Working MRA Mucosal Catalog

	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P	Q	R	S	T	U	V	W	X	Y	Z	AA	AB	AC	AD	AE	AF
1		COLLABORATOR CONTACT INFORMATION/PUBLIC DATABASE INFORMATION						CELL LINE CLINICAL FEATURES					DEMOGRAPHIC INFORMATION				CELL LINE GENOMIC INFORMATION								CELL LINE GROWTH AND FREEZING CONDITIONS
2	Name of cell line	Collaborator Name	Institution (laboratory)	Email contact	Cell line availability	CCLE name	Dep Map ID	Cancer Type	Type of Melanoma	Tissue Origin of Cell line	Location of Primary Tumor	Stage of disease at tissue collection	Species	Gender	Age of diagnosis	Ethnicity	Oncogenic profile*	Oncogenic profile shared with tumor sample	Other mutations	Total # mutations	NGS used	Genomic references (PMID)	Genomic profiling	Comments	Mycoplasma tested/Result	Growth Properties	Culture Media	Culture Conditions	Doubling Time	Storage conditions	Freezing media	Culture/Other Comments
3	MB2141	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	YES	not assigned	not assigned	Melanoma	Mucosal	subcutaneous metastasis	anorectal	Metastatic	Human	Female	63	Caucasian	EML4-ALK fusion					29054983, 30185782	See comments	Patient tumor has WES. PDX model has RNAseq.	Yes (Negative)	adherent	RPMI 1640, 10% FBS	Temperature: 37°C, 5% CO2	2 days	Liquid nitrogen	90% FBS + 10% DMSO
4	MB3443	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	YES	not assigned	not assigned	Melanoma	Mucosal	subcutaneous neck metastais	Vulvovaginal	Metastatic	Human	Female	63	Caucasian	NRAS Q61H, TSC2 A583T, RICTOR D1432N, CDKN2A loss					29054983, 30185782	See comments	Patient tumor has WES, Foundation Medicine testing. PDX model has RNAseq.	Yes (Negative)	adherent	RPMI 1640, 10% FBS	Temperature: 37°C, 5% CO2	3 days	Liquid nitrogen	90% FBS + 10% DMSO
5	MB4628	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	YES	N/A	N/A	Melanoma	Mucosal	Primary nasopharyngeal	nasopharyngeal		Human	Male	85	Caucasian	NRAS Q61R						RNAseq	Unpublished.
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11		COLLABORATOR CONTACT INFORMATION/PUBLIC DATABASE INFORMATION						PDX CLINICAL FEATURES					DEMOGRAPHIC INFORMATION				PDX MODEL GENOMIC INFORMATION
12	Name of PDX Model	Collaborator Name	Institution (laboratory)	Email contact	PDX availability	CCLE name	Dep Map ID	Cancer Type	Type of Melanoma	Tissue Origin of PDX	Location of Primary Tumor	Stage of disease at tissue collection	Species	Gender	Age of diagnosis	Ethnicity	Oncogenic profile*	Oncogenic profile shared with tumor sample	Other mutations	Total # mutations	NGS used	Genomic references (PMID)	Genomic profiling	Comments
13	MB2141	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	YES	not assigned	not assigned	Melanoma	Mucosal	subcutaneous metastasis	anorectal	Metastatic	Human	Female	63	Caucasian	EML4-ALK fusion					29054983, 30185782	See comments	Patient tumor has WES. PDX model has RNAseq.	Yes (Negative)	adherent	RPMI 1640, 10% FBS	Temperature: 37°C, 5% CO2	2 days	Liquid nitrogen	90% FBS + 10% DMSO
14	MB3443	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	YES	N/A	N/A	Melanoma	Mucosal	subcutaneous neck metastais	vulvovaginal	Metastatic	Human	Female	63	Caucasian	NRAS Q61H, TSC2 A583T, RICTOR D1432N, CDKN2A loss					29054983, 30185782	RNAseq	Patient tumor has WES, Foundation Medicine testing.
15	MB4628	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	YES	N/A	N/A	Melanoma	Mucosal	Primary nasopharyngeal	nasopharyngeal		Human	Male	85	Caucasian	NRAS Q61R					N/A	RNAseq	Unpublished.
16	MB4311	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	YES (Short-term culture)	N/A	N/A	Melanoma	Mucosal	Primary rectum	rectum		Human	Male	60	Caucasian	KRAS A146T, SF3B1 R625H, MYC amp, PTEN splice, ATM Q1765R, TSC1 H732Y, PMS2 H479Q					N/A (publication in progress)	RNAseq	Patient tumor has Foundation Medicine testing.
