ABCDEFGHIJKLMNOPQRSTUVWXYZAAABACADAE
1
familygenusspeciesstrainpartner_typetissue_source
resource_type
methodsresearch_groupcontact
publication_status
anticipated_release_date
data_linkpublication_linkpublication_referencenotes
2
SuessialesSymbiodiniaceaeEffreniumvoratumCCMP421free-livingculturegenome10X Genomics linked readsRodriguez-Lanetty/Chanc.chan1@uq.edu.auunpublishedChan et al. (unpublished)
3
SuessialesSymbiodiniaceaeEffreniumvoratumRCC1521free-livingculturegenomeshort reads + long readsChanc.chan1@uq.edu.auunpublished
4
SuessialesSymbiodiniaceaeEffreniumvoratumrt-383free-livingculturegenomeshort reads + long readsChanc.chan1@uq.edu.auunpublished
5
ScleractiniaAcroporidaeAcroporamilleporaNAhostholobiontgenome
PacBio / 10x genomics / Illumina
Matz, Przeworski
matz@utexas.edu, mp3284@columbia.edu
publishedreleased
https://www.dropbox.com/s/hezqx79m3fk1l8e/Amil_v2.01_annotated.zip?dl=0
https://doi.org/10.1126/science.aba4674
6
ScleractiniaAcroporidaeAcroporacervicornisNAhostholobiont/spermgenomeshort read/ long readBaumsbaums@psu.eduunpublishedMid 2021N/AN/A
7
ScleractiniaAcroporidaeAcroporapalmataNAhostholobiont/spermgenomeshort read/ long read/ HiCBaumsbaums@psu.eduunpublishedMid 2021N/AN/A
8
ScleractiniaEuphylliidaeGalaxeaacrheliaNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleased
https://dornsife.usc.edu/labs/carlslab/data/
https://academic.oup.com/gigascience/article/6/9/gix074/4091589
9
ScleractiniaEuphylliidaeGalaxeaastreataNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleased
https://dornsife.usc.edu/labs/carlslab/data/
https://academic.oup.com/gigascience/article/6/9/gix074/4091589
10
ScleractiniaPoritidaeGonioporacolumnaNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleased
https://dornsife.usc.edu/labs/carlslab/data/
https://academic.oup.com/gigascience/article/6/9/gix074/4091589
11
ScleractiniaAcroporidaeAcroporaclathratahostgenomeshort read
Allen Chen' Lab/Parisa Alidoost Salimi
P_Alidoostsalimi@yahoo.com
unpublishedAlidoost Salimi et al. (unpublished)
12
ScleractiniaAcroporidaeAcroporadowningihostgenomeshort read
Allen Chen' Lab/Parisa Alidoost Salimi
P_Alidoostsalimi@yahoo.com
unpublishedAlidoost Salimi et al. (unpublished)
13
ScleractiniaAcroporacervicornis
host and symbiont
holobiontgenome
short read / long read / Hi-C
Lopezjoslo@nova.eduunpublished2021
14
ScleractiniaAcroporidaeMontiporaaequituberculataNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleased
https://dornsife.usc.edu/labs/carlslab/data/
https://royalsocietypublishing.org/doi/10.1098/rspb.2019.0111
15
ScleractiniaAcroporidaeMontiporaaequituberculataNAhostholobionttranscriptomeIlluminaMatz, van Oppenmatz@utexas.edupublishedreleased
https://www.dropbox.com/s/mnkqwz7oi3l226c/maequituberculata_transcriptome_july2014.zip?dl=0
https://doi.org/10.1111/mec.14489
16
ScleractiniaAcroporacervicornis
host and symbiont
holobiontgenome
short read / long read / Hi-C
Lopezjoslo@nova.eduunpublished2021
17
ScleractiniaAcroporidaeMontiporacapitatahostholobionttranscriptomeIlluminaBhattacharya, Putnamhputnam@uri.edupublishedreleased
http://cyanophora.rutgers.edu/montipora/
https://www.nature.com/articles/s41598-019-39274-3Shumaker et al 2019
18
ScleractiniaOculinapatagonicahostholobionttranscriptomeIlluminaTali Masstmass@univ.haifa.ac.ilpublishedreleased
19
ScleractiniaAcroporacytherea
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
20
ScleractiniaAcroporahyacinthushostspermgenomePacBio/Illumina/Omni-CPalumbi+Albright
elopez-nandam@calacademy.org
biorxiv2021
https://www.ncbi.nlm.nih.gov/assembly/GCA_020536085.1/ (You can download the associated gff3, proteins fasta, and other annotation files for this assembly here: https://drive.google.com/drive/u/1/folders/15dh6eE8q850frTRVtglndXtzxSwj673g)
https://www.biorxiv.org/content/10.1101/2021.07.20.453148v1
López-Nandam et al. (preprint)
21
ScleractiniaAcroporaintermedia
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
22
ScleractiniaAcroporamuricata
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
23
ScleractiniaPoritidaePoriteslobataNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleased
https://dornsife.usc.edu/labs/carlslab/data/
https://onlinelibrary.wiley.com/doi/abs/10.1111/mec.15608
24
ScleractiniaPoritidaePoritesastreoidesNAhostholobionttranscriptome454 (gosh) Matzmatz@utexas.edupublishedreleased
https://www.dropbox.com/s/dzvr219crsbgt0n/pastreoides_2014.zip?dl=0
doi: 10.1111/mec.12390
25
ScleractiniaSiderastreidaeSiderastreasidereaNAhostholobionttranscriptomeshort readDaviesdaviessw@gmail.compublishedreleased
http://sites.bu.edu/davieslab/files/2017/11/Siderastrea_siderea_transcriptome.zip
https://www.frontiersin.org/articles/10.3389/fmars.2016.00112/full
26
ScleractiniaAcroporapalmata
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
