A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z | |
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1 | A Giraud & D Poeppeldoi (2012) Cortical oscillations and speech processing: emerging computational principles and operations. Nature Neuroscience 15 [PDF] | |||||||||||||||||||||||||
2 | A Graves, G Wayne, I Danihelka (2014) Neural Turing Machines. arXiv:1410.5401v2 [Link] | |||||||||||||||||||||||||
3 | A precise form of divisive suppression supports population coding in the primary visual cortex. Nature Neuroscience 12(5):637-645 | |||||||||||||||||||||||||
4 | A Theory of Cerebellar Cortex. J. Physiol 202:437-470 | |||||||||||||||||||||||||
5 | Abe, K., Watanabe, D. (2011). Songbirds possess the spontaneous ability to discriminate syntactic rules. Nature Neuroscience, 14(8), 1067–1074. doi:10.1038/nn.2869 pdf | |||||||||||||||||||||||||
6 | Activation of specific interneurons improves V1 feature selectivity and visual perception. Seung-Hee Lee, Alex C. Kwan, Siyu Zhang, Victoria Phoumthipphavong, John G. Flannery, Sotiris C. Masmanidis, Hiroki Taniguchi, Z. Josh Huang, Feng Zhang, Edward S. Boyden, Karl Deisseroth, Yang Dan. Nature (2012) pdf | |||||||||||||||||||||||||
7 | Additional: Jeffery KJ, Jovalekic A, Verriotis M and Hayman R Navigating in a three-dimensional world Target article in Behavioral and Brain Sciences36(5), 523-543 (2013) pdf | |||||||||||||||||||||||||
8 | Adesnik, H., Bruns, W., Taniguchi, H., Huang, Z. J., and Scanziani, M. (2012). A neural circuit for spatial summation in visual cortex.Nature, 490(7419):226-231. pdf supplement | |||||||||||||||||||||||||
9 | Afsheen Afshar, Gopal Santhanam, Byron M. Yu, Stephen I. Ryu, Maneesh Sahani, Krishna V. Shenoy. Single-Trial Neural Correlates of Arm Movement Preparation. Neuron, Volume 71, Issue 3, 555-564, 11 August 2011 pdf | |||||||||||||||||||||||||
10 | Agarwal G, et al. (2014). Spatially distributed local fields in the hippocampus encode rat position. Science 344. [PDF] | |||||||||||||||||||||||||
11 | Ahna R Girshick, Michael S Landy, Eero P Simoncelli. Cardinal rules: visual orientation perception reflects knowledge of environmental statistics. Nature Neuroscience, vol.14(7), pp. 926–932, Jul 2011. | |||||||||||||||||||||||||
12 | Akrami A, Kopec CD, Diamond ME & Brody CD (2018) Posterior parietal cortex represents sensory history and mediates its effects on behaviour. Nature [Link] | |||||||||||||||||||||||||
13 | Alberto Bernacchia, Hyojung Seo, Daeyeol Lee, Xiao-Jing Wang. A reservoir of time constants for memory traces in cortical neurons Nature Neuroscience, Vol. 14, No. 3. (13 March 2011), pp. 366-372 pdf | |||||||||||||||||||||||||
14 | Alireza Soltani, Xiao-Jing Wang. Synaptic computation underlying probabilistic inference Nature Neuroscience, Vol. 13, No. 1. (13 January 2010), pp. 112-119 pdf supplement | |||||||||||||||||||||||||
15 | Allen Cheung, David Ball, Michael Milford, Gordon Wyeth, Janet Wiles (2012). Maintaining a Cognitive Map in Darkness: The Need to Fuse Boundary Knowledge with Path Integration. PLoS Comp Bio 8 [PDF] | |||||||||||||||||||||||||
16 | Alvarez & Squire (1994) | |||||||||||||||||||||||||
17 | Amano, Wandell & Dumoulin (2009), Visual Field Maps, Population Receptive Field Sizes, and Visual Field Coverage in the Human MT+ Complex. J. Neurophys. 102:2704-2718 | |||||||||||||||||||||||||
18 | Andrew B. Watson, Albert J. Ahumada, Jr. (2005) A standard model for foveal detection of spatial contrast. Journal of Vision 5, 717-740. | |||||||||||||||||||||||||
