| A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z | AA | AB | AC | AD | AE | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | family | genus | species | strain | partner_type | tissue_source | resource_type | methods | research_group | contact | publication_status | anticipated_release_date | data_link | publication_link | publication_reference | notes | |||||||||||||||
2 | Scleractinia | Acroporidae | Acropora | millepora | NA | host | holobiont | genome | PacBio / 10x genomics / Illumina | Matz, Przeworski | matz@utexas.edu, mp3284@columbia.edu | published | released | https://www.dropbox.com/s/hezqx79m3fk1l8e/Amil_v2.01_annotated.zip?dl=0 | https://doi.org/10.1126/science.aba4674 | ||||||||||||||||
3 | Scleractinia | Acroporidae | Acropora | cervicornis | NA | host | holobiont/sperm | genome | short read/ long read | Baums | baums@psu.edu | unpublished | Mid 2021 | N/A | N/A | ||||||||||||||||
4 | Scleractinia | Acroporidae | Acropora | palmata | NA | host | holobiont/sperm | genome | short read/ long read/ HiC | Baums | baums@psu.edu | unpublished | Mid 2021 | N/A | N/A | ||||||||||||||||
5 | Scleractinia | Acroporidae | Acropora | clathrata | host | genome | short read | Allen Chen' Lab/Parisa Alidoost Salimi | P_Alidoostsalimi@yahoo.com | unpublished | Alidoost Salimi et al. (unpublished) | ||||||||||||||||||||
6 | Scleractinia | Acroporidae | Acropora | downingi | host | genome | short read | Allen Chen' Lab/Parisa Alidoost Salimi | P_Alidoostsalimi@yahoo.com | unpublished | Alidoost Salimi et al. (unpublished) | ||||||||||||||||||||
7 | Scleractinia | Acropora | cervicornis | host and symbiont | holobiont | genome | short read / long read / Hi-C | Lopez | joslo@nova.edu | unpublished | 2021 | ||||||||||||||||||||
8 | Scleractinia | Acropora | cervicornis | host and symbiont | holobiont | genome | short read / long read / Hi-C | Lopez | joslo@nova.edu | unpublished | 2021 | ||||||||||||||||||||
9 | Scleractinia | Acropora | cytherea | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
10 | Scleractinia | Acropora | hyacinthus | host | sperm | genome | PacBio/Illumina/Omni-C | Palumbi+Albright | elopez-nandam@calacademy.org | biorxiv | 2021 | https://www.ncbi.nlm.nih.gov/assembly/GCA_020536085.1/ (You can download the associated gff3, proteins fasta, and other annotation files for this assembly here: https://drive.google.com/drive/u/1/folders/15dh6eE8q850frTRVtglndXtzxSwj673g) | https://www.biorxiv.org/content/10.1101/2021.07.20.453148v1 | López-Nandam et al. (preprint) | |||||||||||||||||
11 | Scleractinia | Acropora | intermedia | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
12 | Scleractinia | Acropora | muricata | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
13 | Scleractinia | Acropora | palmata | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
14 | Scleractinia | Acropora | pulchra | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
15 | Scleractinia | Acropora | spathulata | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
16 | Scleractinia | Acropora | valida | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
17 | Scleractinia | Agaricia | agaricites | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
18 | Scleractinia | Alveopora | japonica | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
19 | Scleractinia | Rhizangiidae | Astrangia | poculata | NA | host | holobiont | genome | short read/ long read/ HiC | Baums | baums@psu.edu | unpublished | 2021 | N/A | N/A | ||||||||||||||||
20 | Scleractinia | Balanophyllia | europaea | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
21 | Scleractinia | Blastomussa | merleti | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
22 | Scleractinia | Blastomussa | wellsi | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
