ABCDEFGHIJKLMNOPQRSTUVWXYZ
1
Designs picked out as pseudoknots by JRSequenceG-quad?I-motif?IDShows as pk in NuPACKShows as pk in EternaFoldThreshknot
2
11333044_JR_RYOpseu#2HP_003_JR
GGGAACGACUCGAGUAGAGUCGAAAACAUUCGUACGCAACGAAGCGUACGUCAUUACGCAAAUGACGUAAAGCGUACUAUCUCUUCGGAGGUAGAAAAGAAACAACAACAACAAC
#N/A#N/A11333044yy
3
11368818_U31_LLmulti1_ucad
GGGAACGACUCGAGUAGAGUCGAAAAGGUCAGGUGGCAGCACCACGACACUGGUCGCGGCGACCGAGCCGAACAGAGCGGGCGUUCGUGCUUGCAAAAGAAACAACAACAACAAC
#N/A#N/A11368818yy
4
11381957_Pseudoknot-CCUGUUGCAU_IceBolt
GGGAACGACUCGAGUAGAGUCGAAAACAUAGUAUACCCUGUUGCAUGUAUACUAUGAUAUACCGUAAUGCAACGGACGGUGCGUUCGCGCAUCGAAAAGAAACAACAACAACAAC
#N/A#N/A11381957yn
5
11382808_pseudoknor PKB133(mjt43rd)_mjt
GGGAACGACUCGAGUAGAGUCGAAAACGCUCAACUCAUGGAGCGCACGACGGAUCACCAUCGAUUCGACAUGAGAACACAGAGUUCGCUCUGUGAAAAGAAACAACAACAACAAC
#N/A#N/A11382808yy
6
11382972_RLT-50 PKB 131_Rivalium
GGGAACGACUCGAGUAGAGUCGAAAACGCUCAACUCAUGGAGCGCAAGACGAAUAGCUACAUAUUCGACAUGAGAACAUCCUGUUCGCAGGAUGAAAAGAAACAACAACAACAAC
#N/A#N/A11382972yn
7
11385432_Ruminococcaceae bacterium D16 Streptococcus sRNA SpF59 (ldcC RNA)_Eli Fisker
GGGAACGACUCGAGUAGAGUCGAAAAGGACCACUCCUGCGGGAGUUAAGGCCAUACGGACAGCCGGGUCCACUGCCGACGAUCUUCGGAUUGUCAAAAGAAACAACAACAACAAC
GGGAGUUAAGGCCAUACGGACAGCCGGG#N/A11385432yn
8
11385436_unclassified sequences Streptococcus sRNA SpF59 (ldcC RNA)_Eli Fisker
GGGAACGACUCGAGUAGAGUCGAAAAGGACCGCCCUUUUGGGCUAAGGCCAUACGGACAGCCGGGUCCACUGCCGAGUCGAUCUUCGGAUUGACAAAAGAAACAACAACAACAAC
GGGCUAAGGCCAUACGGACAGCCGGG#N/A11385436yn
9
11385443_Clostridiales bacterium 44_9 Streptococcus sRNA SpF59 (ldcC RNA)_Eli Fisker
GGGAACGACUCGAGUAGAGUCGAAAAGGACUACCCGUCAGGGUUAAGGCCAUACGGACAGCCGGGUCCACUGCCGAGACUAACUUCGGUUGGUCAAAAGAAACAACAACAACAAC
GGGUUAAGGCCAUACGGACAGCCGGG#N/A11385443yy
10
11385445_Ruminococcus obeum CAG_39 Streptococcus sRNA SpF59 (ldcC RNA)_Eli Fisker
GGGAACGACUCGAGUAGAGUCGAAAAGGACUACCCGUCAGGGUUAAGGCCAUACGGACAGCCGGGUCCACUGCCGAGUCUAUCUUCGGAUGGACAAAAGAAACAACAACAACAAC
GGGUUAAGGCCAUACGGACAGCCGGG#N/A11385445yn
11
11413764_PSeudoknot paied nucleotide_Trentis1
GGGAACGACUCGAGUAGAGUCGAAAAAGCAACGACUAGGACCGGCGAGACAAAGGACCGAUAGCUAAUCGUAACGACAAGCGGUUCGUUGCUUGAAAAGAAACAACAACAACAAC
#N/A#N/A11413764yy
12
11416503_JL Knot my problem 3_jandersonlee
GGGAACGACUCGAGUAGAGUCGAAAAGUGGUGGAUCUAGAACCACAAUAACUAGAUCAAAGAUCUAGUCUAGAUCAGCGUACAUUCGUGUACGCAAAAGAAACAACAACAACAAC
#N/A#N/A11416503yy
13
11417294_PKB132 mjt88_mjt
GGGAACGACUCGAGUAGAGUCGAAAACGCUCAACCUCAGAGCGCAAGAGUCGAACGAAUACAGUUCGACAUGAGGAGCUGAGGUUCGCCUCAGCAAAAGAAACAACAACAACAAC
#N/A#N/A11417294yn
14
