ABCD
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DatePresentersTopicNotes
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1/14/2020Wei Wang (Genomics Core Facility)Single-Cell RNA-Seq
Single-Cell Sequencing Technology: RNA-Seq, ATAC-Seq, and Both
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12/10/2019
Lance Parsons (LSI Research Computing)
RNA-Seq AnalysisRNA-Seq Overview
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9/10/2019Rebecca Alizzi (Gavis Lab)
Using RNA-seq to uncover a role for Found in neurons (Fne) in promoting space-filling dendrite growth in Drosophila sensory neurons
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7/9/2019Renxing Liang (Geomicrobiology)Metagenomic sequencing of ancient DNA after DNA repair
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5/14/2019Serena Tucci (Akey Lab)
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4/9/2019Selina Vattathil (Akey Lab)Characterizing somatic genetic variation in normal human tissues
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3/12/2019Ben Rubin (Kocher Lab)The comparative genomics of sweat bees
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12/11/2018Kai Wu (Shenk Lab)A double-edged sword: PDGF receptor alpha (PDGFRα) for human cytomegalovirus infection
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11/13/2018Mark Wan (Brynildsen Lab)Using Tn-Seq to investigate conditionally essential genes of E. coli under nitric oxide stress
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10/9/2018Amir Erez (Donia Lab)TBA
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9/11/2018Kai Chen (Levine Lab)A comprehensive four-dimensional single cell transcriptome analysis of a proto-vertebrate
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8/14/2018Luisa Pallares (Ayroles Lab)The fly transcriptome under dietary stress
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5/8/2018Florian Douam (Ploss Lab)Bulk and single-cell RNA-seq approaches to evaluate the human immune response in humanized mice
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4/10/2018Jenna Gaska (Ploss Lab)Analysis of host responses to hepatitis B and delta viral infections in a micro-scalable hepatic co-culture system
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3/13/2018Cheng Shi (Murphy Lab)RNA-seq of C. elegans germline
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2/13/2018Michel Nofal (Rabinowitz Lab)Using High Throughput Sequencing to Study Metabolism
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1/9/2018Sarah Gignoux-Wolfsohn - Pinsky Lab, RutgersEvidence for White-Nose Syndrome induced Natural Selection in Northeastern Bat Populations
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12/12/2017Sarah Budischak - Graham LabFeeding immunity: Diet metabarcoding and parasite infection
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11/14/2017Yingshi Peng and Zach Flamholz (Gavis Lab)Investigating post-initiation translation control during early Drosophila development using ribosome profiling
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7/11/2017Anna Posfai (Wingreen Lab)TBD
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6/6/2017Chi-Fui Chen (Zakian Lab)TBD
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5/9/2017Sophia Li (Gitai Lab)Regulating ribosome activity by nutrient limitation in E. coli
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4/11/2017Jesse Donovan (Korennykh Lab)Capture and sequencing of small RNAs cleaved by stress activated endoribonucleases
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3/21/2017Sophia LiRESCHEDULED to May
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2/14/2017Andrew Bass (Storey Lab)CANCELLED
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1/10/2017Maggie Lau (Onstott Lab)TBD
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12/13/2016Sarah Gignoux-Wolfsohn (Pinksky Lab @ Rutgers)TBD
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11/8/2016Sampriti Mukherjee (Bassler Lab)TBD
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10/11/2016Chandra Theesfeld (Troyanskaya Lab)ATAC-Seq
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8/9/2016Sudarshan Chari (Ayroles Lab)TBD
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7/12/2016Darcy McRose (Morel Lab)Exploring Alternative Nitrogenase Diversity with Genome Mining and PacBio Amplicon Sequencing
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6/14/2016Jindong Zan (Donia Lab)TBD
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5/10/2016Kelsi Lindblad (Landweber Lab)TBD
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4/12/2016Talya Yerlici (Landweber Lab)Circle-Seq
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3/8/2016Brynildsen LabTBD
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2/9/2016Ben Rubin (Kocher Lab)The impact of social evolution on the genomes of bees and their endosymbionts
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12/8/2015Jenna GaskaImpact of species-specific transcriptomic responses on restriction of hepatotropic viruses
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11/10/2015Katie Digianantonio (Hecht Lab)How do de novo designed proteins function in living cells?
