ABCDEFGH
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Pathogen Genomics Templates versionDH VersionRelease DateTemplate NameTemplate Version
x.y.z		x changes (field)y changes (values/IDs)z changes (defs/formats/examples)
2
1.3.12022-07-05
3
CanCOGeN (SC2)1.0.0
4
DEXA (One Health)1.0.0
5
GISAID (SC2)1.0.0
6
GRDI1.0.0
7
Monkeypox1.0.0
8
Monkeypox-international1.0.0
9
PHA4GE (SC2)1.0.0
10
11
1.3.22022-07-13
12
CanCOGeN (SC2)1.0.0
13
DEXA (One Health)1.0.0
14
GISAID (SC2)1.0.0
15
GRDI1.0.0
16
Monkeypox1.1.0added anatomical parts
17
Monkeypox-international1.1.0added anatomical parts
18
PHA4GE (SC2)1.0.0
19
20
1.3.32022-07-20
21
CanCOGeN (SC2)1.0.0
22
DEXA (One Health)1.0.0
23
GISAID (SC2)1.0.0
24
GRDI1.0.0
25
Monkeypox2.1.1Major changes: new fields added (Sample collection, Host information, Host exposure/vaccination/reinfection information, Sequencing,Bioinformatics); exports updated; recommended status changed for some fieldsnew pick lists added aligned to WHO and PHAC case report formsdefinitions added, examples updated
26
Monkeypox-international2.1.1Major changes: new fields added (Sample collection, Host information, Host exposure/vaccination/reinfection information, Sequencing,Bioinformatics); exports updated; recommended status changed for some fieldsnew pick lists added aligned with WHO and PHAC case report formsdefinitions added, examples updated
27
PHA4GE (SC2)1.0.0
28
29
1.3.42022-07-21
30
CanCOGeN (SC2)1.0.0
31
DEXA (One Health)1.0.0
32
GISAID (SC2)1.0.0
33
GRDI1.0.0
34
Monkeypox2.2.1"cheek" added anatomical part pick list, gene names for PCR testing restructured and additional target added
35
Monkeypox-international2.2.1"cheek" added anatomical part pick list
36
PHA4GE (SC2)1.0.0
37
38
1.3.51.3.52022-08-04
39
CanCOGeN (SC2)1.0.0
40
DEXA (One Health)1.0.0
41
GISAID (SC2)1.0.0
42
GRDI1.0.0
43
Monkeypox3.2.1LIMS export field updated (PH_SEQUENCE_SUBMITTER)
44
Monkeypox-international3.3.1Environmental material field addedEnvironmental terms added, Additional hosts added to Host pick lists
45
PHA4GE (SC2)1.0.0
46
47
1.3.61.4.22022-09-07
48
CanCOGeN (SC2)1.0.0
49
DEXA (One Health)1.0.0
50
GISAID (SC2)1.0.0
51
GRDI1.0.0
52
Monkeypox3.3.1OVP to OPV gene name change
53
Monkeypox-international3.3.1
54
PHA4GE (SC2)1.0.0
55
56
1.3.81.4.3Same template content, but DH version bump.
57
58
1.3.91.4.32022-11-15CanCOGeN (SC2)1.0.1DataHarmonizer provenance: updated definition, guidance/comments, and examples. Fixed "body products" so that it uses the picklist menu.
59
DEXA (One Health)1.0.0
60
GISAID (SC2)1.0.0
61
GRDI1.0.0
62
Monkeypox3.3.2Updated NML LIMS export (removed references to CanCOGeN). DataHarmonizer provenance: updated definition, guidance/comments, and examples.
63
Monkeypox-international3.3.2DataHarmonizer provenance: updated definition, guidance/comments, and examples.
64
PHA4GE (SC2)1.0.1DataHarmonizer provenance: updated definition, guidance/comments, and examples.
65
66
2.0.01.4.4CanCOGeN (SC2)1.0.1
67
DEXA (One Health)1.0.0
68
GISAID (SC2)1.0.0
69
GRDI5.2.1new fields, AMR_measurement field removednew IDsdes/formats/examples for new fields, and new examples for several existing fields
70
Monkeypox3.3.2
71
Monkeypox-international3.3.2
72
PHA4GE (SC2)1.0.1
73
AMBR1.0.0
74
2.0.11.4.5CanCOGeN (SC2)2.1.2"travel history availability" field added
travel history availablity picklist added
travel history availability definitions, guidance, examples added. Values for this field export to "PH_TRAVEL" in NML LIMS
75
DEXA (One Health)1.0.0
76
GISAID (SC2)1.0.0
77
GRDI5.2.1
78
Monkeypox3.3.2
79
Monkeypox-international3.3.2
80
PHA4GE (SC2)1.0.1
81
AMBR2.1.1
"top-hit strain determination" field added, "sequencing protocol" field removed
plant parts moved from "environmental material" to "anatomical part" e.g. Leaf; living things in "environmental material" moved to "host (common name)" e.g. Tree; media picklist created, primers picklist created; environmental materials added e.g. Mobile phone, Mobile phone touchscreen; types of water labels updated e.g. Surface runoff; some environmental sites moved to "environmental material" e.g. Bird bath, Fish tank;
new ontology IDs added, field defintions and guidance updated
82
2.0.2a1.4.5CanCOGeN (SC2)2.1.3updated test file added
83
DEXA (One Health)1.0.0
84
GISAID (SC2)1.0.0
85
GRDI5.2.1
86
Monkeypox3.3.3PH_INSTRUMENT_CGN field removed from LIMS export
87
Monkeypox-international3.3.2
88
PHA4GE (SC2)1.0.1
89
AMBR2.2.2
removed underscores from "sample collection project name"; added media types to "isolation media" list
removed multi-tagging for "purpose of sampling"; added multi-tagging for "amplicon pcr primer list"; restructured primer definitions (removed primer sequences from 16s/23s primer definitions); "taxonomic identification method", "taxonomic identification method details" and "host (common name)" given "required" status; "host (common name)" guidance updated.
90
2.0.31.4.6CanCOGeN (SC2)2.1.3
91
DEXA (One Health)1.0.0
92
GISAID (SC2)1.0.0
93
GRDI5.2.1
94
Monkeypox3.3.3
95
Monkeypox-international3.3.2
96
PHA4GE (SC2)1.0.1
97
AMBR2.3.0
added universal primers 557F, ITS1F and ITS4R to primer list
98
2.0.41.4.7Mar 14, 2023CanCOGeN (SC2)2.1.3Fix to scientific name being converted to "Human" (now reports as Homo sapiens)
99
DEXA (One Health)1.0.0
100
GISAID (SC2)1.0.0