A | B | C | D | |
---|---|---|---|---|
1 | Date | Presenters | Topic | Notes |
2 | 1/14/2020 | Wei Wang (Genomics Core Facility) | Single-Cell RNA-Seq | Single-Cell Sequencing Technology: RNA-Seq, ATAC-Seq, and Both |
3 | 12/10/2019 | Lance Parsons (LSI Research Computing) | RNA-Seq Analysis | RNA-Seq Overview |
4 | 9/10/2019 | Rebecca Alizzi (Gavis Lab) | Using RNA-seq to uncover a role for Found in neurons (Fne) in promoting space-filling dendrite growth in Drosophila sensory neurons | |
5 | 7/9/2019 | Renxing Liang (Geomicrobiology) | Metagenomic sequencing of ancient DNA after DNA repair | |
6 | 5/14/2019 | Serena Tucci (Akey Lab) | ||
7 | 4/9/2019 | Selina Vattathil (Akey Lab) | Characterizing somatic genetic variation in normal human tissues | |
8 | 3/12/2019 | Ben Rubin (Kocher Lab) | The comparative genomics of sweat bees | |
9 | 12/11/2018 | Kai Wu (Shenk Lab) | A double-edged sword: PDGF receptor alpha (PDGFRα) for human cytomegalovirus infection | |
10 | 11/13/2018 | Mark Wan (Brynildsen Lab) | Using Tn-Seq to investigate conditionally essential genes of E. coli under nitric oxide stress | |
11 | 10/9/2018 | Amir Erez (Donia Lab) | TBA | |
12 | 9/11/2018 | Kai Chen (Levine Lab) | A comprehensive four-dimensional single cell transcriptome analysis of a proto-vertebrate | |
13 | 8/14/2018 | Luisa Pallares (Ayroles Lab) | The fly transcriptome under dietary stress | |
14 | 5/8/2018 | Florian Douam (Ploss Lab) | Bulk and single-cell RNA-seq approaches to evaluate the human immune response in humanized mice | |
15 | 4/10/2018 | Jenna Gaska (Ploss Lab) | Analysis of host responses to hepatitis B and delta viral infections in a micro-scalable hepatic co-culture system | |
16 | 3/13/2018 | Cheng Shi (Murphy Lab) | RNA-seq of C. elegans germline | |
17 | 2/13/2018 | Michel Nofal (Rabinowitz Lab) | Using High Throughput Sequencing to Study Metabolism | |
18 | 1/9/2018 | Sarah Gignoux-Wolfsohn - Pinsky Lab, Rutgers | Evidence for White-Nose Syndrome induced Natural Selection in Northeastern Bat Populations | |
19 | 12/12/2017 | Sarah Budischak - Graham Lab | Feeding immunity: Diet metabarcoding and parasite infection | |
20 | 11/14/2017 | Yingshi Peng and Zach Flamholz (Gavis Lab) | Investigating post-initiation translation control during early Drosophila development using ribosome profiling | |
21 | 7/11/2017 | Anna Posfai (Wingreen Lab) | TBD | |
22 | 6/6/2017 | Chi-Fui Chen (Zakian Lab) | TBD | |
23 | 5/9/2017 | Sophia Li (Gitai Lab) | Regulating ribosome activity by nutrient limitation in E. coli | |
24 | 4/11/2017 | Jesse Donovan (Korennykh Lab) | Capture and sequencing of small RNAs cleaved by stress activated endoribonucleases | |
25 | 3/21/2017 | Sophia Li | RESCHEDULED to May | |
26 | 2/14/2017 | Andrew Bass (Storey Lab) | CANCELLED | |
27 | 1/10/2017 | Maggie Lau (Onstott Lab) | TBD | |
28 | 12/13/2016 | Sarah Gignoux-Wolfsohn (Pinksky Lab @ Rutgers) | TBD | |
29 | 11/8/2016 | Sampriti Mukherjee (Bassler Lab) | TBD | |
30 | 10/11/2016 | Chandra Theesfeld (Troyanskaya Lab) | ATAC-Seq | |
31 | 8/9/2016 | Sudarshan Chari (Ayroles Lab) | TBD | |
32 | 7/12/2016 | Darcy McRose (Morel Lab) | Exploring Alternative Nitrogenase Diversity with Genome Mining and PacBio Amplicon Sequencing | |
33 | 6/14/2016 | Jindong Zan (Donia Lab) | TBD | |
34 | 5/10/2016 | Kelsi Lindblad (Landweber Lab) | TBD | |