23 | Scleractinia | Colpophyllia | natans | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
24 | Scleractinia | Merulinidae | Cyphastrea | microphthalma | host | genome | short read | Parisa Alidoost Salimi/Pargol Ghavam Mostafavi | P_Alidoostsalimi@yahoo.com | published | https://link.springer.com/article/10.1007/s11033-021-06251-x | Alidoost Salimi et al. 2021, Mol Biol Rep. | |||||||||||||||||||
25 | Scleractinia | Dendrogyra | cylindrus | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
26 | Scleractinia | Diploria | labyrinthiformis | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
27 | Scleractinia | Echinopora | lamellosa | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
28 | Scleractinia | Merulinidae | Favites | pentagona | host | genome | short read | Parisa Alidoost Salimi/Pargol Ghavam Mostafavi | P_Alidoostsalimi@yahoo.com | published | https://link.springer.com/article/10.1007/s11033-021-06251-x | Alidoost Salimi et al. 2021, Mol Biol Rep. | |||||||||||||||||||
29 | Scleractinia | Euphylliidae | Galaxea | acrhelia | NA | host | holobiont | transcriptome | short read | Kenkel | ckenkel@usc.edu | published | released | https://dornsife.usc.edu/labs/carlslab/data/ | https://academic.oup.com/gigascience/article/6/9/gix074/4091589 | ||||||||||||||||
30 | Scleractinia | Euphylliidae | Galaxea | astreata | NA | host | holobiont | transcriptome | short read | Kenkel | ckenkel@usc.edu | published | released | https://dornsife.usc.edu/labs/carlslab/data/ | https://academic.oup.com/gigascience/article/6/9/gix074/4091589 | ||||||||||||||||
31 | Scleractinia | Galaxea | fascicularis | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
32 | Scleractinia | Goniastrea | retiformis | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
33 | Scleractinia | Poritidae | Goniopora | columna | NA | host | holobiont | transcriptome | short read | Kenkel | ckenkel@usc.edu | published | released | https://dornsife.usc.edu/labs/carlslab/data/ | https://academic.oup.com/gigascience/article/6/9/gix074/4091589 | ||||||||||||||||
34 | Scleractinia | Poritidae | Goniopora | columna | host | genome | short read | Parisa Alidoost Salimi/Pargol Ghavam Mostafavi | P_Alidoostsalimi@yahoo.com | published | https://link.springer.com/article/10.1007/s11033-021-06251-x | Alidoost Salimi et al. 2021, Mol Biol Rep. | |||||||||||||||||||
35 | Scleractinia | Poritidae | Goniopora | djiboutiensis | host | genome | short read | Parisa Alidoost Salimi/Pargol Ghavam Mostafavi | P_Alidoostsalimi@yahoo.com | published | https://link.springer.com/article/10.1007/s11033-021-06251-x | Alidoost Salimi et al. 2021, Mol Biol Rep. | |||||||||||||||||||
36 | Scleractinia | Isopora | brueggemanni | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
37 | Scleractinia | Meandrina | meandrites | host and symbiont | holobiont | genome | short read / long read / Hi-C | Lopez | joslo@nova.edu | unpublished | 2021 | ||||||||||||||||||||
38 | Scleractinia | Meandrina | meandrites | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
39 | Scleractinia | Micromussa | lordhowensis | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
40 | Scleractinia | Faviidae | Montastraea | cavernosa | NA | host | holobiont | genome | PacBio / 10x genomics | Matz | matz@utexas.edu | published | released | https://www.dropbox.com/s/yfqefzntt896xfz/Mcavernosa_genome.tgz | https://doi.org/10.1111/mec.15931 | Rippe et al 2021, Molecular Ecology | |||||||||||||||
41 | Scleractinia | Montastraea | cavernosa | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
42 | Scleractinia | Acroporidae | Montipora | aequituberculata | NA | host | holobiont | transcriptome | short read | Kenkel | ckenkel@usc.edu | published | released | https://dornsife.usc.edu/labs/carlslab/data/ | https://royalsocietypublishing.org/doi/10.1098/rspb.2019.0111 | ||||||||||||||||
