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TermAbbreviationRetired synonymsTypeAIRR DocsZenodoGovernanceRestricted useTo DoDefinition
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Adaptive Immune Receptor RepertoireAIRRdefinition - AIRR-CTRUETRUEFALSETRUE
A collection of vertebrate immune receptors whose loci typically undergo RAG-mediated rearrangement, i.e., immunoglobulins and T cell receptors.
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AIRR CommunityAIRR-Cdefinition - AIRR-CTRUETRUETRUEFALSE
The Adaptive Immune Receptor Repertoire Community is a grassroots collaboration for developing and promoting best practices for generating, analyzing, curating, and sharing AIRR-seq data, see [DOI:10.3389/fimmu.2017.01418]. As of 12/2017, AIRR-C became a Committee within The Antibody Society (TAbS) and is therefore also known as "The AIRR Community Committee within The Antibody Society".
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AIRR Community StandardsAIRR-C StandardsAIRR Standardsdefinition - AIRR-CTRUEFALSEFALSETRUE
The collection of all norms, including standards, guidelines, best practices, recommendations and definitions, which have been developed and published by the AIRR Community, in their respective current version.
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AIRR Data CommonsADCdefinition - AIRR-CTRUETRUEFALSETRUE
The network of data repositories, which make AIRR-seq data FAIR by implementing the ADC API, adhering to the MiAIRR metadata standard and provide data in an AIRR Format.
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AIRR Data Commons Application Program InterfaceADC APIdefinition - AIRR-CTRUETRUEFALSETRUE
The standard defining how AIRR-seq data located in a repository can be programmatically searched and retrieved.
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AIRR Data Schemadefinition - AIRR-CTRUEFALSEFALSETRUE
The formal definition of all specified properties of an AIRR-seq study. This includes groupings of properties, relations between properties and the permissible representations of property values.
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AIRR FormatsAIRR Data Representationdefinition - AIRR-CTRUEFALSEFALSETRUE
The collection of definitions of on-disk and/or in-transit representation of the entities specified in the AIRR Data Schema and in MiAIRR.
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AIRR SequencingAIRR-seqdefinition - AIRR-CTRUETRUETRUEFALSE
The experimental observation of an Adaptive Immune Receptor Repertoire by means of nucleic acid sequencing.
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AIRR Community LeadershipAIRR-C Leadershipdefinition - AIRR-CFALSEFALSETRUEFALSE
The group of persons who serve as either members of the AIRR Community Executive SC and/or (Co)-leads of any other AIRR Community WG or SC.
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AntibodyAbdefinition - biologyFALSETRUEFALSEFALSE
A soluble protein consisting of n Ig heavy / Ig light heterotetramers (with n typically being 1, 2 or 5, depending on the isotype) plus the optional J chain (IgM & IgA) and the secretory component (IgA).
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APIabbreviation - ITTRUEFALSEFALSEFALSEApplication Programming Interface
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B cell receptorBCRdefinition - biologyFALSETRUEFALSEFALSE
A protein complex on the cell surface encompassing Ig heavy / Ig light heterotetramers and the associated signal transduction components (e.g., Igα and Igβ).
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CAIRRabbreviation - otherTRUEFALSEFALSEFALSECEDAR AIRR
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CEDARabbreviation - otherTRUEFALSEFALSEFALSECenter for Expanded Data Annotation and Retrieval
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Clonedefinition - multipleTRUETRUEFALSEFALSE
1) [biological definition] A group of B or T cells that are all descended from the same naive ancestal cell and carry the same rearrangements. In B cells, the Ig sequence may vary between members of a Clone due to somatic hypermutation. To indicate this fact, the term "clonal linage" is preferred by some researchers. 2) [informatic defintion] The informatic representation of the biological clone.
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Clonal expansiondefinition - biologyFALSETRUEFALSEFALSEThe proliferation of an individual T or B cell that gives rise to a Clone.
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Clonal lineagedefinition - biologyFALSETRUEFALSEFALSESee Clone.
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Complementarity determining regionCDRdefinition - biologyFALSETRUEFALSEFALSE
The complementarity determining regions of an Ig or TCR are the protein loops that are mainly responsible for the interaction with an antigen. There are three CDRs in total (CDR1-3) of which CDR3 is encoded by the junction of the V(D)J rearrangement.
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Constant regionC regiondefinition - biologyFALSETRUEFALSEFALSE
The constant region of IG or TR genes. For IGH, multiple C regions exist, which encode different isotypes, e.g., IgD, IgG1, IgA2.
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FAIRdefinitions - RDMTRUEFALSEFALSEFALSE
The acronym for "Findable, Accessible, Interoperable, Reusable", a set of principles to facilitate the reuse of research data, defined by Wilkinson et al. (2016).
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Framework regionFWR, FRdefinition - biologyFALSETRUEFALSEFALSE
The framework regions of an Ig or TCR, which generally correspond to the beta strands forming the core of the variable domain.
