SBML Level 3 Packages
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LabelNameDescriptionSpecification statusLink to specification information pageLink to current specificationVersion/date of linked specificationErrata for current specificationSoftware implementation statusProgress towards finalizationProposal statusLink to proposal information pageLink to current proposalVersion/date of linked proposalIs proposal up to date with Level 3?Proposal voting results pageLibSBML extension: overall statusLibSBML extension: conversion to Level 2LibSBML extension: location of distributionJSBML extension: overall statusJSBML extension: location of distributionJSBML extension: location of source directoryRNG schema: overall statusLink to RNG schemaPWG namePWG linkSBML Editor acting as liasonLast Checked
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annotAnnotationsSupport for richer annotation syntax than the regular annotations in SBML Level 3 CoreRetired (no more work is planned)http://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Annotations_%28annot%29Not yet availableNot yet availableNoneNo applications are known to support this yetAwaiting release of a draft specification documentProposal approvedhttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Annotationshttp://precedings.nature.com/documents/5610/version/1February 2011Yeshttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Surveys/Level_3_Package_Proposal_Voting_Results:_Qual%2C_FBC%2C_Annot_and_DynImplementation work has not yet startedNo conversion implemented at this timeNot yet availableImplementation work has not yet startedNot yet availableNot yet availableNo schema is available at this timeNot yet availablesbml-annothttps://lists.sourceforge.net/lists/listinfo/sbml-annotNicolas Le Novère2012-12-21
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arraysArraysSupport for expressing arrays of thingsDraft specification and/or implementations are in developmenthttp://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Arrays_and_Sets_%28arrays%29https://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/sbml-level-3/version-1/arrays/spec/sbml-arrays-r0.3a.pdf24 September 2015NoneImplementations are known to be in developmentVerifying the provisional or draft specification through software implementationsProposal approvedhttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Arrays_and_Setshttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Arrays_and_Sets2003-2004Nohttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Surveys/Level_3_Package_Proposal_Voting_Results:_arraysA prototype or test implementation is availableNo conversion implemented at this timehttp://sourceforge.net/projects/sbml/files/libsbml/5.17.0/experimentalA prototype or test implementation is availablehttp://sourceforge.net/p/jsbml/code/HEAD/tree/trunk/extensions/arrays/Not yet availableA prototype or test schema is availablehttps://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/RelaxNG/sbml-arrays/sbml-arrayshttps://lists.sourceforge.net/lists/listinfo/sbml-arraysChris Myers2015-09-24
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compHierarchical Model CompositionA means for defining how a model is composed from other modelsFinal specification approved and two independent implementations are availablehttp://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Hierarchical_Model_Composition_%28comp%29http://identifiers.org/combine.specifications/sbml.level-3.version-1.comp.version-1.release-314 November 2013http://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Hierarchical_Model_Composition_%28comp%29/Confirmed_issues_in_the_Hierarchical_Model_Composition_package_specification#Release_3Two or more implementations have been releasedSpecification has been released and is in maintenance modeProposal approvedhttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Hierarchical_Model_Compositionhttp://sbml.svn.sourceforge.net/viewvc/sbml/trunk/specifications/sbml-level-3/version-1/comp/proposal/Hierarchical%20Model%20Composition%20Proposal.pdf?revision=1432818 May 2011Yeshttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Surveys/Level_3_Package_Proposal_Voting_Results:_compA full (with respect to the specification) implementation is availableNo conversion implemented at this timehttp://sourceforge.net/projects/sbml/files/libsbml/5.17.0/stable/A full (with respect to the specification) implementation is availablehttp://sourceforge.net/projects/jsbml/files/jsbml/1.0-beta1/http://sourceforge.net/p/jsbml/code/HEAD/tree/trunk/extensions/comp/A final schema is availablehttps://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/RelaxNG/sbml-compsbml-comphttps://lists.sourceforge.net/lists/listinfo/sbml-compLucian Smith2016-04-14
