A | B | C | D | E | F | G | |
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1 | Week | DofW | Month | Day | Lecture | Lecture PDFs | Topic/Title |
2 | 1 | Mon | March | 29 | Sara Mostafavi (UW) | Lecture 1 PDF | Intro to course |
3 | 1 | Wed | March | 31 | Sara Mostafavi (UW) | Lecture 2 PDF | Machine learning for regulatory genomics |
4 | 2 | Mon | April | 5 | Sara Mostafavi (UW) | Lecture 3 PDF | Confounding problems in genomics studies of disease |
5 | 2 | Wed | April | 7 | Casey Greene (UC) | "Machine learning approaches to enhance research and equity in computational biology" | |
6 | 3 | Mon | April | 12 | James Johnson, Ben Jones | Biophysical prediction of protein-peptide interactions and signaling networks using machine learning | |
7 | 3 | Wed | April | 14 | Mohammed AlQuraishi (Columbia) | "Machine-learned molecular models for protein interactions and logic" | |
8 | 4 | Mon | April | 19 | Zorian Thornton, Alyssa La Fleur, Dhruv Yadav | Conditioning by adaptive sampling for robust design | |
9 | 4 | Wed | April | 21 | Jennifer Listgarten (Berkeley) | "Machine learning-based design of proteins (and small molecules and beyond)" | |
10 | 5 | Mon | April | 26 | Ben Jones, Ashley Stephenson, Sophia Jannetty | Integrating spatial gene expression and breast tumour morphology via deep learning | |
11 | 5 | Wed | April | 28 | James Zou (Stanford) | "Computer vision to phenotype human diseases across physiological and molecular scales." | |
12 | 6 | Mon | May | 3 | Chris Yin, James Johnson, Zorian Thornton | Counterfactual inference for single-cell gene expression analysis | |
13 | 6 | Wed | May | 5 | Yongjin Park (UBC) | Causality and gene expression | |
14 | 7 | Mon | May | 10 | Dhruv Yadav, Ashley Stephenson, Alyssa La Fleur | Discussion | |
15 | 7 | Wed | May | 12 | Gerald Quon (UC Davis) | scAlign: a tool for alignment, integration, and rare cell identification from sc-RNA-seq data | |
16 | 8 | Mon | May | 17 | Sophia Jannetty, Mike Merrill, Woody Ahern | Discussion | |
17 | 8 | Wed | May | 19 | Elham Azizi (Columbia) | ML for computational cancer biology | |
18 | 9 | Mon | May | 24 | Mike Merrill, Chris Yin, Woody Ahern | Discussion | |
19 | 9 | Wed | May | 26 | David Knowles (Columbia) | Causal interpretation through multi-omics data analysis | |
20 | 10 | Mon | May | 31 | No lecture -- Memorial Day | ||
21 | 10 | Wed | June | 2 | Quaid Morris (MSKI) | How to be a machine learning biologist? | |
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