3D Slicer atlases - translation to structured terminology
 Share
The version of the browser you are using is no longer supported. Please upgrade to a supported browser.Dismiss

View only
 
 
ABCDEFGHIJKLM
1
Integer LabelText LabelAnatomic RegionAnatomic Region ModifierPrimary Anatomic StructurePrimary Anatomic Structure ModifierSegmented Property Category -- CID 7150++Segmented Property TypeDICOM Context Group for Anatomic Region or Segmented Property TypeSegmented Property Type ModifierColorNotes
2
0 background (R-42018,SRT,"Spatial and Relational Concept")(125040,DCM,"Background")716x rgba(0,0,0,0) Definition - "that which is not part of an object"
3
1 tissue (T-D0050,SRT,"Tissue") (T-D0050,SRT,"Tissue")716y rgb(128,174,128) Default label for bodily tissues
4
2 bone (T-D0050,SRT,"Tissue") (T-D016E,SRT,"Bone")716y rgb(241,214,145)
5
3 skin (T-D0050,SRT,"Tissue") (T-01000,SRT,"Skin")716y rgb(177,122,101)
6
4 connective tissue (T-D0050,SRT,"Tissue") (T-1A200,SRT,"Connective tissue")716y rgb(111,184,210)
7
5 blood (T-D0080,SRT,"Body Substance")(T-C2000,SRT,"Blood")716y rgb(216,101,79)
8
6 organ (T-D0050,SRT,"Tissue") (T-D0060,SRT,"Organ")716y rgb(221,130,101)
9
7 mass (M-01000,SRT,"Morphologically Altered Structure") (M-03000,SRT,"Mass")7159++ rgb(144,238,144) Could be tumor or other lesion
10
8 muscle (T-D0050,SRT,"Tissue") (T-13001,SRT,"Muscle")716y rgb(192,104,88)
11
9 foreign object (A-00004,SRT,"Physical Object") (M-30400,SRT,"Foreign body") 7158++ rgb(220,245,20) Implants, surical instruments, table...
12
10 waste (A-00004,SRT,"Physical Object") (F-61779,SRT,"Waste material")716x rgb(78,63,0)
13
11 teeth (T-D000A,SRT,"Anatomical Structure") (T-54010,SRT,"Tooth")4028++ rgb(255,250,220)
14
12 fat (T-D0050,SRT,"Tissue") (F-03D38,SRT,"Body fat")716y rgb(230,220,70)
15
13 gray matter (T-D0050,SRT,"Tissue") (T-A0096,SRT,"Gray matter")7153 edited rgb(200,200,235) cf. #39 #116
16
14 white matter (T-D0050,SRT,"Tissue") (T-A0095,SRT,"White matter")7153 edited rgb(250,250,210)
17
15 nerve (T-D0050,SRT,"Tissue") (T-D0598,SRT,"Nerve")716y rgb(244,214,49)
18
16 vein (T-D0050,SRT,"Tissue") (T-48000,SRT,"Vein")716y rgb(0,151,206)
19
17 artery (T-D0050,SRT,"Tissue") (T-41000,SRT,"Artery")716y rgb(216,101,79)
20
18 capillary (T-D0050,SRT,"Tissue") (T-40050,SRT,"Capillary")716y rgb(183,156,220)
21
19 ligament (T-D0050,SRT,"Tissue") (T-18010,SRT,"Ligament")716y rgb(183,214,211)
22
20 tendon (T-D0050,SRT,"Tissue") (T-17010,SRT,"Tendon")716y rgb(152,189,207)
23
21 cartilage (T-D0050,SRT,"Tissue") (T-D021B,SRT,"Cartilage")716y rgb(111,184,210)
24
22meniscus (T-D0050,SRT,"Tissue") (T-15009,SRT,"Meniscus")716y rgb(178,212,242)
25
23 lymph node (T-D0050,SRT,"Tissue") (T-C4000,SRT,"Lymph node")716y rgb(68,172,100)
26
24 lymphatic vessel (T-D0050,SRT,"Tissue") (T-C6010,SRT,"Lymphatic vessel")716y rgb(111,197,131)
27
25 cerebro-spinal fluid (T-D0080,SRT,"Body Substance")(T-A1000,SRT,"Cerebrospinal fluid")7153 rgb(85,188,255) cf. # 106
28
26 bile (T-D0080,SRT,"Body Substance")(T-60650,SRT,"Bile")716y rgb(0,145,30)
29
27 urine (T-D0080,SRT,"Body Substance")(T-70060,SRT,"Urine")716y rgb(214,230,130)
30
28 feces (T-D0080,SRT,"Body Substance")(T-59666,SRT,"Feces")716y rgb(78,63,0)