35 | 4/12/2016 | Talya Yerlici (Landweber Lab) | Circle-Seq | |
36 | 3/8/2016 | Brynildsen Lab | TBD | |
37 | 2/9/2016 | Ben Rubin (Kocher Lab) | The impact of social evolution on the genomes of bees and their endosymbionts | |
38 | 12/8/2015 | Jenna Gaska | Impact of species-specific transcriptomic responses on restriction of hepatotropic viruses | |
39 | 11/10/2015 | Katie Digianantonio (Hecht Lab) | How do de novo designed proteins function in living cells? | |
40 | 10/13/2015 | Shelby Blythe (Wieschaus Lab) | Measuring Changes in Chromatin Accessibility Over Time with Single-Embryo ATAC-seq | |
41 | 9/8/2015 | Greg Ducker and Raphael Morscher (Rabionowitz Lab) | RNA-Seq of CRISPR Knockouts | |
42 | 8/11/2015 | Kai Wu (Shenk Lab) | Essential host factors for human cytomegalovirus infection using CRISPR/Cas9 library screening | |
43 | 7/14/2015 | Lance Parsons | Open QA Session | |
44 | 3/10/2015 | Jesse Donovan (Korennykh Lab) | Exploring innate immunity by RNA-seq | |
45 | 2/10/2015 | Jonathan Richards and Mitchell Vollger (QCB301 students) | TBD | |
46 | 1/13/2015 | Chi-Fu Chen (Zakian Lab) | Study the budding yeast Pif1 DNA helicase by ChIP-seq | |
47 | 12/9/2014 | Kathrin Froehlich (Gitai Lab) | RNA-Seq work on DNA-damage responses in Caulobacter | |
48 | 11/11/2014 | Irene Ojini (Gammie Lab) | Drug Discovery and Chemoresistance: Unlocking the Potential of Yeast in Cancer Pharmacogenomics | |
49 | 10/14/2014 | Clair Han | RNA-Seq Normalization | |
50 | 9/9/2014 | David Robinson - Storey Lab | subSeq: Determining appropriate sequencing depth through efficient read subsampling | https://rpubs.com/dgrtwo/subSeq |
51 | 8/12/2014 | Dan Grimes / Jess Williams - Burdine Lab | TBD | |
52 | 5/13/2014 | Xiao Chen (Landweber Lab) | Combination of PacBio and Illumina sequencing of Oxytricha's highly scrambled and complex germline genome | |
53 | 4/8/2014 | Yuri Pritykin - Singh Lab | piRNAs (collaboration with Schupbach lab) | |
54 | 3/11/2014 | Cara Magnabosco - Onstott Lab | Metagenomics in the deep terrestrial subsurface | /site/princetonhtseq/meetings/2014-03-11-metagenomics-in-the-deep-terrestrial-subsurface |
55 | 2/11/2014 | Sebastian Pott and Tess Jeffers (Lieb Lab) | TBD | |
56 | 12/10/2013 | Wieschaus Lab | TBD | |
57 | 11/12/2013 | Amanda Crocker (Murthy Lab) | TBD | |
58 | 10/8/2013 | Bridgett vonHoldt | Ecological epigenomics (methylation studies) | |
59 | 8/13/2013 | Abigail Trarbach - Rose Lab | TBA | |
60 | 7/9/2013 | Eric Klein (Gitai Lab) | Sequencing the genome of the uropathogenic E. coli strain J96 | |
61 | 6/11/2013 | Chi-Fu Chen (Zakian Lab) - Rescheduled from February | Effects of PIF1 in Maintaining Yeast Mitochondrial DNA | |
62 | 5/14/2013 | Dave Corney (Coller Lab) | alternative polyadenylation in proliferating versus quiescent fibroblasts | |
63 | 4/9/2013 | Leslie Beh (Landweber Lab) | Genome-wide analysis of nucleosome positioning in Oxytricha trifallax: a single-celled eukaryote with 16,000 tiny chromosomes | |
64 | 3/12/2013 | Kaletsky and Landis (Murphy Lab) | Tissue-specific gene expression analysis in C. elegans using RNA-seq | |
65 | 2/12/2013 | Chi-Fu Chen (Zakian Lab) | EFFECTS OF PIF1 IN MAINTAINING YEAST MITOCHONDRIAL DNA | |
66 | 1/22/2013 | Molly Schumer and Matthew Aardema (Andolfatto Lab) | TBD | |
67 | 12/11/2012 | Dave Robinson (Storey Lab) | Determining Optimal Experimental Design and Read Depth for Next-Generation Sequencing | |
