prostate_v1.3_DRAFT

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1	Anatomical Structures, Cell Types and Biomarkers Table for Prostate
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3	Author Name(s):	Douglas Strand; Chad Vezina
4	Author ORCID(s):	0000-0002-0746-927X; 0000-0001-7058-5399
5	Reviewer(s):	Ellen M. Quardokus
6	Reviewer ORCID(s):	0000-0001-7655-4833
7	General Publication(s):	DOI: 10.1002/path.5751
8	Data DOI:
9	Date:	revise for October 1, 2024
10	Version Number:	v1.2
11	AS/1	AS/1/LABEL	AS/1/ID	AS/2	AS/2/LABEL	AS/2/ID	AS/3	AS/3/LABEL	AS/3/ID	AS/4	AS/4/LABEL	AS/4/ID	CT/1	CT/1/LABEL	CT/1/ID	CT/1/NOTES	CT/2	CT/2/LABEL	CT/2/ID	CT/2/NOTES	BGene/1	BGene/1/LABEL	BGene/1/ID	BGene/2	BGene/2/LABEL	BGene/2/ID	BGene/3	BGene/3/LABEL	BGene/3/ID	FTU/1	FTU/1/LABEL	FTU/1/ID	REF/1	REF/1/ID	REF/1/NOTES	REF/2	REF/2/ID	REF/2/NOTES	REF/3	REF/3/ID	REF/3/NOTES	REF/4	REF/4/ID	REF/4/NOTES	REF/5	REF/5/ID	REF/5/NOTES	REF/6	REF/6/ID	REF/6/NOTES
12	prostate gland	prostate gland	UBERON:0002367	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	prostate epithelium	prostate epithelium	UBERON:0000428				luminal epithelia	luminal cell of prostate epithelium	CL:0002340						MSMB	microseminoprotein beta	HGNC:7372	KLK3	kallikrein related peptidase 3	HGNC:6364	ACPP	acid phosphatase 3	HGNC:125	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	doi:10.1002/path.5751	doi:10.1002/path.5751
13	prostate gland	prostate gland	UBERON:0002367	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	prostate epithelium	prostate epithelium	UBERON:0000428				basal epithelia	basal cell of prostate epithelium	CL:0002341						KRT5	keratin 5	HGNC:6442	KRT14	keratin 14	HGNC:6416	S100A2	S100 calcium binding protein A2	HGNC:10492	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	doi:10.1002/path.5751	doi:10.1002/path.5751
14	prostate gland	prostate gland	UBERON:0002367	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	prostate epithelium	prostate epithelium	UBERON:0000428				neuroendocrine epithelia	prostate neuroendocrine cell	CL:0017002						CHGA	chromogranin A	HGNC:1929	GRP	gastrin releasing peptide	HGNC:4605	SCG2	secretogranin II	HGNC:10575	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	doi:10.1002/path.5751	doi:10.1002/path.5751
15	prostate gland	prostate gland	UBERON:0002367	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	prostate epithelium	prostate epithelium	UBERON:0000428				ionocyte	ionocyte	CL:0005006		ionocyte epithelia	ionocyte cell of prostate			FOXI1	Forkhead box I1	HGNC:3815	ATP6V0A4	ATPase H+ transporting V0 subunit a4	HGNC:866	DGKI	diacylglycerol kinase iota	HGNC:2855	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	doi:10.1002/path.5751	doi:10.1002/path.5751
16	prostate gland	prostate gland	UBERON:0002367	Prostate Glandular Acinus	prostate gland smooth muscle	UBERON:0004243	prostate stroma	prostate gland stroma	UBERON:0004184				prostate smooth muscle	smooth muscle cell of prostate	CL:1000487						DES	desmin	HGNC:2770	ACTG2	actin gamma 2, smooth muscle	HGNC:145	ACTA2	actin alpha 2, smooth muscle	HGNC:130	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	doi:10.1002/path.5751	doi:10.1002/path.5751
17	prostate gland	prostate gland	UBERON:0002367	Prostate Glandular Acinus	subepithelial connective tissue of prostatic gland	UBERON:0015131	prostate stroma	prostate gland stroma	UBERON:0004184				periepithelial fibroblast of prostate	fibroblast of subepithelial connective tissue of prostatic gland	CL:1000301	also called periepithelial fibroblast					APOD	apolipoprotein D	HGNC:612	PTGDS	prostaglandin D2 synthase	HGNC:9592	DCN	decorin	HGNC:2705	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	doi:10.1002/path.5751	doi:10.1002/path.5751
18	prostate gland	prostate gland	UBERON:0002367	Prostate Glandular Acinus	subepithelial connective tissue of prostatic gland	UBERON:0015131	prostate stroma	prostate gland stroma	UBERON:0004184				interstitial fibroblast	fibroblast of connective tissue of prostate	CL:1000299	similar to major interstitial fibroblasts of bladder, ureter, seminal vesicle and vas deferens					C7	complement C7	HGNC:1346	MFAP4	microfibril associated protein 4	HGNC:7035	DCN	decorin	HGNC:2705	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	doi:10.1002/path.5751	doi:10.1002/path.5751
