SRA/ENA study accession

scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation

10.1186/s13059-019-1906-x

Massively parallel digital transcriptional profiling of single cells

10.1038/ncomms14049

Organoid single-cell genomic atlas uncovers human-specific features of brain development

10.1038/s41586-019-1654-9

ERP114427;ERP116607;ERP116749;ERP116752;ERP116771;ERP116974

PRJEB31821;PRJEB33787;PRJEB33917;PRJEB33920;PRJEB33938;PRJEB34117

Characterization of cell fate probabilities in single-cell data with Palantir

10.1038/s41587-019-0068-4

Swedish Human Developmental Cell Atlas: a comprehensive molecular atlas of human prenatal development

Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma

10.1038/s41591-018-0269-2

Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

10.1038/s41467-018-06318-7

Spatiotemporal immune zonation of the human kidney

10.1126/science.aat5031

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease

10.1016/j.cell.2018.08.067

GSE114374;GSE95435;GSE95446;GSE95450

SRP100786;SRP100793;SRP100795;SRP145547

PRJNA377118;PRJNA377145;PRJNA377153;PRJNA471188

Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis

10.1126/sciadv.aba1972

Transcriptomic Profiling of the Developing Cardiac Conduction System at Single-Cell Resolution

10.1161/CIRCRESAHA.118.314578

Maturation of heart valve cell populations during postnatal remodeling

10.1242/dev.173047

Resolving the fibrotic niche of human liver cirrhosis at single-cell level

10.1038/s41586-019-1631-3

Resolving the fibrotic niche of human liver cirrhosis at single-cell level

10.1038/s41586-019-1631-3

A single-cell survey of the human first-trimester placenta and decidua

10.1126/sciadv.aau4788

A single-cell survey of the human first-trimester placenta and decidua

10.1126/sciadv.aau4788

A single-cell atlas of the human substantia nigra reveals cell-specific pathways associated with neurological disorders

10.1038/s41467-020-17876-0

Transcriptomic and clonal characterization of T cells in the human central nervous system

10.1126/sciimmunol.abb8786

Single-Cell Heterogeneity Analysis and CRISPR Screen Identify Key β-Cell-Specific Disease Genes

10.1016/j.celrep.2019.02.043

Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in human

10.1038/s41467-020-17876-0

Neuronal vulnerability and multilineage diversity in multiple sclerosis

10.1038/s41586-019-1404-z

Single-Cell Transcriptome Analysis Reveals Dynamic Cell Populations and Differential Gene Expression Patterns in Control and Aneurysmal Human Aortic Tissue

10.1161/CIRCULATIONAHA.120.046528

An atlas of human proximal epididymis reveals cell-specific functions and distinct roles for CFTR

10.26508/lsa.202000744

Comparative Analysis and Refinement of Human PSC-Derived Kidney Organoid Differentiation with Single-Cell Transcriptomics

10.1016/j.stem.2018.10.010

https://gitlab.ebi.ac.uk/ebi-gene-expression/scxa-metadata/-/merge_requests/152

Molecular Architecture of the Mouse Nervous System

10.1016/j.cell.2018.06.021

Oleic acid restores suppressive defects in tissue-resident FOXP3 Tregs from patients with multiple sclerosis

Mapping the immune environment in clear cell renal carcinoma by single-cell genomics

10.1038/s42003-020-01625-6

10.1038/s41586-020-2797-4

A single cell atlas of human cornea that defines its development, limbal progenitor cells and their interactions with the immune cells

Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation

10.1038/s41588-021-00801-6

45c2c853-d06f-4879-957e-f1366fb5d423

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex.

10.1038/nbt.2967

The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty.

10.1016/j.stem.2019.12.005

6621c827-b57a-4268-bc80-df4049140193

Single-cell transcriptome profiling of the human developing spinal cord reveals a conserved genetic programme with human-specific features.

10.1242/dev.199711

GSE171890;GSE171892;GSE171891

PRJNA721338;PRJNA721339;PRJNA721336

Single-nucleus transcriptomics of the prefrontal cortex in major depressive disorder implicates oligodendrocyte precursor cells and excitatory neurons

10.1038/s41593-020-0621-y

A molecular single-cell lung atlas of lethal COVID-19

10.1038/s41586-021-03569-1

Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment

10.1016/j.cell.2018.05.060

GSE114727;GSE114725;GSE114725

A single cell atlas of human cornea that defines its development, limbal progenitor cells and their interactions with the immune cells

10.1016/j.jtos.2021.03.010

A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex

10.1038/nature25980

Transcriptomic characterization of 20 organs and tissues from mouse at single cell resolution creates a Tabula Muris

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

10.1038/s41591-020-0844-1

Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mice

10.3390/cells9051144

Distinct microbial and immune niches of the human colon

10.1038/s41590-020-0602-z

ERP118165;ERP118273;E-MTAB-8484;E-MTAB-8486

Identification of Embryonic Neural Plate Border Stem Cells and Their Generation by Direct Reprogramming from Adult Human Blood Cells

10.1016/j.stem.2018.11.015

Gut microbiota modulates weight gain in mice after discontinued smoke exposure

10.1038/s41586-021-04194-8

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues

10.1016/j.cell.2020.04.035

Maturing Human CD127+ CCR7+ PDL1+ Dendritic Cells Express AIRE in the Absence of Tissue Restricted Antigens

10.3389/fimmu.2018.02902

Transcriptomic Profiling of the Developing Cardiac Conduction System at Single-Cell Resolution

10.1161/CIRCRESAHA.118.314578

8755a961-5355-4a36-ba7b-3a126630bce8;GSE132658;SRP201293

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types

10.1101/gr.207704.116

Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19

10.1126/sciimmunol.abd1554

In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution

10.1016/j.devcel.2020.01.033

Transcriptomic characterization of the human cell cycle in individual unsynchronized cells.