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10/13/2015Shelby Blythe (Wieschaus Lab)Measuring Changes in Chromatin Accessibility Over Time with Single-Embryo ATAC-seq
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9/8/2015Greg Ducker and Raphael Morscher (Rabionowitz Lab)RNA-Seq of CRISPR Knockouts
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8/11/2015Kai Wu (Shenk Lab)Essential host factors for human cytomegalovirus infection using CRISPR/Cas9 library screening
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7/14/2015Lance ParsonsOpen QA Session
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3/10/2015Jesse Donovan (Korennykh Lab)Exploring innate immunity by RNA-seq
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2/10/2015Jonathan Richards and Mitchell Vollger (QCB301 students) TBD
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1/13/2015Chi-Fu Chen (Zakian Lab)Study the budding yeast Pif1 DNA helicase by ChIP-seq
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12/9/2014Kathrin Froehlich (Gitai Lab)RNA-Seq work on DNA-damage responses in Caulobacter
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11/11/2014Irene Ojini (Gammie Lab)Drug Discovery and Chemoresistance: Unlocking the Potential of Yeast in Cancer Pharmacogenomics
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10/14/2014Clair HanRNA-Seq Normalization
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9/9/2014David Robinson - Storey LabsubSeq: Determining appropriate sequencing depth through efficient read subsamplinghttps://rpubs.com/dgrtwo/subSeq
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8/12/2014Dan Grimes / Jess Williams - Burdine LabTBD
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5/13/2014Xiao Chen (Landweber Lab)Combination of PacBio and Illumina sequencing of Oxytricha's highly scrambled and complex germline genome
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4/8/2014Yuri Pritykin - Singh LabpiRNAs (collaboration with Schupbach lab)
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3/11/2014Cara Magnabosco - Onstott LabMetagenomics in the deep terrestrial subsurface/site/princetonhtseq/meetings/2014-03-11-metagenomics-in-the-deep-terrestrial-subsurface
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2/11/2014Sebastian Pott and Tess Jeffers (Lieb Lab)TBD
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12/10/2013Wieschaus LabTBD
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11/12/2013Amanda Crocker (Murthy Lab)TBD
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10/8/2013Bridgett vonHoldtEcological epigenomics (methylation studies)
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8/13/2013Abigail Trarbach - Rose LabTBA
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7/9/2013Eric Klein (Gitai Lab)Sequencing the genome of the uropathogenic E. coli strain J96
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6/11/2013Chi-Fu Chen (Zakian Lab) - Rescheduled from FebruaryEffects of PIF1 in Maintaining Yeast Mitochondrial DNA
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5/14/2013Dave Corney (Coller Lab)alternative polyadenylation in proliferating versus quiescent fibroblasts
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4/9/2013Leslie Beh (Landweber Lab)Genome-wide analysis of nucleosome positioning in Oxytricha trifallax: a single-celled eukaryote with 16,000 tiny chromosomes
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3/12/2013Kaletsky and Landis (Murphy Lab)Tissue-specific gene expression analysis in C. elegans using RNA-seq
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2/12/2013 Chi-Fu Chen (Zakian Lab)EFFECTS OF PIF1 IN MAINTAINING YEAST MITOCHONDRIAL DNA
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1/22/2013Molly Schumer and Matthew Aardema (Andolfatto Lab)TBD
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12/11/2012Dave Robinson (Storey Lab)Determining Optimal Experimental Design and Read Depth for Next-Generation Sequencing
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11/13/2012Greg Lang and Patrick Gibney (Botstein Lab)Lang - pipeline for identifying mutations / Gibney - de novo assembly
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10/9/2012Troyanskaya Lab - Jonathan GoyaIntegrated -omic profiles of murine tissue specificity
