Gonzalez2018_sample_info_for_DESeq2.xlsx

	A	B	C	D	E	F	G	H	I	J	K
1	Gonzalez et al 2018 sample manifest for “Sex differences in the late first trimester human placenta transcriptome.” Biol Sex Differ. 2018 Jan 15. 9:4. [PMID: 29335024]. Bulk total RNA-seq data was deposited at NCBI GEO accession "GSE109082". That leads to this link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE109082
2	Download the supplementary file: "GSE109082_genecounts.txt.gz"
3	Sample manifest
4	sexdiffs.39villi.FINAL	sexdiffs.drop6out.42villi.OLD	StudyID	NewLabel	Sex	Conception	Karyotype	sexdiffs.week11	sexdiffs.week13	gestation.group	Tania notes 2024
5	OK	OK	70688	F01	F	Spontaneous	Normal	OK	drop	WEEK11	Dropped in Bora Lee's 2019 total RNA-seq for the infertility study, but included for Gonzalez et al 2018 sex differences.
6	OK	OK	70706	F02	F	Spontaneous	Normal	OK	drop	WEEK11
7	OK	OK	70714	F03	F	Spontaneous	Normal	drop	drop	drop
8	OK	OK	70729	F04	F	Spontaneous	Normal	drop	drop	drop
9	OK	OK	70792	F05	F	Spontaneous	Normal	drop	drop	drop
10	OK	OK	70818	F06	F	Spontaneous	Normal	drop	OK	WEEK13
11	OK	OK	71022	F07	F	Spontaneous	Normal	OK	drop	WEEK11
12	OK	OK	71026	F08	F	Spontaneous	Normal	drop	drop	drop
13	OK	OK	71098	F09	F	Spontaneous	Normal	drop	OK	WEEK13
14	OK	OK	71138	F10	F	Spontaneous	Normal	OK	drop	WEEK11
15	OK	OK	71141	F11	F	Spontaneous	Normal	drop	drop	drop
16	OK	OK	71197	F12	F	Spontaneous	Normal	OK	drop	WEEK11
17	OK	OK	71379	F13	F	Spontaneous	Normal	drop	OK	WEEK13
18	OK	OK	71625	F14	F	Spontaneous	Normal	drop	drop	drop
19	OK	OK	71990	F15	F	Spontaneous	Normal	drop	OK	WEEK13
20	OK	OK	72020	F16	F	Spontaneous	Normal	drop	drop	drop
21	OK	OK	72034	F17	F	Spontaneous	Normal	drop	drop	drop
22	drop	OK	70742	F18	F	Spontaneous	Abnormal	drop	drop	drop	Dropped during revision
23	drop	OK	70940	F19	F	Spontaneous	Abnormal	drop	drop	drop	Dropped during revision
24	OK	OK	70192	M01	M	Spontaneous	Normal	drop	OK	WEEK13
25	OK	OK	70273	M02	M	Spontaneous	Normal	OK	drop	WEEK11
26	OK	OK	70747	M03	M	Spontaneous	Normal	OK	drop	WEEK11
27	OK	OK	70780	M04	M	Spontaneous	Normal	drop	OK	WEEK13
28	OK	OK	70814	M05	M	Spontaneous	Normal	drop	drop	drop
29	OK	OK	70819	M06	M	Spontaneous	Normal	OK	drop	WEEK11
30	OK	OK	70821	M07	M	Spontaneous	Normal	drop	drop	drop
31	OK	OK	70887	M08	M	Spontaneous	Normal	OK	drop	WEEK11
32	OK	OK	70969	M09	M	Spontaneous	Normal	OK	drop	WEEK11
33	OK	OK	70971	M10	M	Spontaneous	Normal	OK	drop	WEEK11
34	OK	OK	71045	M11	M	Spontaneous	Normal	drop	drop	drop
35	OK	OK	71266	M12	M	Spontaneous	Normal	drop	drop	drop
36	OK	OK	71313	M13	M	Spontaneous	Normal	OK	drop	WEEK11
37	OK	OK	71427	M14	M	Spontaneous	Normal	drop	drop	drop	Not included in the later SMAART cohort for some reason. It could have been added.
38	OK	OK	71466	M15	M	Spontaneous	Normal	OK	drop	WEEK11
39	OK	OK	71523	M16	M	Spontaneous	Normal	drop	drop	drop
40	OK	OK	71532	M17	M	Spontaneous	Normal	drop	drop	drop
41	OK	OK	71536	M18	M	Spontaneous	Normal	drop	OK	WEEK13
42	OK	OK	71623	M19	M	Spontaneous	Normal	drop	drop	drop
43	OK	OK	71922	M20	M	Spontaneous	Normal	drop	OK	WEEK13
44	OK	OK	72160	M21	M	Spontaneous	Normal	drop	drop	drop
45	OK	OK	72175	M22	M	Spontaneous	Normal	OK	drop	WEEK11
46	drop	OK	70241	M23	M	Spontaneous	Abnormal	drop	drop	drop	Dropped during revision
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