10.1016/j.jmb.2017.10.011

Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury

10.7554/eLife.43882

Isolation and Comparative Transcriptome Analysis of Human Fetal and iPSC-Derived Cone Photoreceptor Cells

10.1016/j.stemcr.2017.10.018

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma.

10.1126/science.1254257

Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma.

10.1016/j.celrep.2017.10.030

RNA Sequencing of Single Human Islet Cells Reveals Type 2 Diabetes Genes.

10.1016/j.cmet.2016.08.018

Intrinsic transcriptional heterogeneity in B cells controls early class switching to IgE

10.1084/jem.20161056

Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila.

10.1038/s41467-020-18135-y

An Integrated Gene Expression Landscape Profiling Approach to Identify Lung Tumor Endothelial Cell Heterogeneity and Angiogenic Candidates

10.1016/j.ccell.2019.12.001

Gene expression variability across cells and species shapes innate immunity

10.1038/s41586-018-0657-2

Profiling human breast epithelial cells using single cell RNA sequencing identifies cell diversity.

10.1038/s41467-018-04334-1

GSE113099;GSE113127;GSE113198;SRP140488;SRP140489;SRP140536

A living biobank of ovarian cancer ex vivo models reveals profound mitotic heterogeneity

10.1038/s41467-020-14551-2

A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain

10.1016/j.cell.2018.05.057

A cell atlas of human thymic development defines T cell repertoire formation

10.1126/science.aay3224

Single-nucleus RNA-seq resolves spatiotemporal developmental trajectories in the tomato shoot apex

10.1101/2020.09.20.305029

Maturation trajectories and transcriptional landscape of plasmablasts and autoreactive B cells in COVID-19

10.1016/j.isci.2021.103325

Tracing the origin of adult intestinal stem cells

10.1038/s41586-019-1212-5

Context-specific regulation of surface and soluble IL7R expression by an autoimmune risk allele

10.1038/s41467-019-12393-1

Cancer induces a stress ileopathy depending on B-adrenergic receptors and promoting dysbiosis that contribute to carcinogenesis

10.1158/2159-8290.CD-21-0999

T cell cytolytic capacity is independent of initial stimulation strength

10.1038/s41590-018-0160-9

Vitamin A-Retinoic Acid Signaling RegulatesHematopoietic Stem Cell Dormancy

10.1016/j.cell.2017.04.018

Single cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development

10.1242/dev.167833

Transcriptomic and clonal characterization of T cells in the human central nervous system.

10.1126/sciimmunol.abb8786

d3a4ceac-4d66-4984-9704-2570c0647a56;GSE157277;SRP279608

Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis

10.1038/s41591-020-0939-8

Dissecting hematopoietic and renal cell heterogeneity in adult zebrafish at single-cell resolution using RNA sequencing.

10.1084/jem.20170976

CpG island composition differences are a source of gene expression noise indicative of promoter responsiveness

10.1186/s13059-018-1461-x

The onset of circulation triggers a metabolic switch required for endothelial to hematopoietic transition

10.1016/j.celrep.2021.110103

Characterization of cell fate probabilities in single-cell data with Palantir

091cf39b-01bc-42e5-9437-f419a66c8a45

A cell atlas of adult muscle precursors uncovers early events in fibre-type divergence in Drosophila.

10.15252/embr.201949555

High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types

10.1016/j.celrep.2019.04.054

A single-cell atlas of adult Drosophila ovary identifies transcriptional programs and somatic cell lineage regulating oogenesis.

10.1371/journal.pbio.3000538

Epithelial-Mesenchymal Micro-niches Govern Stem Cell Lineage Choices.

10.1016/j.cell.2017.03.038

Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation

10.1016/j.celrep.2019.06.041

Toward Minimal Residual Disease-Directed Therapy in Melanoma.

10.1016/j.cell.2018.06.025

Re-evaluation of human BDCA-2+ DC during acute sterile skin inflammation

10.1084/jem.20190811

Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing mouse spinal cord

10.1242/dev.173807

A living biobank of ovarian cancer ex vivo models reveals profound mitotic heterogeneity

10.1038/s41467-020-14551-2

Transcriptional landscape of rice roots at the single-cell resolution.

10.1016/j.molp.2020.12.014

A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain

10.1016/j.cell.2018.05.057

Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli are Altered with Age

Single-cell transcriptome atlas and chromatin accessibility landscape reveal differentiation trajectories in the rice root

10.1038/s41467-021-22352-4

Resolving the fibrotic niche of human liver cirrhosis at single-cell level.

10.1038/s41586-019-1631-3

GSE136103;aab80553-7551-4a9d-becf-68b238d21087

Single-Cell Heterogeneity Analysis and CRISPR Screen Identify Key β-Cell-Specific Disease Genes

10.1016/j.celrep.2019.02.043

1c6a960d-52ac-44ea-b728-a59c7ab9dc8e;GSE101207;SRP111557

A single-cell molecular map of mouse gastrulation and early organogenesis

10.1038/s41586-019-0933-9

Reversible De-differentiation of Mature White Adipocytes into Preadipocyte-like Precursors during Lactation

10.1016/j.cmet.2018.05.022

A Transcriptional Lineage of the Early C. elegans Embryo.

10.1016/j.devcel.2016.07.025