11417631_JL PKB132 mjt88 mod 2_jandersonlee
GGGAACGACUCGAGUAGAGUCGAAAACGUGCAAGCGCUGCACGAAAAAGUCGAUCGAAUACCGAUCGACAAGCGCUGGACAGUUUCGACUGUCCAAAAGAAACAACAACAACAAC
#N/A#N/A11417631yy
15
11418235_Juspseu_001_Juster
GGGAACGACUCGAGUAGAGUCGAAAAUAAGAAAGCUGACCAGCUAUGAGGUCAUACAUCGUCAUAGCACAAAAUAACGAUCAGUUCGCUGGUCGAAAAGAAACAACAACAACAAC
#N/A#N/A11418235yn
16
11442417_U276_ucad
GGGAACGACUCGAGUAGAGUCGAAAACGAAGUUUUGGCAGUAGCACGAGCGAGCUACUUUGCACAGCUCGAUCCCAGCUGUAUUUCGAUACAGCAAAAGAAACAACAACAACAAC
#N/A#N/A11442417yn
17
11445472_JL URS0000D69DFD_882102 Eli mod 2_jandersonlee
GGGAACGACUCGAGUAGAGUCGAAAAAGGCAUCGUAUCAUUGCUUCGAAGCCAAACUAGAAACUAGAAAGCAGUGAGCUCACAUUCGUGUGAGCAAAAGAAACAACAACAACAAC
#N/A#N/A11445472yy
18
11446272_JL URS0000D68328_1897046 Eli mod_jandersonlee
GGGAACGACUCGAGUAGAGUCGAAAAGGACUACCCGUCAGGGUUAAGGCCAUACGGACAGCCGGGUCCAAUGCCGAGCCAUGAUUCGUCAUGGCAAAAGAAACAACAACAACAAC
GGGUUAAGGCCAUACGGACAGCCGGGCCGGGUCCAAUGCCGAGCC11446272yn
19
11446831_t5_from_2TPK resubmitted_spvincent
GGGAACGACUCGAGUAGAGUCGAAAAUAAGCUGACCAGCUAUGAGGUCAUACAUCGUCAUAGCACAAAGAAAGAGAAGGUCGAUUCGUUGGCCUAAAAGAAACAACAACAACAAC
#N/A#N/A11446831yn
20
11447896_Pseudoknot 31_dl2007
GGGAACGACUCGAGUAGAGUCGAAAAUACCGAGAAUGCGACUCGGUAAAUAAAACGCACCCUUGGAAACAAGGGAAGUCAUGAUUCGUCGUGACAAAAGAAACAACAACAACAAC
#N/A#N/A11447896yn
21
11449470_ZG pk50 nr 12_father_daughter
GGGAACGACUCGAGUAGAGUCGAAAACCGGAAACGGACAUGACGAUCGCGCGCAUGUCGGGAAACCGUAAACGCGAGGUCCUGUUCGCAGGAUCAAAAGAAACAACAACAACAAC
#N/A#N/A11449470yy
22
11452277_JRpseu0329_JR
GGGAACGACUCGAGUAGAGUCGAAAAGAACGCUGCGGCGAGCAGCAGCCAGAGAAGGCAACACAAUCGCCAUAAAAACGUCGUUUCGACGGCGUAAAAGAAACAACAACAACAAC
#N/A#N/A11452277yy
23
11452301_JRpseu0317_JR
GGGAACGACUCGAGUAGAGUCGAAAAGAAAGCGAAAACGCAACGCCAACGGAAAGGCGAAUUCCGAACAACCAUAAACAUGCAUUCGUGCGUGUAAAAGAAACAACAACAACAAC
#N/A#N/A11452301yy
24
11452305_JRpseu0316_JR
GGGAACGACUCGAGUAGAGUCGAAAAGAAGCGCGGACACAAAAGCACGAGCUCGCCGUGACGCGCAAAGGCGAUAAAGUGCCAUUCGUGGUACUAAAAGAAACAACAACAACAAC
#N/A#N/A11452305yy
25
11452311_JRpseu0313_JR
GGGAACGACUCGAGUAGAGUCGAAAAGAGCACUGAGCAGCGAAAGAAACGCUGCAAGCCGCAGUGCACGGCAAUAAAGUUGCAUUCGUGCGACUAAAAGAAACAACAACAACAAC
#N/A#N/A11452311yy
26
11458731_Astros-eli-mers-mods_Astromon
GGGAACGACUCGAGUAGAGUCGAAAAGGUGGUGGCUGGCUUGUUGCUAGUGGCGCAACUGUUGCCAUGACUGCGCAUGGUUCGUUCGCGAGCCAAAAAGAAACAACAACAACAAC
GGUGGUGGCUGG#N/A11458731yn
27
11459074_Astros-pnote-10_Astromon
GGGAACGACUCGAGUAGAGUCGAAAACGGUGCCAGUAUGGCGUAGCGGCGCGGUACACCGCGCAGCCGAGCUGGAAGUCGUGCUUCGGUACGGCAAAAGAAACAACAACAACAAC
#N/A#N/A11459074yn
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100