ABCDEFGHIJKLMNOPQRSTUVWXYZAAABACADAEAFAG
1
orderfamilygenusspecies
host_genome_voucher
sym_genome_voucher
strainpartner_typetissue_source
resource_type
methodsresearch_groupcontact
publication_status
anticipated_release_date
data_linkpublication_linkpublication_referencenotest
2
ScleractiniaAcroporidaeAcroporamilleporaNAhostholobiontgenomePacBio / 10x genomics / IlluminaMatz, Przeworski
matz@utexas.edu, mp3284@columbia.edu
publishedreleasedhttps://www.dropbox.com/s/hezqx79m3fk1l8e/Amil_v2.01_annotated.zip?dl=0https://doi.org/10.1126/science.aba4674
3
SuessialesSymbiodiniaceaeBreviolumminutumSSB01symbiontculturetranscriptomeGrossman
agrossman@carnegiescience.edu
publishedreleasedXiang et al. 2015, The Plant Journal
4
SuessialesSymbiodiniaceaeBreviolumaenigmaticummac04-487 symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleasedParkinson et al. 2016, Genome Biology and Evolution
5
SuessialesSymbiodiniaceaeBreviolumminutummac703, Mf1.05b, rt002, rt351 symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleasedParkinson et al. 2016, Genome Biology and Evolution
6
SuessialesSymbiodiniaceaeBreviolumpseudominutumrt146symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleasedParkinson et al. 2016, Genome Biology and Evolution
7
SuessialesSymbiodiniaceaeBreviolumpsygmophilumHIAp, Mf10.14b.02, PurPFlex, rt141 symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleasedParkinson et al. 2016, Genome Biology and Evolution
8
SuessialesSymbiodiniaceaeBreviolumminutumMf1.05bsymbiontculturegenomeSatohnorisky@oist.jppublishedreleasedShoguchi et al. 2013, Current Biology
9
SuessialesSymbiodiniaceaeBreviolumminutumMf1.05bsymbiontculturetranscriptomeVoolstra
christian.voolstra@uni-konstanz.de
publishedreleasedBayer et al. 2012, PLoS One
10
SuessialesSymbiodiniaceaeCladocopiumsp.symbionttranscriptomeChanc.chan1@uq.edu.aupublishedreleasedGonzalez-Pech et al. 2016, Frontiers in Marine Science
11
SuessialesSymbiodiniaceaeCladocopiumsp.symbiontholobionttranscriptomeshort readDaviesdaviessw@gmail.compublishedreleasedhttp://sites.bu.edu/davieslab/files/2017/11/CladeC_Symbiodinium_transcriptome.zip
https://www.frontiersin.org/articles/10.3389/fmars.2018.00150/full
12
SuessialesSymbiodiniaceaeCladocopiumsp.symbionttranscriptomeDaviesdaviessw@gmail.compublishedreleasedDavies et al. 2016, Frontiers in Marine Science
13
SuessialesSymbiodiniaceaeCladocopiumgoreauiMMETSP1367, MMETSP1369symbiontculturetranscriptomeKeelingpkeeling@mail.ubc.capublishedreleasedKeeling et al. 2014, PLoS Biology
14
SuessialesSymbiodiniaceaeCladocopiumsp.MMETSP1370-1symbiontculturetranscriptomeKeelingpkeeling@mail.ubc.capublishedreleasedKeeling et al. 2014, PLoS Biology
15
SuessialesSymbiodiniaceaeCladocopiumsp.symbionttranscriptomePalumbispalumbi@stanford.edupublishedreleasedLadner et al. 2012, BMC Evolutionary Biology
16
SuessialesSymbiodiniaceaeCladocopiumsp. C3symbiontgenomeSatohnorisky@oist.jppublishedreleasedShoguchi et al. 2018, BMC Genomics
17
SuessialesSymbiodiniaceaeCladocopiumgoreauisymbiontgenomeVoolstra
christian.voolstra@uni-konstanz.de
publishedreleasedLiu et al. 2018, Communications Biology
18
SuessialesSymbiodiniaceaeCladocopiumthermophilumsymbiontgenomeVoolstra
christian.voolstra@uni-konstanz.de
publishedreleasedVoolstra et al. (unpublished)
19
SuessialesSymbiodiniaceaeCladocopiumgoreauiMI-SCF055symbiontculturetranscriptomevan Oppen
madeleine.van@unimelb.edu.au
publishedreleasedLevin et al. 2016, Molecular Biology and Evolution
20
SuessialesSymbiodiniaceaeCladocopiumgoreauiWSYsymbiontculturetranscriptomevan Oppen
madeleine.van@unimelb.edu.au
publishedreleasedLevin et al. 2016, Molecular Biology and Evolution
21
SuessialesSymbiodiniaceaeDurusdiniumtrenchiiMMETSP1377symbiontculturetranscriptomeKeelingpkeeling@mail.ubc.capublishedreleasedKeeling et al. 2014, PLoS Biology
22