19 | Arcas BA, Fairhall AL & Bialek W (2003) Computation in a Single Neuron: Hodgkin and Huxley Revisited. Neural Computation [Link] | |||||||||||||||||||||||||
20 | Arnulf B. A. Graf, Adam Kohn, Mehrdad Jazayeri, J. Anthony Movshon. Decoding the activity of neuronal populations in macaque primary visual cortex. Nature Neuroscience, pp. 239-245. pdf (supp) | |||||||||||||||||||||||||
21 | Arseny Finkelstein, Dori Derdikman, Alon Rubin, Jakob N. Foerster, Liora Las & Nachum Ulanovsky (2015). Three-dimensional head-direction coding in the bat brain | |||||||||||||||||||||||||
22 | B Agüera y Arcas, A Fairhall & W Bialek (2003) Computation in a Single Neuron: Hodgkin and Huxley Revisited Neural Computation 15 [PDF] | |||||||||||||||||||||||||
23 | B Sengupta, A Faisal, S Laughlin & J Niven (2013) The effect of cell size and channel density on neuronal information encoding and energy efficiency. Journal of Cerebral Blood Flow & Metabolism. 33 [PDF] | |||||||||||||||||||||||||
24 | B Vintch, A Zaharia, J A Movshon and E P Simoncelli. Efficient and direct estimation of a neural subunit model for sensory coding. Adv. Neural Information Processing Systems (NIPS), vol.25 2012. pdf | |||||||||||||||||||||||||
25 | background reading: first 7 pages of Lee, Pedersen & Mumford (2003) | |||||||||||||||||||||||||
26 | background reading: Using Blur to Affect Perceived Distance and Size Held et al (2010) | |||||||||||||||||||||||||
27 | Bak JH, Choi JY, Akrami A, Witten IB & Pillow JW (2016). Adaptive optimal training of animal behavior. Advances in Neural Information Processing Systems 29. [PDF] | |||||||||||||||||||||||||
28 | Ballard & Jehee (submitted manuscript) | |||||||||||||||||||||||||
29 | Ballard & Jehee. manuscript under review. | |||||||||||||||||||||||||
30 | Banino et al. & Deepmind (2018) Vector-based navigation using grid-like representations in artificial agents. Nature [Link] | |||||||||||||||||||||||||
31 | Barlow, H. B. (1961). Possible principles underlying the transformations of sensory messages. In W. A. Rosenblith (Ed.), Sensory communication (pp. 217–234). Cambridge, MA: MIT Press. pdf | |||||||||||||||||||||||||
32 | Barlow, H. B. (2001). Redundancy reduction revisited. Network, 12, 241–253. pdf | |||||||||||||||||||||||||
33 | Bayesian just-so stories in psychology and neuroscience. Bowers, Jeffrey S.; Davis, Colin J. Psychological Bulletin, Vol 138(3), May 2012, 389-414. doipdf [comments by Griffiths et al.] [response to comments by Bowers and Davis] | |||||||||||||||||||||||||
34 | Beck, Ma, Kiani, Hanks, Churchland, Roitman, Shadlen, Latham & Pouget (2008) | |||||||||||||||||||||||||
35 | Behrens, Woolrich, Walton & Rushworth (2007) | |||||||||||||||||||||||||
36 | Bengio Y & Fischer A (2016) Early Inference in Energy-Based Models Approximates Back-Propagation. arXiv [Link] | |||||||||||||||||||||||||
37 | Benna MK & Fusi S (2016) Computational principles of synaptic memory consolidation. Nat. Neurosci. [Link] | |||||||||||||||||||||||||
38 | Biswal B & Dasgupta C (2002) Neural Network Model for Apparent Deterministic Chaos in Spontaneously Bursting Hippocampal Slices. Physical Review Letters 88 [PDF] | |||||||||||||||||||||||||
39 | Biswal B & Dasgupta C (2002) Stochastic neural network model for spontaneous bursting in hippocampal slices. Physical Review E 66 [PDF] | |||||||||||||||||||||||||