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distribDistributionsSupport for encoding models that sample values from statistical distributionsDraft specification and/or implementations are in developmenthttp://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Distributions_%28distrib%29http://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/sbml-level-3/version-1/distrib/sbml-level-3-distrib-package-proposal.pdf?format=rawJune 2018NoneImplementations are known to be in developmentVerifying the provisional or draft specification through software implementationsProposal approvedhttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Distributionshttp://sbml.svn.sourceforge.net/viewvc/sbml/tags/distrib_proposal_0.7_060812/sbml-level-3-distrib-package-proposal.pdf?revision=161836 August 2012YesNot yet availableA prototype or test implementation is availableNo conversion implemented at this timehttp://sourceforge.net/projects/sbml/files/libsbml/5.17.0/experimentalImplementation work has not yet startedNot yet availableNot yet availableA prototype or test schema is availablehttps://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/RelaxNG/sbml-distrib/sbml-distribhttps://lists.sourceforge.net/lists/listinfo/sbml-distribNicolas Le Novère2015-03-06
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dynDynamic StructuresSupport for creating and destroying entities during a simulationDraft specification and/or implementations are in developmenthttp://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Dynamic_Structures_%28dyn%29http://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/sbml-level-3/version-1/dyn/spec/sbml-dyn-v1-rel0.1.pdf?format=raw1 October 2014NoneNo applications are known to support this yetVerifying the provisional or draft specification through software implementationsNeed identified and an approach has been proposedhttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Dynamic_StructuresNot yet availableNot yet availableNohttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Surveys/Level_3_Package_Proposal_Voting_Results:_Qual%2C_FBC%2C_Annot_and_DynA prototype or test implementation is availableNo conversion implemented at this timehttp://sourceforge.net/projects/sbml/files/libsbml/5.17.0/experimentalImplementation work has not yet startedNot yet availableNot yet availableA prototype or test schema is availablehttps://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/RelaxNG/sbml-dyn/sbml-dynamichttps://lists.sourceforge.net/lists/listinfo/sbml-dynamicChris Myers2014-10-03
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fbcFlux Balance ConstraintsSupport for constraint-based (a.k.a. steady-state) modelsFinal specification approved and two independent implementations are availablehttp://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Flux_Balance_Constraints_%28flux%29http://identifiers.org/combine.specifications/sbml.level-3.version-1.fbc.version-2.release-112 Sept 2015NoneTwo or more implementations have been releasedSpecification has been released and is in maintenance modeProposal approvedhttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Flux_Constraintshttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Flux_Balance_Constraints_Proposal_(2012)15 July 2012Yeshttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Surveys/Level_3_Package_Proposal_Voting_Results:_Qual%2C_FBC%2C_Annot_and_DynA full (with respect to the specification) implementation is availableConversion to annotations implementedhttp://sourceforge.net/projects/sbml/files/libsbml/5.17.0/stable/A full (with respect to the specification) implementation is availablehttp://sourceforge.net/projects/jsbml/files/jsbml/1.0-beta1/http://sourceforge.net/p/jsbml/code/HEAD/tree/trunk/extensions/fbc/A final schema is availablehttps://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/RelaxNG/sbml-fbc/sbml-fluxhttps://lists.sourceforge.net/lists/listinfo/sbml-fluxFrank Bergmann2015-09-12
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groupsGroupsA means for grouping elementsFinal specification approved and two independent implementations are availablehttp://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Groups_%28groups%29http://identifiers.org/combine.specifications/sbml.level-3.version-1.groups.version-1.release-101 April 2016NoneTwo or more implementations have been releasedSpecification has been released and is in maintenance modeProposal approvedhttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Groupshttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Groups_Proposal_Updated_%282012-06%2928 June 2012Yeshttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Surveys/Level_3_Package_Proposal_Voting_Results:_groupsA full (with respect to the specification) implementation is availableNo conversion implemented at this timehttp://sourceforge.net/projects/sbml/files/libsbml/5.17.0/stable/A prototype or test implementation is availablehttp://sourceforge.net/projects/jsbml/files/jsbml/1.0-beta1/http://sourceforge.net/p/jsbml/code/HEAD/tree/trunk/extensions/groups/A prototype or test schema is availablehttps://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/RelaxNG/sbml-groups/sbml-groupshttps://lists.sourceforge.net/lists/listinfo/sbml-groupsMichael Hucka2016-04-14
