Matyas Liptovszky / Leo Joseph
Population genomicsddRAD
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Western ground parrotPezoporus flaviventrisBird
Matyas Liptovszky / Leo Joseph
SNP multiplexSNP multiplex
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Black-eared minerManorina melatonisBirdKatherine HarrissonReference genomeHiFi
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Hooded plover easternthinornis cucullatusBirdGrainne MaguireReference GenomeHiFi
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Hooded plover easternthinornis cucullatusBirdGrainne MaguireTranscriptomeIllumina
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Hooded plover easternthinornis cucullatusBirdGrainne MaguirePopulation genomicsDArT
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Little penguinEudyptula minorBirdJo DayReference genomeHiFi
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Little penguinEudyptula minorBirdJo DayPopulation genomicsDArT
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Regent honeyeaterAnthochaera phrygiaBirdJo DayReference GenomeHiFi
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Regent honeyeaterAnthochaera phrygiaBirdJo DayTranscriptomeIllumina
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Regent honeyeaterAnthochaera phrygiaBirdJo DayPopulation genomicsddRAD
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Night parrotPezoporus occidentalisBird
Jeremy Austin, Leo Joseph
ResequencingIllumina
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Orange-bellied parrotNeophema chrysogasterBirdCarolyn HoggReference GenomeHiC
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Murray crayfishEuastacus armatusCrustaceanChris AustinReference GenomeHiFi
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Murray crayfishEuastacus armatusCrustaceanChris AustinResequencingIllumina
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Hairy marronCherax tenuimanusCrustaceanKym OttewellReference GenomeHiFi
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Swan galaxiasGalaxias fontanusFishBruce DeaglePopulation geneticsddRAD
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Swan galaxiasGalaxias fontanusFishBruce DeagleReference GenomeHiFi
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Swan galaxiasGalaxias fontanusFishBruce DeagleTranscriptomeIllumina
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Clarence galaxiidGalaxias johnstoniFishChris BurridgePopulation geneticsddRAD
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East Gippland GalaxiasGalaxias aequippinisFishMatthew McGeeReference GenomeHiFi
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McDowall's GalaxiasGalaxias mcdowalliFishMatthew McGeeReference GenomeHiFi
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Galaxias "Yalmy"Galaxias sp. 14 'Yalmy'FishMatthew McGeeReference GenomeHiFi
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Shaw GalaxiasGalaxias gunaikurnaiFishMatthew McGeeReference GenomeHiFi
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Tapered GalaxiasGalaxias lanceolatusFishMatthew McGeeReference GenomeHiFi
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West Gippsland GalaxiasGalaxias longifundusFishMatthew McGeeReference GenomeHiFi
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Maugean SkateZearaja maugeanaFishJayson SemmensReference genomeHiFi
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Maugean SkateZearaja maugeanaFishJayson SemmensTranscriptomeIllumina
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Maugean SkateZearaja maugeanaFishJayson SemmensResequencingIllumina
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Maugean SkateZearaja maugeanaFishJayson SemmensPopulation genomicsDArT
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Pedder Galaxias (TAS)
Galaxias pedderensis and Galaxias brevipinnis
FishChris BurridgePopulation genomicsddRAD
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Stocky GalaxiasGalaxias tantangaraFishSam DavisPopulation genomicsDArT
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Stocky GalaxiasGalaxias tantangaraFishSam DavisReference genomeHiFi
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White’s SeahorseHippocampus whiteiFishMichael StatPopulation genomicsddRAD
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Murray hardyheadCraterocephalus fluviatilisFishLuciano BeheregarayPopulation genomicsddRAD
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Yarra Pygmy PerchNannoperca obscuraFishLuciano BeheregarayReference genomeHiFi
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Yarra Pygmy PerchNannoperca obscuraFishLuciano BeheregarayTranscriptomeIllumina
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Grey Nurse SharkCarcharias taurusFishPierre FeutryReference genomeHiFi
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Western barred bandicootPerameles bougainvilleMammalKate FarquharsonPopulation geneticsddRAD
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Western barred bandicootPerameles bougainvilleMammalKate FarquharsonTranscriptomeIllumina
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Hastings river mousePseudomys oralisMammalKevin RowePopulation geneticsddRAD
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Ghost batMacroderma gigasMammalKym OttewellSNP multiplexSNP multiplex
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Ghost batMacroderma gigasMammalKym OttewellReference GenomeHiFi
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Ghost batMacroderma gigasMammalKym OttewellTranscriptomeIllumina
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Eastern barred bandicootPerameles gunniiMammalAndrew WeeksPopulation geneticsddRAD
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Eastern barred bandicootPerameles gunniiMammalAndrew WeeksTranscriptomeIllumina
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Eastern barred bandicootPerameles gunniiMammalAndrew WeeksReference GenomeHiFi
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Eastern chestnut mousePseudomys gracilicaudatusMammalAdrian ManningPopulation geneticsddRAD
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DibblerParantechinus apicalisMammalSaul CowenResequencingIllumina
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Western ringtail possumPseudocheirus occidentalisMammalSean BuckleyPopulation genomicsDArT
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Greater stick-nest ratLeporillus conditorMammalJennifer PiersonSNP multiplexSNP multiplex
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New Holland mousePseudomys novaehollandiaeMammalCarolyn HoggPopulation genomicsDArT
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Smoky MousePseudomys fumeusMammalCarolyn HoggPopulation genomicsDArT
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DugongDugong dugongMammalCarolyn HoggReference GenomeHiFi
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DugongDugong dugongMammalCarolyn HoggReference GenomeHiC
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DugongDugong dugongMammalCarolyn HoggReference GenomeIllumina
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Hairy nose wombatLasiorhinus krefftiiMammalJeremy AustinReference GenomeHiFi
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Little bent-wing batMiniopterus australisMammalCarolyn HoggPopulation genomicsddRAD
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ChuditchDasyurus geoffroiiMarsupialJenny PiersonPopulation geneticsddRAD
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Squirrel gliderPetaurus norfolcensisMarsupialVeronica GroatReference GenomeHiFi
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Squirrel gliderPetaurus norfolcensisMarsupialVeronica GroatPopulation geneticsddRAD
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Julia creek DunnartSminthopsis douglasiMarsupialPeter PrentisPopulation genomicsddRAD
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Brush-tailed rock-wallabyPetrogale penicillataMarsupialCarolyn HoggPopulation genomicsDArT