68 | 11/13/2012 | Greg Lang and Patrick Gibney (Botstein Lab) | Lang - pipeline for identifying mutations / Gibney - de novo assembly | |
69 | 10/9/2012 | Troyanskaya Lab - Jonathan Goya | Integrated -omic profiles of murine tissue specificity | |
70 | 9/11/2012 | Julia van Kessel - Bassler Lab | Probing quorum-sensing regulation with high-throughput sequencing | |
71 | 7/17/2012 | Frank Labert - Kruglyak Lab | Studying genetic variation in protein translation by sequencing ribosomal footprints | |
72 | 6/12/2012 | April Williams (Llinas Lab) | TBD | |
73 | 5/8/2012 | TBD | TBD | |
74 | 4/10/2012 | Attilio Pane (Schupbach Lab) and Yrui Pritykin (Singh Lab) | Drosophila small RNA | |
75 | 3/13/2012 | Orkide Koyuncu | Viral RNA-Seq | |
76 | 2/14/2012 | Jasdave (Raja) Chahal (Flint Lab) | John Matese, Lance Parsons | Virus Resequencing | Bioinformatics Tools | /site/princetonhtseq/meetings/2012-02-14-ion-torrent |
77 | 1/10/2012 | Wei Wang | Varieties of RNA-Seq Methods: a Field Guide | https://www.princeton.edu/genomics/sequencing/instructions/RNA-Seq-FieldGuide-2012.pdf |
78 | 12/13/2011 | Alison Gammie | DNA mismatch repair, mutation, and cancer | |
79 | 11/8/2011 | Noyes Lab | Zinc Fingers | |
80 | 10/11/2011 | Elizabeth Johnson | Detecting alternative isoform expression in proliferating and quiescent fibroblasts using RNA-seq | |
81 | 9/13/2011 | John Bracht and other members of the Landweber Lab | Two genomes in one cell: exploring the scrambled germline of Oxytricha | wuid:gx:69e1edf786df1ef3 |
82 | 8/9/2011 | Peter Freddolino | Unravelling unknown mechanisms of action for antibiotics and toxic peptides | wuid:gx:ef65e9de16fb2ba |
83 | 7/12/2011 | David Robinson | Testing transcriptome assembly software by simulating RNA-Seq data | https://sites.google.com/site/princetonhtseq/meetings/2011-07-12-rna-seq-simulation |
84 | 6/14/2011 | Greg Lang | Biology of Genomes Meeting | wuid:gx:4f5eb978de5f6022 |
85 | 5/10/2011 | Lance Parsons | Galaxy | wuid:gx:63108d31e293efa3 |
86 | 4/12/2011 | Greg Lang and Patrick Gibney | Yeast Population Sequencing | wuid:gx:2e5ed0f79cf7227 |
87 | 2/8/2011 | Zia Kahn | Assembly | wuid:gx:5a57990c1b73065a |
88 | 1/11/2011 | Barbara Dul and Maja Klosinska | Identifying Supressors and Bar Code Screening | wuid:gx:d0f642b988bde7d |
89 | 12/14/2010 | Peter Andolfatto | Genome Assembly and Genotyping | wuid:gx:7c9558d5b3d7e2f3 |
90 | 11/9/2010 | Moriah Szpara | Viral Genome Assembly | wuid:gx:1ea906bdd3cb3620 |
91 | 10/12/2010 | Amy Caudy | Drosophila Heterochromatin | |
92 | 9/2/2010 | Ben Garcia | ||
93 | 8/19/2010 | Dr. Guna Rajagopal | CINJ | wuid:gx:773912545def96b6 |
94 | 8/5/2010 | Lance Parsons | Quality Control | wuid:gx:1df425e2930bcc27 |
95 | 7/22/2010 | Brian Gelfand and Lance Parsons | RNA-Seq, MGED, FastQC | wuid:gx:509b33f2b00244f8 |
96 | 7/8/2010 | David Sidote | Waksman Genomics Lab at Rutgers | wuid:gx:49fb6536218f74a8 |
97 | 6/24/2010 | Peter Freddilino and Troels Marstrand | IPOD and RNA-Seq simulation | wuid:gx:3171ba830b9403d4 |
98 | 6/10/2010 | Lance Parsons and John Matese | FASTQ format and HTSEQ | wuid:gx:4a09c008cfcf6164 |
99 | 5/27/2010 | Ian Ehrenreich | Nextera tagmentation | wuid:gx:683a7fe29eb34ee2 |
100 | 5/13/2010 | Various | CINJ Seminar | https://cinjweb.umdnj.edu/nextgen/high-throughput-sequencing-seminar-at-cinj |