31
29 gas (T-D0080,SRT,"Body Substance")(C-10080,SRT,"Gas")716y rgb(218,255,255)
32
30 fluid (T-D0080,SRT,"Body Substance")(T-D0070,SRT,"Body fluid")716y rgb(170,250,250)
33
31 edema (M-01000,SRT,"Morphologically Altered Structure") (M-36300,SRT,"Edema")7159++ rgb(140,224,228)
34
32 bleeding (M-01000,SRT,"Morphologically Altered Structure") (M-37000,SRT,"Hemorrhage")7159++ rgb(188,65,28)
35
33 necrosis (M-01000,SRT,"Morphologically Altered Structure") (M-54000,SRT,"Necrosis")7159++ rgb(216,191,216)
36
34 clot (M-01000,SRT,"Morphologically Altered Structure") (M-35000,SRT,"Blood clot")7159++ rgb(145,60,66)
37
35 embolism (M-01000,SRT,"Morphologically Altered Structure") (M-35300,SRT,"Embolus")7159++ rgb(150,98,83)
38
36 head (T-D000A,SRT,"Anatomical Structure") (T-D1100,SRT,"Head")4028 rgb(177,122,101)
39
37 central nervous system (T-D000A,SRT,"Anatomical Structure") (T-A0090,SRT,"Central nervous system")7153++ rgb(244,214,49)
40
38 brain (T-D000A,SRT,"Anatomical Structure") (T-A0100,SRT,"Brain")7153++ rgb(250,250,225)
41
39 gray matter of brain (T-D0050,SRT,"Tissue") (T-A2020,SRT,"Cerebral gray matter")7153 edited rgb(200,200,215) cf. #13 #116
42
40 telencephalon (T-D000A,SRT,"Anatomical Structure") (T-A0103,SRT,"Telencephalon")7153++ rgb(68,131,98)
43
41 cerebral cortex (T-D000A,SRT,"Anatomical Structure") (T-A2020,SRT,"Cerebral cortex")7153++ rgb(128,174,128)
44
42 right frontal lobe (T-D000A,SRT,"Anatomical Structure") (T-A2200,SRT,"Frontal lobe")7153++ (G-A100,SRT,"Right") rgb(83,146,164)
45
43 left frontal lobe (T-D000A,SRT,"Anatomical Structure") (T-A2200,SRT,"Frontal lobe")7153++ (G-A101,SRT,"Left") rgb(83,146,164) in the cases like this one, where a code exists for left and right parts of a structure, should those be used, or should left/right modifiers be used?
46
44 right temporal lobe (T-D000A,SRT,"Anatomical Structure") (T-A2500,SRT,"Temporal lobe")7153++ (G-A100,SRT,"Right") rgb(162,115,105)
47
45 left temporal lobe (T-D000A,SRT,"Anatomical Structure") (T-A2500,SRT,"Temporal lobe")7153++ (G-A101,SRT,"Left") rgb(162,115,105)
48
46 right parietal lobe (T-D000A,SRT,"Anatomical Structure") (T-A2300,SRT,"Parietal lobe") 7153++ (G-A100,SRT,"Right") rgb(141,93,137)
49
47 left parietal lobe (T-D000A,SRT,"Anatomical Structure") (T-A2300,SRT,"Parietal lobe") 7153++ (G-A101,SRT,"Left") rgb(141,93,137)
50
48 right occipital lobe (T-D000A,SRT,"Anatomical Structure") (T-A2400,SRT,"Occipital lobe") 7153++ (G-A100,SRT,"Right") rgb(182,166,110)
51
49 left occipital lobe (T-D000A,SRT,"Anatomical Structure") (T-A2400,SRT,"Occipital lobe") 7153++ (G-A101,SRT,"Left") rgb(182,166,110)
52
50 right insular lobe (T-D000A,SRT,"Anatomical Structure") (T-A2610,SRT,"Insula")7153++ (G-A100,SRT,"Right") rgb(188,135,166)
53
51 left insular lobe (T-D000A,SRT,"Anatomical Structure") (T-A2610,SRT,"Insula")7153++ (G-A101,SRT,"Left") rgb(188,135,166)
54
52 right limbic lobe (T-D000A,SRT,"Anatomical Structure") (T-A0036,SRT,"Limbic lobe")7153++ (G-A100,SRT,"Right") rgb(154,150,201) ambiguous? http://en.wikipedia.org/wiki/Limbic_lobe
55
53 left limbic lobe (T-D000A,SRT,"Anatomical Structure") (T-A0036,SRT,"Limbic lobe")7153++ (G-A101,SRT,"Left") rgb(154,150,201) ambiguous? http://en.wikipedia.org/wiki/Limbic_lobe