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layoutLayoutSupport for storing the spatial topology of a network diagram; adjunct to the render packageFinal specification approved and two independent implementations are availablehttp://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Layout_%28layout%29http://identifiers.org/combine.specifications/sbml.level-3.version-1.layout.version-1.release-113th August 2013NoneTwo or more implementations have been releasedSpecification has been released and is in maintenance modeProposal approvedhttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Layouthttp://otto.bioquant.uni-heidelberg.de/sbml/25 May 2011Nohttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Surveys/Level_3_Package_Proposal_Voting_Results:_layout_and_rendering#Rendering_Package_ProposalA full (with respect to the specification) implementation is availableConversion to annotations implementedhttp://sourceforge.net/projects/sbml/files/libsbml/5.17.0/stable/A full (with respect to the specification) implementation is availablehttp://sourceforge.net/projects/jsbml/files/jsbml/1.0-beta1/http://sourceforge.net/p/jsbml/code/HEAD/tree/trunk/extensions/layout/A final schema is availablehttps://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/RelaxNG/sbml-layout/sbml-layouthttps://lists.sourceforge.net/lists/listinfo/sbml-layoutFrank Bergmann2016-04-14
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mathExtended MathMLA suite of packages that collectively allow MathML beyond the subset allowed in SBML coreSpecification work has not startedhttp://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Extended_MathML%28math%29Not yet availableNot yet availableNoneNo applications are known to support this yetAwaiting release of a draft specification documentProposal approvedhttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Math_packageshttp://sbml.org/images/e/ed/Proposal_multiple_small_additional_math_packages.pdf8 April 2015Yeshttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Math_packagesImplementation work has not yet startedNo conversion implemented at this timeImplementation work has not yet startedNot yet availableNot yet availableNo schema is available at this timeNot yet availablesbml-mathhttps://lists.sourceforge.net/lists/listinfo/sbml-mathSarah Keating2016-04-15
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multiMultistate and Multicomponent SpeciesObject structures for representing entity pools with multiple states and composed of multiple components, and reaction rules involving themFinal specification approved and two independent implementations are availablehttp://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Multistate_and_Multicomponent_Species_%28multi%29http://identifiers.org/combine.specifications/sbml.level-3.version-1.multi.version-1.release-118 March 2017NoneTwo or more implementations have been releasedSpecification has been released and is in maintenance modeProposal approvedhttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Multistate_and_Multicomponent_Specieshttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Multistate_and_Multicomponent_Species14 April 2010Yeshttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Surveys/Level_3_Package_Proposal_Voting_Results:_multiA full (with respect to the specification) implementation is availableNo conversion implemented at this timehttp://sourceforge.net/projects/sbml/files/libsbml/5.17.0/stableA full (with respect to the specification) implementation is availablehttps://github.com/sbmlteam/jsbml/releases/tag/jsbml-1.2/https://github.com/sbmlteam/jsbml/releases/tag/jsbml-1.2/A final schema is availablehttps://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/RelaxNG/sbml-multi/sbml-multihttps://lists.sourceforge.net/lists/listinfo/sbml-multiFengkai Zhang2017-03-18
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qualQualitative ModelsSupport for models wherein species do not represent quantity of matter & processes are not reactions per seFinal specification approved and two independent implementations are availablehttp://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Qualitative_Models_%28qual%29http://identifiers.org/combine.specifications/sbml.level-3.version-1.qual.version-1.release-117 May 2013NoneTwo or more implementations have been releasedSpecification has been released and is in maintenance modeProposal approvedhttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Qualitative_Modelshttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Qualitative_Models5 November 2011Yeshttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Surveys/Level_3_Package_Proposal_Voting_Results:_Qual%2C_FBC%2C_Annot_and_DynA full (with respect to the specification) implementation is availableNo conversion implemented at this timehttp://sourceforge.net/projects/sbml/files/libsbml/5.17.0/stable/A full (with respect to the specification) implementation is availablehttp://sourceforge.net/projects/jsbml/files/jsbml/1.0-beta1/http://sourceforge.net/p/jsbml/code/HEAD/tree/trunk/extensions/qual/A final schema is availablehttps://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/RelaxNG/sbml-qual/sbml-qualhttps://lists.sourceforge.net/lists/listinfo/sbml-qualClaudine Chaouyia2014-04-10