27
ScleractiniaAcroporapulchra
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
28
ScleractiniaAcroporaspathulata
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
29
ScleractiniaAcroporavalida
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
30
ScleractiniaAgariciaagaricites
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
31
ScleractiniaAlveoporajaponica
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
32
ScleractiniaRhizangiidaeAstrangiapoculataNAhostholobiontgenomeshort read/ long read/ HiCBaumsbaums@psu.eduunpublished2021N/AN/A
33
ScleractiniaBalanophylliaeuropaea
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
34
ScleractiniaPocilloporidaePocillopora meandrinahostholobionttranscriptomeIlluminaBhattacharya, Putnamhputnam@uri.eduunpublished2021
35
ScleractiniaBlastomussamerleti
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
36
ScleractiniaBlastomussawellsi
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
37
ScleractiniaColpophyllianatans
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
38
ScleractiniaPoritidaePoritesastreoideshostholobionttranscriptomeIlluminaPutnamhputnam@uri.eduunpublished2021
39
ScleractiniaPoritidaePoritescompressahostspermtranscriptomeIlluminaBhattacharya, Putnamhputnam@uri.eduunpublished2021
40
ScleractiniaPoritidaePoriteslobatahostholobionttranscriptomeIlluminaBhattacharya, Putnamhputnam@uri.eduunpublished2021
41
ScleractiniaPocilloporidaePocilloporaacuta
host and symbiont
holobionttranscriptomeshort readMayfieldabm64@miami.edupublishedreleased
http://symbiont.iis.sinica.edu.tw/coral_pdltte/static/html/index.html#home
https://onlinelibrary.wiley.com/doi/full/10.1111/mec.12982Mayfield et al. 2014, Molecular Ecology
check out the website for interactive querying features
42
ScleractiniaPocilloporidaePocillopora
acuta + damicornis
host and symbiont
holobionttranscriptomeshort readTraylor-Knowles
mconnelly@rsmas.miami.edu
published2021
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA587509/
https://doi.org/10.1016/j.dci.2020.103717
43
ScleractiniaPocilloporidaeSeriatoporahystrix
host and symbiont
holobionttranscriptomeshort readMayfieldabm64@miami.edupublishedreleased
http://symbiont.iis.sinica.edu.tw/s_hystrix/static/html/
https://onlinelibrary.wiley.com/doi/full/10.1111/mec.13896Mayfield et al. 2016, Molecular Ecology
the website may be temporarily down for maintenance
44
ScleractiniaMerulinidaeCyphastrea microphthalmahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.com
published
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
45
ScleractiniaDiplorialabyrinthiformis
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
46
ScleractiniaEchinoporalamellosa
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
47
ScleractiniaMerulinidaeFavites pentagonahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.com
published
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
48
ScleractiniaGalaxeafascicularis
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
49
ScleractiniaGoniastrearetiformis
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
50
ScleractiniaPoritidaeGonioporacolumnahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.com
published
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
51
ScleractiniaPoritidaeGonioporadjiboutiensishostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.com
published
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
52
ScleractiniaDendrogyracylindrus
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
53
ScleractiniaIsoporabrueggemanni
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
54
ScleractiniaMeandrinameandrites
host and symbiont
holobiontgenome
short read / long read / Hi-C
Lopezjoslo@nova.eduunpublished2021
55
ScleractiniaMeandrinameandrites
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
56
ScleractiniaMicromussalordhowensis
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
57
ScleractiniaFaviidaeMontastraeacavernosaNAhostholobiontgenomePacBio / 10x genomicsMatzmatz@utexas.edupublishedreleased
https://www.dropbox.com/s/yfqefzntt896xfz/Mcavernosa_genome.tgz
https://doi.org/10.1111/mec.15931 Rippe et al 2021, Molecular Ecology
58
ScleractiniaMontastraeacavernosa
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
59
ScleractiniaAcroporidaeMontiporacapitatahostspermgenomePacBio, hybridBhattacharya, Putnamhputnam@uri.edupublishedreleased
http://cyanophora.rutgers.edu/montipora/
https://www.nature.com/articles/s41598-019-39274-3Shumaker et al 2019
60
ScleractiniaMontiporacapitata
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
61
ScleractiniaMontiporadigitata
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
62
ScleractiniaMussismiliabrasiliensis
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
63
