ABCDEFGHIJKLMNOPQRSTUVWXYZAAABACAD
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CD45 (all immune cells)
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Cell Type
Cell Surface (Protein) Markers
Gene Markers
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T CellsCD3+[CD3D]CD3+[CD3D]Common
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B CellsCD19 +[Cd19]CD19 +[Cd19]CD44 [Cd44]*= secreted
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MacrophagesF4/80^high[Adgre1] F4/80^high[Adgre1] CD62L [Sell]
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Dentritic Cells
CD11c+[ITGAX] MHCII+[H2-Ab]
CD11c+[ITGAX] MHCII+[H2-Ab]IL7Ra[Il7r]
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Monocytes
CD14+ [Cd14] CD11b+[Itgam] Ly-6C+ [Ly6c](F4/80-[Adgre1] )
CD14+ [Cd14] CD11b+[Itgam] Ly-6C+ [Ly6c](F4/80-[Adgre1] ) CD33
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NK Cells
NK1.1+[Klrb1c] NKp46+[Ncr1] CD314+[Klrk1] (CD3-[CD3D])
NK1.1+[Klrb1c] NKp46+[Ncr1] CD314+[Klrk1] (CD3-[CD3D])
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Platelets
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Red Blood Cells
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CD3 (T cells)
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CD8 T CellsCell Surface (Protein) MarkersGene Markers
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Naïve CD8CD62L+[Sell] CD127+[Il7r] CD197+[Ccr7] CD183+[Cxcr3]Cnr2+[Cnr2](CD44-[Cd44])
p19+[Nsg2] Slfn5+[Slfn5]...CD62L+[Sell] CD127+[Il7r] CD197+[Ccr7] CD183+[Cxcr3]Cnr2+[Cnr2](CD44-[Cd44])
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Central Memory CD8CD127+[Il7r] CD44+[Cd44] CD62L+[Sell] CD197+[Ccr7]
TBR-2+[Eomes] TCF-1[Tcf7] BCl-6+[Bcl6] STAT3+[Stat3] ID-3+[Id3]...CD127+[Il7r] CD44+[Cd44] CD62L+[Sell] CD197+[Ccr7]
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Effector Memory CD8KLRG1+[Klrg1]CD127+[Il7r] CD44+[Cd44]CD95+[Faslg](CD62L-[Sell] CD197-[Ccr7])
CD57+[B3gat1] T-bet+[Tbx21] Blimp-1+[Prdm1] ID-2+[Id2] STAT4+[Stat4]... KLRG1+[Klrg1]CD127+[Il7r] CD44+[Cd44]CD95+[Faslg](CD62L-[Sell] CD197-[Ccr7])
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Effector CD8
CD44+[Cd44] KLRG1+[Klrg1] CD25+[Il2ra] CD69+[Cd69] CD122+[Il2rb] CD134+[Tnfrsf4] LAG-3+[Lag3] CD278+[Icos](CD62L-[Sell] CD197-[Ccr7] CD127-[Il7r])
...CD44+[Cd44] KLRG1+[Klrg1] CD25+[Il2ra] CD69+[Cd69] CD122+[Il2rb] CD134+[Tnfrsf4] LAG-3+[Lag3] CD278+[Icos](CD62L-[Sell] CD197-[Ccr7] CD127-[Il7r])
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Cytotoxic Perforin+[Prf] CD107a+ [Lamp1] CD178+ [Faslg] CD253 +[Tnfsf10] TNF-alpha+[Adam17]
Granzyme+[Gzma] IFN-gamma+[Ifng]*... Perforin+[Prf] CD107a+ [Lamp1] CD178+ [Faslg] CD253 +[Tnfsf10] TNF-alpha+[Adam17]
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Turure-----s-ActivatedCD69+[Cd69] CD25+[Il2ra] ...CD69+[Cd69] CD25+[Il2ra]
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Progenitor ExhaustedCD279+[Pdcd1] CD366+[Havcr2]TCF1/TCF7+[Tcf7]... CD279+[Pdcd1] CD366+[Havcr2]
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Terminally Exhausted CD279+[Pdcd1] TIGIT+[Tigit] TOX+[Tox]...CD279+[Pdcd1] TIGIT+[Tigit]