40 | Boerlin M, Denève S, 2011 Spike-Based Population Coding and Working Memory. PLoS Comput Biol 7(2): e1001080. doi:10.1371/journal.pcbi.1001080 | |||||||||||||||||||||||||
41 | Boris Gourévitch and Jos J. Eggermont. Evaluating Information Transfer Between Auditory Cortical Neurons. Journal of Neurophysiology March 2007 vol. 97 no. 3 2533-2543 pdf | |||||||||||||||||||||||||
42 | Bradde S & Bialek W. (2016). PCA meets RG arXiv:1610.09733 | |||||||||||||||||||||||||
43 | Bred E. Pfeiffer & David J. Foster Hippocampal place-cell sequences depict future paths to remembered goals Nature 497, (2013) pdf | |||||||||||||||||||||||||
44 | Brendan K. Murphy, Kenneth D. Miller. Balanced Amplification: A New Mechanism of Selective Amplification of Neural Activity Patterns. Neuron2008 | |||||||||||||||||||||||||
45 | Bring your own (COSYNE) poster day | |||||||||||||||||||||||||
46 | Brunel & Nadal (1998) Mutual Information, Fisher Information, and Population Coding Neural Computation 10(7):1731-57 | |||||||||||||||||||||||||
47 | Burton, S. D., Ermentrout, G. B., Urban, N. N. Intrinsic heterogeneity in oscillatory dynamics limits correlation-induced neural synchronization. Journal of neurophysiology, (July 2012), 2115–2133. pdf | |||||||||||||||||||||||||
48 | C Hillar, J Sohl-Dickstein, & K Koepsell Efficient and optimal binary Hopfield associative memory storage using minimum probability flow (2012) | |||||||||||||||||||||||||
49 | C Hillar, NM Tran, & K Kopsell Robust exponential binary pattern storage in Little-Hopfield networks (2013) | |||||||||||||||||||||||||
50 | C Simoncini, L Perrinet, A Montagnini, P Mamassian & G Masson (2012) More is not always better: adaptive gain control explains dissociation between perception and action. Nature Neuroscience 15 [Link] | |||||||||||||||||||||||||
51 | Chang L, Tsao DY (2017) The Code for Facial Identity in the Primate Brain. Cell [Link] | |||||||||||||||||||||||||
52 | Chase, Schwartz, & Kass. J. Neurosci 30, 13873-13882 (2010). pdf | |||||||||||||||||||||||||
53 | Chen et al (2009) | |||||||||||||||||||||||||
54 | Chen, B.; Wornell, G.W.; Analog error-correcting codes based on chaotic dynamical systems. IEEE Transactions on Communications, vol. 46, no. 7, July 1998 pdf | |||||||||||||||||||||||||
55 | Chenkov N, Sprekeler H & Kempter R. (2017) Memory replay in balanced recurrent networks. PloS Comp. Biol. [Link] | |||||||||||||||||||||||||
56 | Chris Eliasmith, Terrence C. Stewart, Xuan Choo, Trevor Bekolay, Travis DeWolf, Yichuan Tang, Daniel Rasmussen. A Large-Scale Model of the Functioning Brain. Science 30 November 2012. Vol. 338 no. 6111 pp. 1202-1205 pdf supplement online videos [blog post] | |||||||||||||||||||||||||
57 | Christian K. Machens, Ranulfo Romo, & Carlos D. Brody Flexible Control of Mutual Inhibition: A Neural Model of Two-Interval Discrimination Science305, 5712 (2005) pdf | |||||||||||||||||||||||||
58 | Clark, D. A., Fitzgerald, J. E., Ales, J. M., Gohl, D. M., Silies, M. A., Norcia, A. M., and Clandinin, T. R. (2014). Flies and humans share a motion estimation strategy that exploits natural scene statistics. Nature Neuroscience, 17(2):296-303. pdf supplement (14MB) | |||||||||||||||||||||||||
59 | Coding session for last week’s paper using Expectation Maximization. Link to factor analysis code. | |||||||||||||||||||||||||
60 | Coding session for last week’s papers. Link to Ising model data. | |||||||||||||||||||||||||
61 | Consciousness as Integrated Information: a Provisional Manifesto. Tononi G. Biol. Bull. 215: 216-242. (December 2008) pdf | |||||||||||||||||||||||||
