Minimum Teosinte Path SNPs.xlsx

	A	B	C	E	F	K	L
1	NOTE: two Min Teo Path NILs were not genotyped by RAD. The estimated provided in the RAD SNP tab are estimates based on the Golden Gate SNPs.
2	There is a possibility that smaller introgressions that were not identified by Golden Gate may be hiding and would have been revealed by RAD.
3	Also because there are fewer markers with Golden Gate, the introgression may be longer since a more precice boundary couldn't be identified
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5	Family	Donor	Generation	Color coding in Golden Gate SNPs tab		Color coding in RAD SNPs tab
6	Z029	PI 384065	BC4S2	AA	White(AA)=homozygous B73	The genotypes reported in this file consist of a CAPITAL LETTER followed by
7	Z030	PI 384066	BC4S2	AB	Pink(AB)=heterozygous	a lower case letter in parentheses.
8	Z031	PI 384071	BC4S2 and DH	BB	Green(BB)=homozygous teosinte	The CAPTIAL LETTER is the imputed value.
9	Z032	Ames 21785	BC4S2	--	-- is missing data due to polymorphism	The (lower case letter) is the original SNP call after processing the RAD seq data.
10	Z033	Ames 21786	BC4S2
11	Z034	Ames 21789	BC4S2			A(a)	A = homozygous B73 (red/pink, if using user friendly version)
12	Z035	Ames 21814	BC4S2	*** The genetic map coordinates are based on		H(n)	H = heterozygous (yellow)
13	Z036	Ames 21889	BC4S2	the NAM genetic map and does not reflect the		B(b)	B = homozygous teosinte (green)
14	Z037	Ames 21809	BC4S2	genetic map of the teosinte NILs.***
15	Z038	Ames 21812	BC4S2			genomic positions are in AGP.v1
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