43 | Scleractinia | Acroporidae | Montipora | aequituberculata | NA | host | holobiont | transcriptome | Illumina | Matz, van Oppen | matz@utexas.edu | published | released | https://www.dropbox.com/s/mnkqwz7oi3l226c/maequituberculata_transcriptome_july2014.zip?dl=0 | https://doi.org/10.1111/mec.14489 | ||||||||||||||||
44 | Scleractinia | Acroporidae | Montipora | capitata | host | holobiont | transcriptome | Illumina | Bhattacharya, Putnam | hputnam@uri.edu | published | released | http://cyanophora.rutgers.edu/montipora/ | https://www.nature.com/articles/s41598-019-39274-3 | Shumaker et al 2019 | ||||||||||||||||
45 | Scleractinia | Acroporidae | Montipora | capitata | host | sperm | genome | PacBio, hybrid | Bhattacharya, Putnam | hputnam@uri.edu | published | released | http://cyanophora.rutgers.edu/montipora/ | https://www.nature.com/articles/s41598-019-39274-3 | Shumaker et al 2019 | ||||||||||||||||
46 | Scleractinia | Montipora | capitata | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
47 | Scleractinia | Montipora | digitata | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
48 | Scleractinia | Mussismilia | brasiliensis | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
49 | Scleractinia | Mussismilia | hispida | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
50 | Scleractinia | Oculina | patagonica | host | holobiont | transcriptome | Illumina | Tali Mass | tmass@univ.haifa.ac.il | published | released | ||||||||||||||||||||
51 | Scleractinia | Oculina | arbuscula | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
52 | Scleractinia | Oculina | patagonia | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
53 | Scleractinia | Oculina | varicosa | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | https://www.ncbi.nlm.nih.gov/sra/SRX6096996[accn] | https://doi.org/10.3389/fmars.2019.00662 | ||||||||||||||||||
54 | Scleractinia | Oculina | patagonica | host and symbiont | holobiont | genome | short read Illumina | Tali Mass | tmass@univ.haifa.ac.il | unpublished | 2021 | From Israel | |||||||||||||||||||
55 | Scleractinia | Orbicella | annularis | host | sperm | genome | short read / long read / Hi-C | Lopez | joslo@nova.edu | unpublished | 2021 | ||||||||||||||||||||
56 | Scleractinia | Orbicella | faveolata | host | sperm | genome | short read / long read / Hi-C | Lopez | joslo@nova.edu | unpublished | 2021 | ||||||||||||||||||||
57 | Scleractinia | Orbicella | arbuscula | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
58 | Scleractinia | Orbicella | franksi | host | sperm | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
59 | Scleractinia | Orbicella | radians | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
60 | Scleractinia | Agariciidae | Pavona | cactus | host | genome | short read | Parisa Alidoost Salimi/Pargol Ghavam Mostafavi | P_Alidoostsalimi@yahoo.com | published | https://link.springer.com/article/10.1007/s11033-021-06251-x | Alidoost Salimi et al. 2021, Mol Biol Rep. | |||||||||||||||||||
61 | Scleractinia | Agariciidae | Pavona | decussata | host | genome | short read | Parisa Alidoost Salimi/Pargol Ghavam Mostafavi | P_Alidoostsalimi@yahoo.com | published | https://link.springer.com/article/10.1007/s11033-021-06251-x | Alidoost Salimi et al. 2021, Mol Biol Rep. | |||||||||||||||||||
62 | Scleractinia | Merulinidae | Platygyra | daedalea | host | genome | short read | Parisa Alidoost Salimi/Pargol Ghavam Mostafavi | P_Alidoostsalimi@yahoo.com | published | https://link.springer.com/article/10.1007/s11033-021-06251-x | Alidoost Salimi et al. 2021, Mol Biol Rep. | |||||||||||||||||||