62 | Continued coding session for Expectation Maximization. Link to factor analysis code. | |||||||||||||||||||||||||
63 | Control and Computing. Pg. 368-377, (1999). [PDF] | |||||||||||||||||||||||||
64 | Cortical Preparatory Activity: Representation of Movement or First Cog in a Dynamical Machine? Churchland, M.; Cunningham, J.; Kaufman, M.; Ryu, S. & Shenoy, K. Neuron, 2010, 68, 387-400 pdf | |||||||||||||||||||||||||
65 | Cristina Domnisoru, Amina A. Kinkhabwala, David W. Tank. Membrane potential dynamics of grid cells. Nature, Vol. 495, No. 7440. (14 March 2013), pp. 199-204 pdf supplement | |||||||||||||||||||||||||
66 | Çukur, T., Nishimoto, S., Huth, A. G., and Gallant, J. L. (2013). Attention during natural vision warps semantic representation across the human brain.Nature Neuroscience, 16(6):763-770. pdf supplement (24MB) | |||||||||||||||||||||||||
67 | Cummins, B., Cortez, R., Foppa, I. M., Walbeck, J., Hyman, J. M. (2012). A Spatial Model of Mosquito Host-Seeking Behavior. PLoS Computational Biology, 8(5). | |||||||||||||||||||||||||
68 | Decision-related activity in sensory neurons reflects more than a neuron’s causal effect. Nature 459:89-92 | |||||||||||||||||||||||||
69 | Division and subtraction by distinct cortical inhibitory networks in vivo.Nathan R. Wilson, Caroline A. Runyan, Forea L. Wang, Mriganka Sur. 2012 Nature pdf | |||||||||||||||||||||||||
70 | Dominik Endres & Peter Földiák Interpreting the Neural Code with Formal Concept Analysis Advances in Neural Information Processing Systems (NIPS) 21, (2009) | |||||||||||||||||||||||||
71 | Douglas R. Ollerenshaw, He J.V. Zheng, Daniel C. Millard, Qi Wang & Garrett B. Stanley The Adaptive Trade-Off between Detection and Discrimination in Cortical Representations and Behavior Neuron 81(5), (2014) pdf | |||||||||||||||||||||||||
72 | Druckmann, S. and Chklovskii, D. B. Neuronal circuits underlying persistent representations despite time varying activity. Current Biology 22(22):2095-2103, 2012 pdf supplement | |||||||||||||||||||||||||
73 | Dual Roles for Spike Signaling in Cortical Neural Populations | |||||||||||||||||||||||||
74 | Dual roles for spike signaling in cortical neural populations. | |||||||||||||||||||||||||
75 | Dumoulin & Wandell (2008), Population receptive field estimates in human visual cortex Neuroimage 39:647-660 | |||||||||||||||||||||||||
76 | E. Doi, D. C. Balcan, and M. S. Lewicki, Robust coding over noisy overcomplete channels, IEEE Transactions on Image Processing, 16 (2): 442-452, 2007. pdf | |||||||||||||||||||||||||
77 | E. Schneidman, M. J. Berry II, R. Segev, W. Bialek. Weak pairwise correlations imply strongly correlated network states in a neural population. Nature 440, 1007-1012, 2006. pdf | |||||||||||||||||||||||||
78 | Elsayed GF & Cunningham JP (2017) Structure in neural population recordings: an expected byproduct of simpler phenomena? Nat. Neurosci. [Link] | |||||||||||||||||||||||||
79 | Emergence of complex cell properties by learning to generalize in natural scenes. Nature, 457: 83-86. | |||||||||||||||||||||||||
80 | Emre Neftci, Srinjoy Das, Bruno Pedroni, Kenneth Kreutz-Delgado, & Gert Cauwenberghs Event-driven contrastive divergence for spiking neuromorphic systems Frontiers in Neuroscience 7 (2014) pdf | |||||||||||||||||||||||||
81 | Equalization of Ocular Dominance Columns Induced by an Activity-Dependent Learning Rule and the Maturation of Inhibition. J Neurosci 29(20):6514-6525 | |||||||||||||||||||||||||