56
54 right striatum (T-D000A,SRT,"Anatomical Structure") (T-A3100,SRT,"Corpus striatum")7153++ (G-A100,SRT,"Right") rgb(177,140,190)
57
55 left striatum (T-D000A,SRT,"Anatomical Structure") (T-A3100,SRT,"Corpus striatum")7153++ (G-A101,SRT,"Left") rgb(177,140,190)
58
56 right caudate nucleus (T-D000A,SRT,"Anatomical Structure") (T-A3200,SRT,"Caudate nucleus")7153++ (G-A100,SRT,"Right") rgb(30,111,85)
59
57 left caudate nucleus (T-D000A,SRT,"Anatomical Structure") (T-A3200,SRT,"Caudate nucleus")7153++ (G-A101,SRT,"Left") rgb(30,111,85)
60
58 right putamen (T-D000A,SRT,"Anatomical Structure") (T-A3400,SRT,"Putamen")7153++ (G-A100,SRT,"Right") rgb(210,157,166)
61
59 left putamen (T-D000A,SRT,"Anatomical Structure") (T-A3400,SRT,"Putamen")7153++ (G-A101,SRT,"Left") rgb(210,157,166)
62
60 right pallidum (T-D000A,SRT,"Anatomical Structure") (T-A3500,SRT,"Globus pallidus")7153++ (G-A100,SRT,"Right") rgb(48,129,126)
63
61 left pallidum (T-D000A,SRT,"Anatomical Structure") (T-A3500,SRT,"Globus pallidus")7153++ (G-A101,SRT,"Left") rgb(48,129,126)
64
62 right amygdaloid complex (T-D000A,SRT,"Anatomical Structure") (T-A3230,SRT,"Amygdala")7153++ (G-A100,SRT,"Right") rgb(98,153,112)
65
63 left amygdaloid complex (T-D000A,SRT,"Anatomical Structure") (T-A3230,SRT,"Amygdala")7153++ (G-A101,SRT,"Left") rgb(98,153,112)
66
64 diencephalon (T-D000A,SRT,"Anatomical Structure") (T-A0102,SRT,"Diencephalon")7153++ rgb(69,110,53)
67
65 thalamus (T-D000A,SRT,"Anatomical Structure") (T-A4000,SRT,"Thalamus")7153++ rgb(166,113,137)
68
66 right thalamus (T-D000A,SRT,"Anatomical Structure") (T-A4000,SRT,"Thalamus")7153++ (G-A100,SRT,"Right") rgb(122,101,38)
69
67 left thalamus (T-D000A,SRT,"Anatomical Structure") (T-A4000,SRT,"Thalamus")7153++ (G-A101,SRT,"Left") rgb(122,101,38)
70
68 pineal gland (T-D000A,SRT,"Anatomical Structure") (T-B2000,SRT,"Pineal Gland")7153++ rgb(253,135,192)
71
69 midbrain (T-D000A,SRT,"Anatomical Structure") (T-A5100,SRT,"Midbrain")7153++ rgb(145,92,109)
72
70 substantia nigra (T-D000A,SRT,"Anatomical Structure") (T-A5160,SRT,"Substantia nigra")7153++ rgb(46,101,131)
73
71 right substantia nigra (T-D000A,SRT,"Anatomical Structure") (T-A5160,SRT,"Substantia nigra")7153++ (G-A100,SRT,"Right") rgb(0,108,112)
74
72 left substantia nigra (T-D000A,SRT,"Anatomical Structure") (T-A5160,SRT,"Substantia nigra")7153++ (G-A101,SRT,"Left") rgb(0,108,112)
75
73 cerebral white matter (T-D000A,SRT,"Anatomical Structure") (T-A2030,SRT,"Cerebral white matter")7153++ rgb(250,250,225)
76
74 right superior longitudinal fasciculus (T-D000A,SRT,"Anatomical Structure") (T-A2820,SRT,"Superior longitudinal fasciculus")7153++ (G-A100,SRT,"Right") rgb(127,150,88)
77
75 left superior longitudinal fasciculus (T-D000A,SRT,"Anatomical Structure") (T-A2820,SRT,"Superior longitudinal fasciculus")7153++ (G-A101,SRT,"Left") rgb(127,150,88)
78
76 right inferior longitudinal fasciculus (T-D000A,SRT,"Anatomical Structure") (T-A2850,SRT,"Inferior longitudinal fasciculus")7153++ (G-A100,SRT,"Right") rgb(159,116,163)
79
77 left inferior longitudinal fasciculus (T-D000A,SRT,"Anatomical Structure") (T-A2850,SRT,"Inferior longitudinal fasciculus")7153++ (G-A101,SRT,"Left") rgb(159,116,163)