19	prostate gland	prostate gland	UBERON:0002367	vascular system	blood vasculature	UBERON:0004537	blood vessel	blood vessel	UBERON:0001981	blood vessel endothelium	blood vessel endothelium	UBERON:0004638	microvascular endothelial cell	prostate gland microvascular endothelial cell	CL:2000059		endothelial cell of artery	endothelial cell of artery	CL:1000413		GJA4	gap junction protein alpha 4	HGNC:4278	IGFBP3	insulin growth factor binding protein 3	HGNC:5472	PECAM1	platelet and endothelial cell adhesion molecule 1	HGNC:8823	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	doi:10.1002/path.5751	doi:10.1002/path.5751
20	prostate gland	prostate gland	UBERON:0002367	vascular system	blood vasculature	UBERON:0004537	blood vessel	blood vessel	UBERON:0001981	blood vessel endothelium	blood vessel endothelium	UBERON:0004638	microvascular endothelial cell	prostate gland microvascular endothelial cell	CL:2000059		capillary endothelial cell	capillary endothelial cell	CL:0002144		GJA1	gap junction protein alpha 1	HGNC:4274	CA4	carbonic anhydrase 4	HGNC:1375	PECAM1	platelet and endothelial cell adhesion molecule 1	HGNC:8823	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	doi:10.1002/path.5751	doi:10.1002/path.5751
21	prostate gland	prostate gland	UBERON:0002367	vascular system	blood vasculature	UBERON:0004537	blood vessel	blood vessel	UBERON:0001981	blood vessel endothelium	blood vessel endothelium	UBERON:0004638	microvascular endothelial cell	prostate gland microvascular endothelial cell	CL:2000059		vein endothelial cell	vein endothelial cell	CL:0002543		SELP	selectin P	HGNC:10721	CSF3	colony stimulating factor 3	HGNC:2438	PECAM1	platelet and endothelial cell adhesion molecule 1	HGNC:8823	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	doi:10.1002/path.5751	doi:10.1002/path.5751
22	prostate gland	prostate gland	UBERON:0002367	lymph vasculature	lymph vasculature	UBERON:0004536	lymph vessel	lymphatic vessel	UBERON:0001473				endothelial cell of lymphatic vessel	endothelial cell of lymphatic vessel	CL:0002138		lymph node lymphatic vessel endothelial cell	lymph node lymphatic vessel endothelial cell	CL:0009115		LYVE1	lymphatic vessel endothelial hyaluronan receptor 1	HGNC:14687	FLT4	fms related receptor tyrosine kinase 4	HGNC:3767	PECAM1	platelet and endothelial cell adhesion molecule 1	HGNC:8823	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	doi:10.1002/path.5751	doi:10.1002/path.5751
23	prostate gland	prostate gland	UBERON:0002367	vascular system	vascular system	UBERON:0007798	blood vessel	blood vessel	UBERON:0001981	vascular smooth muscle	blood vessel smooth muscle	UBERON:0004237	vascular associated smooth muscle cell	vascular associated smooth muscle cell	CL:0000359						ACTA2	actin alpha 2, smooth muscle	HGNC:130	MCAM	melanoma cell adhesion molecule	HGNC:6934	CD36	CD36 molecule	HGNC:1663	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	doi:10.1002/path.5751	doi:10.1002/path.5751
24	prostate gland	prostate gland	UBERON:0002367	vascular system	vascular system	UBERON:0007798	blood vessel	blood vessel	UBERON:0001981				perictye	pericyte	CL:0000669						ACTA2	actin alpha 2, smooth muscle	HGNC:130	NDUFA4L2	NDUFA4 mitochondrial complex associated like 2	HGNC:29836	GJA4	gap junction protein alpha 4	HGNC:4278	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	doi:10.1002/path.5751	doi:10.1002/path.5751
25	prostate gland	prostate gland	UBERON:0002367	peripheral nervous system	peripheral nervous system	UBERON:0000010	peripheral nervous system	peripheral nervous system	UBERON:0000010				Schwann cell	Schwann cell	CL:0002573						CDH19	cadherin 19	HGNC:1758	NRXN1	neurexin	HGNC:8008	DCN	decorin	HGNC:2705	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	doi:10.1002/path.5751	doi:10.1002/path.5751
26	prostate gland	prostate gland	UBERON:0002367	prostate gland stroma	prostate gland stroma	UBERON:0004184	peripheral nervous system	peripheral nervous system	UBERON:0000010	peripheral nervous system	peripheral nervous system	UBERON:0000010	endoneurial fibroblast	endoneurial fibroblast	NEED REQUEST						NGFR	nerve growth factor receptor	HGNC:7809	CXCL14	C-X-C motif chemoline ligand 14	HGNC:10640	MFAP5	microfibril associated protein 5	HGNC:29673	Prostate Glandular Acinus	Prostate Glandular Acinus	UBERON:0004179	doi:10.1002/path.5751	doi:10.1002/path.5751
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