82 | Erin R. Boykin, Pramod P. Khargonekar, Paul R. Carney, William O. Ogle and Sachin S. Talathi. Detecting effective connectivity in networks of coupled neuronal oscillators. Journal of Computational Neuroscience, 2011 DOI: 10.1007/s10827-011-0367-3 | |||||||||||||||||||||||||
83 | Eve Marder. Variability, compensation, and modulation in neurons and circuits PNAS 2011. pdf | |||||||||||||||||||||||||
84 | Extra material: Sequential Optimal Design of Neurophysiology Experiments, Jeremy Lewi, Robert Butera, Liam Paninski. Neural Computation 21, 619-687 (2009) pdf | |||||||||||||||||||||||||
85 | Field G.D., Gauthier J.L., Sher A., Greschner M., Machado T.A., Jepson L.H., Shlens J., Gunning D.E., Mathieson K., Dabrowski W., Paninski L., Litke A.M., Chichilnisky E.J. Functional connectivity in the retina at the resolution of photoreceptors. Nature 467, 2010 pdf | |||||||||||||||||||||||||
86 | Fiser, J., Berkes, P., Orban, G, and Lengyel, M. (2010). Statistically optimal perception and learning: from behavior to neural representations. Trends in Cognitive Sciences, 14:3, 119-130. pdf | |||||||||||||||||||||||||
87 | Franz Weber, Christian K. Machens, Alexander Borst. Disentangling the functional consequences of the connectivity between optic-flow processing neurons. Nature Neuroscience 15, 441–448 (2012) pdf supplement | |||||||||||||||||||||||||
88 | Friedkin N, Proskurnikov A, Tempo R & Parsegov S. (2016). Network science on belief system dynamics under logic constraints. Science 354. [PDF] | |||||||||||||||||||||||||
89 | Ganguli, D. and Simoncelli, E.P. Implicit encoding of prior probabilities in optimal neural populations. Advances in neural information processing systems (NIPS) 2011 | |||||||||||||||||||||||||
90 | Ganguli, Huh & Sompolinsky (2008) | |||||||||||||||||||||||||
91 | Gating of Signal Propagation in Spiking Neural Networks by Balanced and Correlated Excitation and Inhibition. Kremkow J, Aertsen A, Kumar A, J Neurosci (2010). pdf | |||||||||||||||||||||||||
92 | Gatys L., Ecker A. & Bethge M. (2015). A Neural Algorithm of Artistic Style. arXiv:1508.06576. | |||||||||||||||||||||||||
93 | Gauthier JL & Tank DW (2017) Context-invariant encoding of reward location in a distinct hippocampal population. bioRxiv [Link] | |||||||||||||||||||||||||
94 | Geisler, Najemnik & Ing (submitted manuscript) | |||||||||||||||||||||||||
95 | Generating Coherent Patterns of Activity from Chaotic Neural Networks Neuron 63:544-557 | |||||||||||||||||||||||||
96 | Golub MD, Sadtler PT, Oby ER, Quick KM, Ryu SI, Tyler-Kabara EC, Batista AP, Chase SM & Yu BM (2018) Learning by neural reassociation. Nature Neuroscience [Link] | |||||||||||||||||||||||||
97 | Goris, R, Simoncelli E & Movshon A (2015) Origin and Function of Tuning Diversity in Macaque Visual Cortex. Neuron 88 [PDF] | |||||||||||||||||||||||||
98 | Grabska-Barwinska A, et al. (2017) A probabilistic approach to demixing odors. Nature Neuroscience 20. [PDF] | |||||||||||||||||||||||||
99 | Gregory W Schwartz, Haruhisa Okawa, Felice A Dunn, Josh L Morgan, Daniel Kerschensteiner, Rachel O Wong, Fred Rieke. The spatial structure of a nonlinear receptive field. Nature Neuroscience 15, 1572–1580 (2012) doi:10.1038/nn.3225 pdf | |||||||||||||||||||||||||
100 | H. Sebastian Seung Emergence of Adaptive Computation by Single Neurons in the Developing Cortex Proceedings of the National Academy of Sciences of the United States of America (PNAS) 93 (1996) pdf |