17	MB4103	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	lymph node	anal canal	Lymph node metastasis	Human	Male	41	Caucasian	NRAS Q61R					N/A	RNAseq	Patient tumor has WES, Foundation Medicine testing.
18	MB4079	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	Primary Nasopharyngeal	nasopharyngeal		Human	Male	75	Caucasian	NRAS Q61H, GNAQ amp, GNAS S455P, PTEN loss, CDKN1A amp, CCND3 amp, JAK2 V617F, MAP3K1 S939C, PREX2 amp, PTCH1 FS, SPTA1 G66R					N/A	RNAseq	Patient tumor has WES, Foundation Medicine testing.
19	MB4414	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	Primary rectum	rectum		Human	Male	60	Caucasian	NRAS G13D, NF1 W696fs*4, SF3B1 R625H					N/A	RNAseq	Patient tumor has Foundation Medicine testing.
20	MB3949	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	Primary rectum	rectum		Human	Female	57	Caucasian	KIT L576P					N/A	RNAseq	Patient tumor has WES.
21	MB4723	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	small bowel	vulvovaginal	Metastatic	Human	Female	41	Caucasian	NF1 L1305*, ATM rearr, CDK4 amp, CBL del ex8-9, TSC2 N958S, KDR amp, KIT amp, MDM2 amp					N/A	RNAseq	Patient tumor has Foundation Medicine testing.
22	MB3532	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	brain	vulvovaginal	Metastatic	Human	Female	57	Caucasian	Pan-negative, PTPN11 D425N					30185782	RNAseq	Patient tumor has Foundation Medicine testing.
23	MB1816	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	spleen	anorectal	Metastatic	Human	Female	69	Caucasian	Pan-negative					29054983, 30185782	RNASeq	Patient tumor has WES.
24	MB2277	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	primary left nasal sinusoid	left nasal sinusoid		Human	Female	85	Caucasian	Pan-negative, TSC1 N762S, KDR Rearr., B2M amp, CHD2 amp, IGF1R amp, IRF4 amp, IRS2 H29insN, MAP2K1 P15A					29054983, 30185782	RNAseq	Patient tumor has WES, Foundation Medicine testing.
25	MB4879	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	groin lymph node	vagina/right clitoral bone	lymph node metastasis	Human	Female	44	Hispanic	BRAF wt.					N/A	N/A	Patient tumor has only had BRAF testing and was wild-type.
26	MB5032	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	primary right nasal cavity	right nasal cavity		Human	Male	70	Caucasian	BRAF wt, NRAS wt, KIT wt.					N/A	N/A	Patient tumor has only had BRAF, NRAS, and KIT testing and was wild-type.
27	MB1320	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	lymph node	vulvovaginal	Lymph node metastasis	Human	Female	41	Caucasian	N/A					29054983, 30185782	RNAseq	Patient tumor has WES.
28	MB4968	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	inguinal lymph node	right lateral anal verge	Lymph node metastasis	Human	Male	62	Caucasian	N/A					N/A	N/A	Unpublished.
29	MB5101	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	inguinal lymph node	anal canal	Lymph node metastasis	Human	Male	43	Caucasian	NF1 splice 7458- 3_7501del47, KEL rearrangement intron 1, IGF1R amp					N/A
30	MB5205	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	primary nasal	nasal		Human	Male	66	Caucasian	NF2 rearrangement intron 12, RAD21 amp, TP53 F270L					N/A
31	MB5233	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	axillary lymph node	right clitoral hone	axillary lymph node metastasis	Human	Female	39	Caucasian	NF1 splice 7458- 2A>G and KRAS amp, CCND1 amp, FGF19 amp, FGF3 amp, FGF4 amp, GNAS amp, NFKBIA amp					N/A
32	MB5384	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	rectal	rectal	local metastasis	Human	Male	73	Caucasian	KIT K642E + NF1 V432fs7, G842fs23, TSC1 D998E, TSC2 A853T					N/A
33	MB5719	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	primary rectal	rectal	local metastasis	Human	Male	73	Caucasian	KIT K642E + NF1 V432fs7, G842fs23, TSC1 D998E, TSC2 A853T					N/A
34	MB5867	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	primary right paranasal sinus cavity	right paranasal sinus cavity		Human	Male	74	Caucasian	Unknown					N/A
35	MB5994	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	nasal primary	nasal		Human	Male	78	Caucasian	Unknown					N/A
36	MB6115	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	nasal primary	nasal		Human	Male	79	Caucasian	EGFR K852R					N/A
37	MB6256	Kasey Couts	University of Colorado	KASEY.COUTS@CUANSCHUTZ.EDU	NO	N/A	N/A	Melanoma	Mucosal	oral primary	oral		Human	Male	71	Caucasian	Unknown					N/A
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