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Supporting Information for
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Identification and characterization of Copy Number Variations Regions in West African taurine cattle
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Félix Goyache*, Lucía Pérez-Pardal, Iván Fernández, Amadou Traoré, Nuria A. Menéndez-Arias, Katherine D. Arias, Isabel Álvarez
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*To whom correspondence and requests should be addressed (e-mail: fgoyache@serida.org)
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This .xlsx file includes:
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Supplementary Table S1. List of Copy Number Variations (CNV) identified using the software PennCNV.
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Supplementary Table S2. List of Copy Number Variations (CNV) identified using the software QuantiSNP.
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Supplementary Table S3. List of CNV Regions identified using the software PennCNV in West African taurine cattle.
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Supplementary Table S4. List of CNV Regions identified using the software PennCNV in West African zebu cattle.
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Supplementary Table S5. List of CNV Regions identified using the software QuantiSNP in West African taurine cattle.
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Supplementary Table S6. List of CNV Regions identified using the software QuantiSNP in West African zebu cattle.
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Supplementary Table S7. List of candidate Copy Number Variations Regions (CNVR) identified in West African taurine cattle.
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Supplementary Table S8. List of candidate Copy Number Variations Regions (CNVR) identified in West African zebu cattle.
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Supplementary Table S9. List of candidate Copy Number Variations Regions (CNVR) identified across West African taurine and zebu cattle.
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Supplementary Table S10. List of candidate genes identified on candidate CNVR in West African taurine cattle.
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Supplementary Table S11. List of candidate genes identified on candidate CNVR in West African zebu cattle.
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Supplementary Table S12. Functional terms enriched clusters identified using candidate CNV regions identified in West African taurine cattle.
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Supplementary Table S13. Functional terms enriched clusters identified using candidate CNV regions identified in West African zebu cattle.
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Supplementary FIGURE S1. Circular map summarizing the relationships between candidate genes belonging to taurine Annotation Cluster FCt30
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Supplementary Table S14. List of trypanotolerance-related and Tick Resistance QTL overlapping with the candidate CNVR identified in West African zebu cattle.
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