ScleractiniaMussismiliahispida
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
64
ScleractiniaOculinaarbuscula
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
65
ScleractiniaOculinapatagonia
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
66
ScleractiniaOculinavaricosa
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
https://www.ncbi.nlm.nih.gov/sra/SRX6096996[accn]
https://doi.org/10.3389/fmars.2019.00662
67
ScleractiniaOculinapatagonica
host and symbiont
holobiontgenomeshort read IlluminaTali Masstmass@univ.haifa.ac.ilunpublished2021From Israel
68
ScleractiniaOrbicellaannularishostspermgenome
short read / long read / Hi-C
Lopezjoslo@nova.eduunpublished2021
69
ScleractiniaOrbicellafaveolatahostspermgenome
short read / long read / Hi-C
Lopezjoslo@nova.eduunpublished2021
70
ScleractiniaOrbicellaarbuscula
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
71
ScleractiniaOrbicellafranksihostspermgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
72
ScleractiniaOrbicellaradians
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
73
ScleractiniaAgariciidaePavonacactushostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.com
published
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
74
ScleractiniaAgariciidaePavonadecussatahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.com
published
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
75
ScleractiniaMerulinidaePlatygyradaedaleahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.com
published
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
76
ScleractiniaPocilloporidaePocilloporadamicornis
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
77
ScleractiniaPocilloporidaePocilloporagrandis
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
78
ScleractiniaPocilloporidaePocillopora meandrinahostholobiontgenomePacBio, hybridBhattacharya, Putnamhputnam@uri.eduunpublished2021
79
ScleractiniaPocilloporidaePocillopora acutahostholobiontgenomePacBio, hybridBhattacharya, Putnamhputnam@uri.eduunpublished
80
ScleractiniaPoritidaePoritesastreoideshostholobiontgenomePacBio, hybridPutnamhputnam@uri.eduunpublished2021
81
ScleractiniaPoritidaePoritescompressahostspermgenomePacBio, hybridBhattacharya, Putnamhputnam@uri.eduunpublishedreleased
82
ScleractiniaPoritidaePoritesharrisonihostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.com
unpublished
83
ScleractiniaPoritescylindrica
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
84
ScleractiniaPoritesrus
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
85
ScleractiniaPseudodiploriastrigosa
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
86
ScleractiniaPocilloporidaeSeriatoporahystrix
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
87
ScleractiniaSiderastreidaeSiderastreasavignyanahostholobiontgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.com
published
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
88
ScleractiniaSiderastreasiderea
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
89
ScleractiniaSiderastreastellata
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
90
ScleractiniaStephanocoeniaintersepta
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
91
ScleractiniaStylophorasubseriata
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
92
ScleractiniaTurbinariareniformis
host and symbiont
holobiontgenome
short read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
93
SuessialesSymbiodiniaceaeBreviolumminutumSSB01symbiontculturetranscriptomeGrossman
agrossman@carnegiescience.edu
publishedreleasedXiang et al. 2015, The Plant Journal
94
SuessialesSymbiodiniaceaeBreviolumaenigmaticummac04-487 symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleased
Parkinson et al. 2016, Genome Biology and Evolution
95
SuessialesSymbiodiniaceaeBreviolumminutum
mac703, Mf1.05b, rt002, rt351 
symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleased
Parkinson et al. 2016, Genome Biology and Evolution
96
SuessialesSymbiodiniaceaeBreviolumpseudominutumrt146symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleased
Parkinson et al. 2016, Genome Biology and Evolution
97
SuessialesSymbiodiniaceaeBreviolumpsygmophilum
HIAp, Mf10.14b.02, PurPFlex, rt141 
symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleased
Parkinson et al. 2016, Genome Biology and Evolution
98
SuessialesSymbiodiniaceaeBreviolumminutumMf1.05bsymbiontculturegenomeSatohnorisky@oist.jppublishedreleasedShoguchi et al. 2013, Current Biology
99
SuessialesSymbiodiniaceaeBreviolumminutumMf1.05bsymbiontculturetranscriptomeVoolstra
christian.voolstra@uni-konstanz.de
publishedreleasedBayer et al. 2012, PLoS One
100
SuessialesSymbiodiniaceaeCladocopiumsp.symbionttranscriptomeChanc.chan1@uq.edu.aupublishedreleased
Gonzalez-Pech et al. 2016, Frontiers in Marine Science