Coral/Symbiont Genomes and Transcriptomes

	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P	Q
1		family	genus	species	strain	partner_type	tissue_source	resource_type	methods	research_group	contact	publication_status	anticipated_release_date	data_link	publication_link	publication_reference	notes

2	Scleractinia	Acroporidae	Acropora	millepora	NA	host	holobiont	genome	PacBio / 10x genomics / Illumina	Matz, Przeworski	matz@utexas.edu, mp3284@columbia.edu	published	released	https://www.dropbox.com/s/hezqx79m3fk1l8e/Amil_v2.01_annotated.zip?dl=0	https://doi.org/10.1126/science.aba4674
3	Scleractinia	Acroporidae	Acropora	cervicornis	NA	host	holobiont/sperm	genome	short read/ long read	Baums	baums@psu.edu	unpublished	Mid 2021	N/A	N/A
4	Scleractinia	Acroporidae	Acropora	palmata	NA	host	holobiont/sperm	genome	short read/ long read/ HiC	Baums	baums@psu.edu	unpublished	Mid 2021	N/A	N/A
5	Scleractinia	Acroporidae	Acropora	clathrata		host		genome	short read	Allen Chen' Lab/Parisa Alidoost Salimi	P_Alidoostsalimi@yahoo.com	unpublished				Alidoost Salimi et al. (unpublished)
6	Scleractinia	Acroporidae	Acropora	downingi		host		genome	short read	Allen Chen' Lab/Parisa Alidoost Salimi	P_Alidoostsalimi@yahoo.com	unpublished				Alidoost Salimi et al. (unpublished)
7	Scleractinia		Acropora	cervicornis		host and symbiont	holobiont	genome	short read / long read / Hi-C	Lopez	joslo@nova.edu	unpublished	2021
8	Scleractinia		Acropora	cervicornis		host and symbiont	holobiont	genome	short read / long read / Hi-C	Lopez	joslo@nova.edu	unpublished	2021
9	Scleractinia		Acropora	cytherea		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
10	Scleractinia		Acropora	hyacinthus		host	sperm	genome	PacBio/Illumina/Omni-C	Palumbi+Albright	elopez-nandam@calacademy.org	biorxiv	2021	https://www.ncbi.nlm.nih.gov/assembly/GCA_020536085.1/ (You can download the associated gff3, proteins fasta, and other annotation files for this assembly here: https://drive.google.com/drive/u/1/folders/15dh6eE8q850frTRVtglndXtzxSwj673g)	https://www.biorxiv.org/content/10.1101/2021.07.20.453148v1	López-Nandam et al. (preprint)
11	Scleractinia		Acropora	intermedia		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
12	Scleractinia		Acropora	muricata		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
13	Scleractinia		Acropora	palmata		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
14	Scleractinia		Acropora	pulchra		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
15	Scleractinia		Acropora	spathulata		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
16	Scleractinia		Acropora	valida		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
17	Scleractinia		Agaricia	agaricites		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
18	Scleractinia		Alveopora	japonica		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
19	Scleractinia	Rhizangiidae	Astrangia	poculata	NA	host	holobiont	genome	short read/ long read/ HiC	Baums	baums@psu.edu	unpublished	2021	N/A	N/A
20	Scleractinia		Balanophyllia	europaea		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
21	Scleractinia		Blastomussa	merleti		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
22	Scleractinia		Blastomussa	wellsi		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
23	Scleractinia		Colpophyllia	natans		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
24	Scleractinia	Merulinidae	Cyphastrea	microphthalma		host		genome	short read	Parisa Alidoost Salimi/Pargol Ghavam Mostafavi	P_Alidoostsalimi@yahoo.com	published		https://link.springer.com/article/10.1007/s11033-021-06251-x		Alidoost Salimi et al. 2021, Mol Biol Rep.
25	Scleractinia		Dendrogyra	cylindrus		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
26	Scleractinia		Diploria	labyrinthiformis		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
27	Scleractinia		Echinopora	lamellosa		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
28	Scleractinia	Merulinidae	Favites	pentagona		host		genome	short read	Parisa Alidoost Salimi/Pargol Ghavam Mostafavi	P_Alidoostsalimi@yahoo.com	published		https://link.springer.com/article/10.1007/s11033-021-06251-x		Alidoost Salimi et al. 2021, Mol Biol Rep.
31	Scleractinia		Galaxea	fascicularis		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
32	Scleractinia		Goniastrea	retiformis		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
34	Scleractinia	Poritidae	Goniopora	columna		host		genome	short read	Parisa Alidoost Salimi/Pargol Ghavam Mostafavi	P_Alidoostsalimi@yahoo.com	published		https://link.springer.com/article/10.1007/s11033-021-06251-x		Alidoost Salimi et al. 2021, Mol Biol Rep.
35	Scleractinia	Poritidae	Goniopora	djiboutiensis		host		genome	short read	Parisa Alidoost Salimi/Pargol Ghavam Mostafavi	P_Alidoostsalimi@yahoo.com	published		https://link.springer.com/article/10.1007/s11033-021-06251-x		Alidoost Salimi et al. 2021, Mol Biol Rep.