63 | Scleractinia | Pocilloporidae | Pocillopora | acuta | host and symbiont | holobiont | transcriptome | short read | Mayfield | abm64@miami.edu | published | released | http://symbiont.iis.sinica.edu.tw/coral_pdltte/static/html/index.html#home | https://onlinelibrary.wiley.com/doi/full/10.1111/mec.12982 | Mayfield et al. 2014, Molecular Ecology | check out the website for interactive querying features | |||||||||||||||
64 | Scleractinia | Pocilloporidae | Pocillopora | acuta + damicornis | host and symbiont | holobiont | transcriptome | short read | Traylor-Knowles | mconnelly@rsmas.miami.edu | published | 2021 | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA587509/ | https://doi.org/10.1016/j.dci.2020.103717 | |||||||||||||||||
65 | Scleractinia | Pocilloporidae | Pocillopora | damicornis | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | |||||||||||||||||||
66 | Scleractinia | Pocilloporidae | Pocillopora | grandis | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | |||||||||||||||||||
67 | Scleractinia | Pocilloporidae | Pocillopora | meandrina | host | holobiont | transcriptome | Illumina | Bhattacharya, Putnam | hputnam@uri.edu | unpublished | 2021 | |||||||||||||||||||
68 | Scleractinia | Pocilloporidae | Pocillopora | meandrina | host | holobiont | genome | PacBio, hybrid | Bhattacharya, Putnam | hputnam@uri.edu | unpublished | 2021 | |||||||||||||||||||
69 | Scleractinia | Pocilloporidae | Pocillopora | acuta | host | holobiont | genome | PacBio, hybrid | Bhattacharya, Putnam | hputnam@uri.edu | unpublished | ||||||||||||||||||||
70 | Scleractinia | Poritidae | Porites | lobata | NA | host | holobiont | transcriptome | short read | Kenkel | ckenkel@usc.edu | published | released | https://dornsife.usc.edu/labs/carlslab/data/ | https://onlinelibrary.wiley.com/doi/abs/10.1111/mec.15608 | ||||||||||||||||
71 | Scleractinia | Poritidae | Porites | astreoides | NA | host | holobiont | transcriptome | 454 (gosh) | Matz | matz@utexas.edu | published | released | https://www.dropbox.com/s/dzvr219crsbgt0n/pastreoides_2014.zip?dl=0 | doi: 10.1111/mec.12390 | ||||||||||||||||
72 | Scleractinia | Poritidae | Porites | astreoides | host | holobiont | transcriptome | Illumina | Putnam | hputnam@uri.edu | unpublished | 2021 | |||||||||||||||||||
73 | Scleractinia | Poritidae | Porites | compressa | host | sperm | transcriptome | Illumina | Bhattacharya, Putnam | hputnam@uri.edu | unpublished | 2021 | |||||||||||||||||||
74 | Scleractinia | Poritidae | Porites | lobata | host | holobiont | transcriptome | Illumina | Bhattacharya, Putnam | hputnam@uri.edu | unpublished | 2021 | |||||||||||||||||||
75 | Scleractinia | Poritidae | Porites | astreoides | host | holobiont | genome | PacBio, hybrid | Putnam | hputnam@uri.edu | unpublished | 2021 | |||||||||||||||||||
76 | Scleractinia | Poritidae | Porites | compressa | host | sperm | genome | PacBio, hybrid | Bhattacharya, Putnam | hputnam@uri.edu | unpublished | released | |||||||||||||||||||
77 | Scleractinia | Poritidae | Porites | harrisoni | host | genome | short read | Parisa Alidoost Salimi/Pargol Ghavam Mostafavi | P_Alidoostsalimi@yahoo.com | unpublished | |||||||||||||||||||||
78 | Scleractinia | Porites | cylindrica | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
79 | Scleractinia | Porites | rus | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
80 | Scleractinia | Pseudodiploria | strigosa | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
81 | Scleractinia | Pocilloporidae | Seriatopora | hystrix | host and symbiont | holobiont | transcriptome | short read | Mayfield | abm64@miami.edu | published | released | http://symbiont.iis.sinica.edu.tw/s_hystrix/static/html/ | https://onlinelibrary.wiley.com/doi/full/10.1111/mec.13896 | Mayfield et al. 2016, Molecular Ecology | the website may be temporarily down for maintenance | |||||||||||||||
82 | Scleractinia | Pocilloporidae | Seriatopora | hystrix | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | |||||||||||||||||||