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CD4 T CellsCell Surface (Protein) MarkersGene Markers
References
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Naïve CD4
CD62L [Sell] CD197+[Ccr7] Ifngr2+[Ifngr2] CD217+[Il17ra] CD360+[Il21r] CD262+[Tnfrsf10b] CD120a+[Tnfrsf1a] (CD44-[Cd44])
CREBBP+[Crebbp] FOXP1+[Foxp1] POU6F1+[Pou6f1] Stat5(?)... CD62L [Sell] CD197+[Ccr7] Ifngr2+[Ifngr2] CD217+[Il17ra] CD360+[Il21r] CD262+[Tnfrsf10b] CD120a+[Tnfrsf1a] (CD44-[Cd44])
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Central Memory CD4CD127+[Il7r] CD44+[Cd44] CD62L+[Sell] CD197+[Ccr7] CD95+[Faslg]...CD127+[Il7r] CD44+[Cd44] CD62L+[Sell] CD197+[Ccr7] ...CD95+[Faslg]
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Effector Memory CD4CD127+[Il7r] CD44+[Cd44] (CD62L-[Sell]) CD95+[Faslg]...CD127+[Il7r] CD44+[Cd44] (CD62L-[Sell]) CD95+[Faslg]
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Scurfin+[Foxp3] IKZF2+[Ikzf2] fosB+[Fosb] HES-1+[Hes1] SOCS-5+[Socs5] C7+[Cxcr10]*Traf2[TRAF2]... CD25+[Il2ra] CD304+[Nrp1] CD215+[Il15ra] CD129+[Il9r] IRAK-2+[Irak2] CD112+[Pvrl2] CD265+[Tnfrsf11a]
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TH1
CD183+[Cxcr3] CD186+[Cxcr6] IL-12RB2+[Ilbr2] CD218a+[Il18r1]
TNF-a+[Tnf] CSF-1+[Csf1] CD119+[Ifngr1], CD218a+[Il18r1] CD218b+[Il18rap], NKG2B+[Klrc1], IL-12RB2+[Il12rb2]
T-bet[Tbx21] IFN-gamma+[Ifng]*IL‑2+[Il2]* Etv5+[Etv5] mOB1+[Hopx] OC-2+[Onecut2] IFN-gamma+[fng]* IL-34+[il34]* ...CD183+[Cxcr3] CD186+[Cxcr6] IL-12RB2+[Ilbr2] CD218a+[Il18r1]
TNF-a+[Tnf] CSF-1+[Csf1] CD119+[Ifngr1], CD218a+[Il18r1] CD218b+[Il18rap], NKG2B+[Klrc1], IL-12RB2+[Il12rb2] CD183+[Cxcr3] CD186+[Cxcr6]
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TH2CD194+[Ccr4] (CD196-[CCR6]) CD4+[Cd4] CD257+[ Tnfsf13b] FcRn+[Fcgrt]
GATA-3+[Gata3] B-ATF+[Batf] NFIL3+[Nfil3] EPAS-1+[Epas1] IL-4+[Il4]* IL‑5+[Il5]* IL‑6+[Il6]*IL‑13+[Il13]... CD4+[Cd4] CD257+[ Tnfsf13b] FcRn+[Fcgrt] CD194+[Ccr4] (CD196-[CCR6])
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TH17
CD196+[Ccr6] CD25+[Il2ra] CD71+[Tfrc] CD267+[tnfrsf13b] TRAF6+[Traf6] (CD8a-[Cd8a]) CD194+[Ccr4]
RORyt+[Rorc] IL-17+[Il17a]* AhR+[Ahr] IL-17F+[Il17f]* IL-21+[Il21]* IRF-4+[Irf4] RZR-alpha+[Rora] PLAGL2+[Plagl2] PAX6+[Pax6] CYPXIA1+[Cyp11a1] IL‑21+[Il21}* IL‑22+[Il22]* AtNFXL1+[NLFX1] INHBA+[Inhba]* IL-2+[Il2]* PlGF+[Pgf]* CD315+[Ptgfrn]... CD196+[Ccr6] CD25+[Il2ra] CD71+[Tfrc] CD267+[tnfrsf13b] TRAF6+[Traf6] (CD8a-[Cd8a]) CD194+[Ccr4]
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TH9CD196+[Ccr6] (CD194-[Ccr4])Pu.1+[Spi1] IL-9+[Il9]* IL-10+[il10]*... CD196+[Ccr6] (CD194-[Ccr4])
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Tfh CD185+[Cxcr5] Bcl-6+[Bcl6] IL-21+[Il21]* IL-10+[il10]*IL-6+[il6]* IL-12+[il12]*... CD185+[Cxcr5]
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Th22CD194+[Ccr4] CD196+[Ccr6] CCR-10+[Ccr10]
AhR+[Ahr] IL-22+[Il22]* IL-21+[Il21]* IL-10+[il10]* IL-6+[il6]* IL-12+[il12]*...CD194+[Ccr4] CD196+[Ccr6] CCR-10+[Ccr10]
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***for all cell types, try to put the protein name first then the gene name in brackets [] = example -> CD127 [IL7R]
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