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renderRenderingSupport for defining the graphical symbols and glyphs used in a diagram of the model; adjunct to the layout packageFinal specification approved and two independent implementations are availablehttp://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Rendering_%28render%29http://identifiers.org/combine.specifications/sbml.level-3.version-1.render.version-1.release-121 Nov 2017NoneTwo or more implementations have been releasedSpecification has been released and is in maintenance modeProposal approvedhttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Renderinghttp://otto.bioquant.uni-heidelberg.de/sbml/level2/20110525/sbml-render-specification-20110525.pdf25 May 2011Nohttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Surveys/Level_3_Package_Proposal_Voting_Results:_layout_and_rendering#Rendering_Package_ProposalA full (with respect to the specification) implementation is availableConversion to annotations implementedhttp://sourceforge.net/projects/sbml/files/libsbml/5.17.0/stableA prototype or test implementation is availablehttp://sourceforge.net/projects/jsbml/files/jsbml/1.0-beta1/http://sourceforge.net/p/jsbml/code/HEAD/tree/trunk/extensions/render/A prototype or test schema is availablehttps://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/RelaxNG/sbml-render/sbml-renderhttps://lists.sourceforge.net/lists/listinfo/sbml-renderFrank Bergmann2017-11-21
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reqRequired ElementsSupport for fine-grained indication of SBML elements that have been changed by the presence of another packageRetired (no more work is planned)http://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Required_Elements_%28req%29https://docs.google.com/file/d/0B71r5kLs3FliWGxFN3o0dnNrZE0/edit30 May 2013NoneNo applications are known to support this yetVerifying the provisional or draft specification through software implementationsProposal approvedhttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Required_Elementshttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Required_Elements_Proposal8 August 2011Yeshttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Surveys/Level_3_Package_Proposal_Voting_Results:_reqA prototype or test implementation is availableNo conversion implemented at this timehttp://sourceforge.net/projects/sbml/files/libsbml/5.17.0/experimentalA prototype or test implementation is availablehttp://sourceforge.net/projects/jsbml/files/jsbml/1.0-beta1/http://sourceforge.net/p/jsbml/code/HEAD/tree/trunk/extensions/req/A prototype or test schema is availablehttps://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/RelaxNG/sbml-req/sbml-requiredhttps://lists.sourceforge.net/lists/listinfo/sbml-requiredLucian Smith2014-04-10
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spatialSpatial ProcessesSupport for describing processes that involve a spatial component, and describing the geometries involvedDraft specification and/or implementations are in developmenthttp://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Spatial_Processes_%28spatial%29http://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/sbml-level-3/version-1/spatial/specification/spatial-v1-sbml-l3v1-rel0.90.pdfApril 2015NoneImplementations are known to be in developmentVerifying the provisional or draft specification through software implementationsProposal approvedhttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Spatial_Geometries_and_Spatial_Processeshttp://sbml.org/images/1/15/SBMLSpatialProposal_2011_04_20.pdf20 April 2011Yeshttp://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Surveys/Level_3_Package_Proposal_Voting_Results:_spatialA prototype or test implementation is availableNo conversion implemented at this timehttp://sourceforge.net/projects/sbml/files/libsbml/5.17.0/experimentalA prototype or test implementation is availablehttp://sourceforge.net/projects/jsbml/files/jsbml/1.0-beta1/http://sourceforge.net/p/jsbml/code/HEAD/tree/trunk/extensions/spatial/A prototype or test schema is availablehttps://sourceforge.net/p/sbml/code/HEAD/tree/trunk/specifications/RelaxNG/sbml-spatial/sbml-spatialhttps://lists.sourceforge.net/lists/listinfo/sbml-spatialJames Schaff2014-09-12
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For more information about SBML Level 3, please visit http://sbml.org/Documents/Specifications
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