83 | Scleractinia | Siderastreidae | Siderastrea | siderea | NA | host | holobiont | transcriptome | short read | Davies | daviessw@gmail.com | published | released | http://sites.bu.edu/davieslab/files/2017/11/Siderastrea_siderea_transcriptome.zip | https://www.frontiersin.org/articles/10.3389/fmars.2016.00112/full | ||||||||||||||||
84 | Scleractinia | Siderastreidae | Siderastrea | savignyana | host | holobiont | genome | short read | Parisa Alidoost Salimi/Pargol Ghavam Mostafavi | P_Alidoostsalimi@yahoo.com | published | https://link.springer.com/article/10.1007/s11033-021-06251-x | Alidoost Salimi et al. 2021, Mol Biol Rep. | ||||||||||||||||||
85 | Scleractinia | Siderastrea | siderea | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
86 | Scleractinia | Siderastrea | stellata | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
87 | Scleractinia | Stephanocoenia | intersepta | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
88 | Scleractinia | Stylophora | subseriata | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
89 | Scleractinia | Turbinaria | reniformis | host and symbiont | holobiont | genome | short read / long read / Hi-C | Sweet / Coral Genome Project | M.Sweet@derby.ac.uk | unpublished | 2021 | ||||||||||||||||||||
90 | Scleractinia | Siderastrea | siderea | host and symbiont | holobiont | transcriptome | Illumina | Barshis, Radice | barshis@gmail.com | unpublished | 2022 | Transcriptome available | Yucatan, Mexico | ||||||||||||||||||
91 | Scleractinia | Acroporidae | Montipora | grisea | host and symbiont | holobiont | genome | PacBio / Omni-C | Barshis, Radice | barshis@gmail.com | unpublished | 2023 | mesophotic; American Sāmoa | ||||||||||||||||||
92 | Scleractinia | Agariciidae | Leptoseris | scabra | host and symbiont | holobiont | genome | PacBio / Omni-C | Barshis, Radice | barshis@gmail.com | unpublished | 2023 | mesophotic; American Sāmoa | ||||||||||||||||||
93 | Scleractinia | Agariciidae | Helioseris | cucullata | host | holobiont | genome | PacBio | Bongaerts, Hernandez-Agreda | alejhernandez@calacademy.org | unpublished | 2023 | |||||||||||||||||||
94 | Suessiales | Symbiodiniaceae | Breviolum | minutum | SSB01 | symbiont | culture | transcriptome | Grossman | agrossman@carnegiescience.edu | published | released | Xiang et al. 2015, The Plant Journal | ||||||||||||||||||
95 | Suessiales | Symbiodiniaceae | Breviolum | aenigmaticum | mac04-487 | symbiont | culture | transcriptome | Parkinson | jparkinson@usf.edu | published | released | Parkinson et al. 2016, Genome Biology and Evolution | ||||||||||||||||||
96 | Suessiales | Symbiodiniaceae | Breviolum | minutum | mac703, Mf1.05b, rt002, rt351 | symbiont | culture | transcriptome | Parkinson | jparkinson@usf.edu | published | released | Parkinson et al. 2016, Genome Biology and Evolution | ||||||||||||||||||
97 | Suessiales | Symbiodiniaceae | Breviolum | pseudominutum | rt146 | symbiont | culture | transcriptome | Parkinson | jparkinson@usf.edu | published | released | Parkinson et al. 2016, Genome Biology and Evolution | ||||||||||||||||||
98 | Suessiales | Symbiodiniaceae | Breviolum | psygmophilum | HIAp, Mf10.14b.02, PurPFlex, rt141 | symbiont | culture | transcriptome | Parkinson | jparkinson@usf.edu | published | released | Parkinson et al. 2016, Genome Biology and Evolution | ||||||||||||||||||
99 | Suessiales | Symbiodiniaceae | Breviolum | minutum | Mf1.05b | symbiont | culture | genome | Satoh | norisky@oist.jp | published | released | Shoguchi et al. 2013, Current Biology | ||||||||||||||||||
100 | Suessiales | Symbiodiniaceae | Breviolum | minutum | Mf1.05b | symbiont | culture | transcriptome | Voolstra | christian.voolstra@uni-konstanz.de | published | released | Bayer et al. 2012, PLoS One |