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9/11/2012Julia van Kessel - Bassler LabProbing quorum-sensing regulation with high-throughput sequencing
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7/17/2012Frank Labert - Kruglyak LabStudying genetic variation in protein translation by sequencing ribosomal footprints
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6/12/2012April Williams (Llinas Lab)TBD
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5/8/2012TBDTBD
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4/10/2012Attilio Pane (Schupbach Lab) and Yrui Pritykin (Singh Lab)Drosophila small RNA
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3/13/2012Orkide KoyuncuViral RNA-Seq
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2/14/2012Jasdave (Raja) Chahal (Flint Lab) | John Matese, Lance ParsonsVirus Resequencing | Bioinformatics Tools/site/princetonhtseq/meetings/2012-02-14-ion-torrent
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1/10/2012Wei WangVarieties of RNA-Seq Methods: a Field Guidehttps://www.princeton.edu/genomics/sequencing/instructions/RNA-Seq-FieldGuide-2012.pdf
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12/13/2011Alison GammieDNA mismatch repair, mutation, and cancer
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11/8/2011Noyes LabZinc Fingers
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10/11/2011Elizabeth JohnsonDetecting alternative isoform expression in proliferating and quiescent fibroblasts using RNA-seq
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9/13/2011John Bracht and other members of the Landweber LabTwo genomes in one cell: exploring the scrambled germline of Oxytrichawuid:gx:69e1edf786df1ef3
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8/9/2011Peter FreddolinoUnravelling unknown mechanisms of action for antibiotics and toxic peptideswuid:gx:ef65e9de16fb2ba
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7/12/2011David RobinsonTesting transcriptome assembly software by simulating RNA-Seq datahttps://sites.google.com/site/princetonhtseq/meetings/2011-07-12-rna-seq-simulation
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6/14/2011Greg LangBiology of Genomes Meetingwuid:gx:4f5eb978de5f6022
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5/10/2011Lance ParsonsGalaxywuid:gx:63108d31e293efa3
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4/12/2011Greg Lang and Patrick GibneyYeast Population Sequencingwuid:gx:2e5ed0f79cf7227
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2/8/2011Zia KahnAssemblywuid:gx:5a57990c1b73065a
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1/11/2011Barbara Dul and Maja KlosinskaIdentifying Supressors and Bar Code Screeningwuid:gx:d0f642b988bde7d
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12/14/2010Peter AndolfattoGenome Assembly and Genotypingwuid:gx:7c9558d5b3d7e2f3
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11/9/2010Moriah SzparaViral Genome Assemblywuid:gx:1ea906bdd3cb3620
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10/12/2010Amy CaudyDrosophila Heterochromatin
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9/2/2010Ben Garcia
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8/19/2010Dr. Guna RajagopalCINJwuid:gx:773912545def96b6
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8/5/2010Lance ParsonsQuality Controlwuid:gx:1df425e2930bcc27
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7/22/2010Brian Gelfand and Lance ParsonsRNA-Seq, MGED, FastQCwuid:gx:509b33f2b00244f8
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7/8/2010David SidoteWaksman Genomics Lab at Rutgerswuid:gx:49fb6536218f74a8
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6/24/2010Peter Freddilino and Troels MarstrandIPOD and RNA-Seq simulationwuid:gx:3171ba830b9403d4
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6/10/2010Lance Parsons and John MateseFASTQ format and HTSEQwuid:gx:4a09c008cfcf6164
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5/27/2010Ian EhrenreichNextera tagmentationwuid:gx:683a7fe29eb34ee2
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5/13/2010VariousCINJ Seminarhttps://cinjweb.umdnj.edu/nextgen/high-throughput-sequencing-seminar-at-cinj