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HTTPabbreviation - ITTRUEFALSEFALSEFALSEHypertext Transfer Protocol
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ImmunoglobulinIg, IGdefinition - biologyFALSETRUEFALSEFALSE
Can refer to the locus, rearranged gene, transcript, polypeptide or as an umbrella term to BCRs and antibodies. Note that while "Ig" is a general abbreviation, "IG" specifically refers to the nucleic acids that encode any of the Ig chains.
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Intervaldefinition - AIRR-CFALSEFALSETRUEFALSEThe period between two consecutive AIRR Community Meetings.
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JSONabbreviation - ITTRUEFALSEFALSEFALSEJavaScript Object Notation
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MiAIRRdefinition - AIRR-CTRUETRUETRUETRUE
The acronym for “Minimal Information about an Adaptive Immune Receptor Repertoire study”, the AIRR Community-defined set of properties on which information must or should be provided to allow for the meaningful interpretation of the data. MiAIRR was originally specified in [DOI:10.1038/ni.3873] and continues to be further developed in AIRR Community Git repository [https://github.com/airr-community/airr-standards]. It should be noted that the current version of MiAIRR is a complete subset of the AIRR Data Schema definitions.
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Public clonedefinition - biologyFALSETRUEFALSEFALSE
A set of rearrangements from multiple individuals all using the same V and J genes and having high sequence identity in CDR3. Technically they are convergent rearrangements rather than a true clone. Suggestive of functional selection.
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Rearrangementdefinition - multipleTRUETRUEFALSEFALSE
1) [biological definition] The physical combination of V and J or V, D, and J genes into a complete IG or TR. 2) [informatic definition] The representation of a biological rearrangement, which is obtained through sequencing and annotated with features, such as gene calls, from data processing.
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RESTabbreviation - ITTRUEFALSEFALSEFALSERepresentational State Transfer
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Sub-committeeSCdefinition - AIRR-CFALSEFALSETRUEFALSE
A formally established group within the AIRR Community to address continuous or repetitive duties of high organizational relevance to the AIRR Community. Sub-committees consist of one or more (Co)-leaders and additional individuals, all of whom are required to be AIRR Community Members.
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T cell receptorTCRdefinition - biologyFALSETRUEFALSEFALSE
A protein complex on the cell surface encompassing the TCRα/β or TCRγ/δ heterodimers and the CD3 signal transduction components.
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The Antibody SocietyTAbSdefinition - externalFALSEFALSETRUEFALSE
The Antibody Society is an international, non-profit association representing individuals and organizations involved in antibody-related research and development.
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TRdefinition - biologyFALSETRUEFALSEFALSEThe nucleic acids that encode any of the TCR chains.
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TSVabbreviation - ITTRUEFALSEFALSEFALSETab Separated Values
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Unique molecular identifierUMIdefinition - biologyFALSETRUEFALSEFALSE
A stretch of random or semi-random nucleotides used to uniquely label each original molecule input into a PCR reaction. Sequences with the same UMI can be collapsed to allow sequencing error correction and quantification.
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URLabbreviation - ITTRUEFALSEFALSEFALSEUniversal Resource Locator
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V(D)Jdefinition - biologyFALSETRUEFALSEFALSE
The genetic makeup of a rearranged IG or TR. All loci include variable (V) and joining (J) genes; in addition, the IGH, TRB, and TRD loci also include diversity (D) genes.
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YAMLabbreviation - ITTRUEFALSEFALSEFALSEYAML Ain't Markup Language
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Working GroupWGdefinition - AIRR-CFALSEFALSETRUEFALSE
A formally established group within the AIRR Community, which has received a mandate from the General Assembly to work on a specified topic on behalf of the AIRR Community. Participation in working groups is open to all interested individuals, an AIRR Community membership is not required. Working groups are chaired by one or more (Co)-leaders, at least one of which is required to be an AIRR Community Member. Working groups focus on a set of specified goals and will be disbanded when these goals are accomplished.
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Working Group ParticipantWG Participantdefinition - AIRR-CFALSEFALSETRUEFALSEComp. with Govn. re-wording 02/22
An individual who regularly attends WG conference calls, contributes ideas or other information to the WG and takes part in the generation of working group products. Participant status is independent of AIRR Community Membership. The determination of which individuals of a WG are considered to be Participants is made by the WG (Co-)leads in consultation with other Participants of the WG. Subscription to a WG's mailing list is typically not a sufficient criterion to be considered as a Participant.
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AIRR Community MeetingAIRR-C Meetingdefinition - AIRR-CFALSEFALSETRUEFALSE
The official meeting of the AIRR Community at which the General Assembly convenes. These meetings are held approximately every 18 months.
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AIRR Community MemberAIRR-C Memberdefinition - AIRR-CFALSEFALSETRUEFALSE
An individual whose AIRR Community membership application has been approved and has not been terminated and who is not in arrears with his/her annual membership fee.
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Repertoiredefinition - biology
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Repertoiredefinition - IT
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