80
78 right arcuate fasciculus (T-D000A,SRT,"Anatomical Structure") (276650,FMA,"Arcuate fasciculus")7153++ (G-A100,SRT,"Right") rgb(125,102,154) SNOMED needs fixing - specifies arcuate as synonym (ratehr than part of) superior longitudinal fasciculus
81
79 left arcuate fasciculus (T-D000A,SRT,"Anatomical Structure") (276650,FMA,"Arcuate fasciculus")7153++ (G-A101,SRT,"Left") rgb(125,102,154)
82
80 right uncinate fasciculus (T-D000A,SRT,"Anatomical Structure") (T-A2830,SRT,"Uncinate fasciculus")7153++ (G-A100,SRT,"Right") rgb(106,174,155)
83
81 left uncinate fasciculus (T-D000A,SRT,"Anatomical Structure") (T-A2830,SRT,"Uncinate fasciculus")7153++ (G-A101,SRT,"Left") rgb(106,174,155)
84
82 right cingulum bundle (T-D000A,SRT,"Anatomical Structure") (T-A2840,SRT,"Cingulum")7153++ (G-A100,SRT,"Right") rgb(154,146,83)
85
83 left cingulum bundle (T-D000A,SRT,"Anatomical Structure") (T-A2840,SRT,"Cingulum")7153++ (G-A101,SRT,"Left") rgb(154,146,83)
86
84 projection fibers 7153++ rgb(126,126,55)
87
85 right corticospinal tract (T-D000A,SRT,"Anatomical Structure") (T-A7093,SRT,"Lateral corticospinal tract")7153++ (G-A100,SRT,"Right") rgb(201,160,133)
88
86 left corticospinal tract (T-D000A,SRT,"Anatomical Structure") (T-A7093,SRT,"Lateral corticospinal tract")7153++ (G-A101,SRT,"Left") rgb(201,160,133)
89
87 right optic radiation (T-D000A,SRT,"Anatomical Structure") (T-A2880,SRT,"Optic radiation")7153++ (G-A100,SRT,"Right") rgb(78,152,141)
90
88 left optic radiation (T-D000A,SRT,"Anatomical Structure") (T-A2880,SRT,"Optic radiation")7153++ (G-A101,SRT,"Left") rgb(78,152,141)
91
89 right medial lemniscus (T-D000A,SRT,"Anatomical Structure") (T-A5271,SRT,"Medial Lemniscus")7153++ (G-A100,SRT,"Right") rgb(174,140,103)
92
90 left medial lemniscus (T-D000A,SRT,"Anatomical Structure") (T-A5271,SRT,"Medial Lemniscus")7153++ (G-A101,SRT,"Left") rgb(174,140,103)
93
91 right superior cerebellar peduncle (T-D000A,SRT,"Anatomical Structure") (T-A6620,SRT,"Superior cerebellar peduncle")7153++ (G-A100,SRT,"Right") rgb(139,126,177)
94
92 left superior cerebellar peduncle (T-D000A,SRT,"Anatomical Structure") (T-A6620,SRT,"Superior cerebellar peduncle")7153++ (G-A101,SRT,"Left") rgb(139,126,177)
95
93 right middle cerebellar peduncle (T-D000A,SRT,"Anatomical Structure") (T-A6630,SRT,"Middle cerebellar peduncle")7153++ (G-A100,SRT,"Right") rgb(148,120,72)
96
94 left middle cerebellar peduncle (T-D000A,SRT,"Anatomical Structure") (T-A6630,SRT,"Middle cerebellar peduncle")7153++ (G-A101,SRT,"Left") rgb(148,120,72)
97
95 right inferior cerebellar peduncle (T-D000A,SRT,"Anatomical Structure") (T-A6640,SRT,"Inferior cerebellar peduncle")7153++ (G-A100,SRT,"Right") rgb(186,135,135)
98
96 left inferior cerebellar peduncle (T-D000A,SRT,"Anatomical Structure") (T-A6640,SRT,"Inferior cerebellar peduncle")7153++ (G-A101,SRT,"Left") rgb(186,135,135)
99
97 optic chiasm (T-D000A,SRT,"Anatomical Structure") (T-A800B,SRT,"Optic chiasm")7153++ rgb(99,106,24)
100
98 right optic tract (T-D000A,SRT,"Anatomical Structure") (T-A8060,SRT,"Optic tract")
7153++ (G-A100,SRT,"Right") rgb(156,171,108)
Loading...