36	Scleractinia		Isopora	brueggemanni		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
37	Scleractinia		Meandrina	meandrites		host and symbiont	holobiont	genome	short read / long read / Hi-C	Lopez	joslo@nova.edu	unpublished	2021
38	Scleractinia		Meandrina	meandrites		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
39	Scleractinia		Micromussa	lordhowensis		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
40	Scleractinia	Faviidae	Montastraea	cavernosa	NA	host	holobiont	genome	PacBio / 10x genomics	Matz	matz@utexas.edu	published	released	https://www.dropbox.com/s/yfqefzntt896xfz/Mcavernosa_genome.tgz	https://doi.org/10.1111/mec.15931	Rippe et al 2021, Molecular Ecology
41	Scleractinia		Montastraea	cavernosa		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
45	Scleractinia	Acroporidae	Montipora	capitata		host	sperm	genome	PacBio, hybrid	Bhattacharya, Putnam	hputnam@uri.edu	published	released	http://cyanophora.rutgers.edu/montipora/	https://www.nature.com/articles/s41598-019-39274-3	Shumaker et al 2019
46	Scleractinia		Montipora	capitata		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
47	Scleractinia		Montipora	digitata		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
48	Scleractinia		Mussismilia	brasiliensis		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
49	Scleractinia		Mussismilia	hispida		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
51	Scleractinia		Oculina	arbuscula		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
52	Scleractinia		Oculina	patagonia		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
53	Scleractinia		Oculina	varicosa		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021	https://www.ncbi.nlm.nih.gov/sra/SRX6096996[accn]	https://doi.org/10.3389/fmars.2019.00662
54	Scleractinia		Oculina	patagonica		host and symbiont	holobiont	genome	short read Illumina	Tali Mass	tmass@univ.haifa.ac.il	unpublished	2021				From Israel
55	Scleractinia		Orbicella	annularis		host	sperm	genome	short read / long read / Hi-C	Lopez	joslo@nova.edu	unpublished	2021
56	Scleractinia		Orbicella	faveolata		host	sperm	genome	short read / long read / Hi-C	Lopez	joslo@nova.edu	unpublished	2021
57	Scleractinia		Orbicella	arbuscula		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
58	Scleractinia		Orbicella	franksi		host	sperm	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
59	Scleractinia		Orbicella	radians		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
60	Scleractinia	Agariciidae	Pavona	cactus		host		genome	short read	Parisa Alidoost Salimi/Pargol Ghavam Mostafavi	P_Alidoostsalimi@yahoo.com	published		https://link.springer.com/article/10.1007/s11033-021-06251-x		Alidoost Salimi et al. 2021, Mol Biol Rep.
61	Scleractinia	Agariciidae	Pavona	decussata		host		genome	short read	Parisa Alidoost Salimi/Pargol Ghavam Mostafavi	P_Alidoostsalimi@yahoo.com	published		https://link.springer.com/article/10.1007/s11033-021-06251-x		Alidoost Salimi et al. 2021, Mol Biol Rep.
62	Scleractinia	Merulinidae	Platygyra	daedalea		host		genome	short read	Parisa Alidoost Salimi/Pargol Ghavam Mostafavi	P_Alidoostsalimi@yahoo.com	published		https://link.springer.com/article/10.1007/s11033-021-06251-x		Alidoost Salimi et al. 2021, Mol Biol Rep.
65	Scleractinia	Pocilloporidae	Pocillopora	damicornis		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
66	Scleractinia	Pocilloporidae	Pocillopora	grandis		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
68	Scleractinia	Pocilloporidae	Pocillopora	meandrina		host	holobiont	genome	PacBio, hybrid	Bhattacharya, Putnam	hputnam@uri.edu	unpublished	2021
69	Scleractinia	Pocilloporidae	Pocillopora	acuta		host	holobiont	genome	PacBio, hybrid	Bhattacharya, Putnam	hputnam@uri.edu	unpublished
75	Scleractinia	Poritidae	Porites	astreoides		host	holobiont	genome	PacBio, hybrid	Putnam	hputnam@uri.edu	unpublished	2021
76	Scleractinia	Poritidae	Porites	compressa		host	sperm	genome	PacBio, hybrid	Bhattacharya, Putnam	hputnam@uri.edu	unpublished	released
77	Scleractinia	Poritidae	Porites	harrisoni		host		genome	short read	Parisa Alidoost Salimi/Pargol Ghavam Mostafavi	P_Alidoostsalimi@yahoo.com	unpublished
78	Scleractinia		Porites	cylindrica		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
79	Scleractinia		Porites	rus		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
80	Scleractinia		Pseudodiploria	strigosa		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
82	Scleractinia	Pocilloporidae	Seriatopora	hystrix		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
84	Scleractinia	Siderastreidae	Siderastrea	savignyana		host	holobiont	genome	short read	Parisa Alidoost Salimi/Pargol Ghavam Mostafavi	P_Alidoostsalimi@yahoo.com	published		https://link.springer.com/article/10.1007/s11033-021-06251-x		Alidoost Salimi et al. 2021, Mol Biol Rep.
85	Scleractinia		Siderastrea	siderea		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
86	Scleractinia		Siderastrea	stellata		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
87	Scleractinia		Stephanocoenia	intersepta		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
88	Scleractinia		Stylophora	subseriata		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
89	Scleractinia		Turbinaria	reniformis		host and symbiont	holobiont	genome	short read / long read / Hi-C	Sweet / Coral Genome Project	M.Sweet@derby.ac.uk	unpublished	2021
91	Scleractinia	Acroporidae	Montipora	grisea		host and symbiont	holobiont	genome	PacBio / Omni-C	Barshis, Radice	barshis@gmail.com	unpublished	2023				mesophotic; American Sāmoa
92	Scleractinia	Agariciidae	Leptoseris	scabra		host and symbiont	holobiont	genome	PacBio / Omni-C	Barshis, Radice	barshis@gmail.com	unpublished	2023				mesophotic; American Sāmoa
93	Scleractinia	Agariciidae	Helioseris	cucullata		host	holobiont	genome	PacBio	Bongaerts, Hernandez-Agreda	alejhernandez@calacademy.org	unpublished	2023
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