SuessialesSymbiodiniaceaeDurusdiniumtrenchiisymbionttranscriptomePalumbispalumbi@stanford.edupublishedreleasedLadner et al. 2012, BMC Evolutionary Biology
23
SuessialesSymbiodiniaceaeDurusdiniumtrenchiiCCMP2556symbiontculturegenomeRodriguez-Lanettyrodmauri@fiu.edupublishedreleasedRodriguez-Lanetty et al. (unpublished)
24
SuessialesSymbiodiniaceaeDurusdiniumtrenchiisymbiontgenomeSatohnorisky@oist.jppublishedreleased
25
SuessialesSymbiodiniaceaeEffreniumsp.CCMP421 (MMETSP1122-5)symbiontculturetranscriptomeKeelingpkeeling@mail.ubc.capublishedreleasedKeeling et al. 2014, PLoS Biology
26
SuessialesSymbiodiniaceaeFugaciumkawagutiiCCMP2468 (MMETSP0132_2C)symbiontculturetranscriptomeKeelingpkeeling@mail.ubc.capublishedreleasedKeeling et al. 2014, PLoS Biology
27
SuessialesSymbiodiniaceaeFugaciumkawagutiiCCMP2468 symbiontculturegenomeLinsenjie.lin@uconn.edupublishedreleasedLin et al. 2015, Science
28
SuessialesSymbiodiniaceaeFugaciumkawagutiiCCMP2468symbiontculturegenomeVoolstra
christian.voolstra@uni-konstanz.de
publishedreleasedLiu et al. 2018, Communications Biology
29
ScleractiniaEuphylliidaeGalaxeaacrheliaNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleasedhttps://dornsife.usc.edu/labs/carlslab/data/
https://academic.oup.com/gigascience/article/6/9/gix074/4091589
30
ScleractiniaEuphylliidaeGalaxeaastreataNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleasedhttps://dornsife.usc.edu/labs/carlslab/data/
https://academic.oup.com/gigascience/article/6/9/gix074/4091589
31
SuessialesSymbiodiniaceaeGerakladiumendoclionumsymbiontholobionttranscriptomeStrehlow
strehow@biology.sdu.dsk
publishedreleasedStrehlow et al. 2020 Coral Reefs
32
ScleractiniaPoritidaeGonioporacolumnaNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleasedhttps://dornsife.usc.edu/labs/carlslab/data/
https://academic.oup.com/gigascience/article/6/9/gix074/4091589
33
ScleractiniaAgariciidaeLeptoserisscabrahost and symbiontholobiontgenomePacBio / Omni-CBarshis, Radicebarshis@gmail.compublishedreleasedosf.io/kdm8f/https://doi.org/10.1093/jhered/esaf010Radice et al. 2025, Journal of Heredity
Best to use OSF data files due to required NCBI filtering criteria (http://osf.io/kdm8f/); Leptoseris cf. scabra (perhaps L. cf. columna); mesophotic; American Sāmoa
34
ScleractiniaFaviidaeMontastraeacavernosaNAhostholobiontgenomePacBio / 10x genomicsMatzmatz@utexas.edupublishedreleasedhttps://www.dropbox.com/s/yfqefzntt896xfz/Mcavernosa_genome.tgzhttps://doi.org/10.1111/mec.15931 Rippe et al 2021, Molecular Ecology
35
ScleractiniaAcroporidaeMontiporaaequituberculataNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleasedhttps://dornsife.usc.edu/labs/carlslab/data/https://royalsocietypublishing.org/doi/10.1098/rspb.2019.0111
36
ScleractiniaAcroporidaeMontiporaaequituberculataNAhostholobionttranscriptomeIlluminaMatz, van Oppenmatz@utexas.edupublishedreleasedhttps://www.dropbox.com/s/mnkqwz7oi3l226c/maequituberculata_transcriptome_july2014.zip?dl=0https://doi.org/10.1111/mec.14489
37
ScleractiniaAcroporidaeMontiporacapitatahostholobionttranscriptomeIlluminaBhattacharya, Putnamhputnam@uri.edupublishedreleasedhttp://cyanophora.rutgers.edu/montipora/https://www.nature.com/articles/s41598-019-39274-3Shumaker et al 2019
38
ScleractiniaAcroporidaeMontiporacapitatahostspermgenomePacBio, hybridBhattacharya, Putnamhputnam@uri.edupublishedreleasedhttp://cyanophora.rutgers.edu/montipora/https://www.nature.com/articles/s41598-019-39274-3Shumaker et al 2019
39
ScleractiniaAcroporidaeMontiporagriseahost and symbiontholobiontgenomePacBio / Omni-CBarshis, Radicebarshis@gmail.compublishedreleasedosf.io/kdm8f/https://doi.org/10.1093/jhered/esaf010Radice et al. 2025, Journal of Heredity
Best to use OSF data files due to required NCBI filtering criteria (http://osf.io/kdm8f/); mesophotic; American Sāmoa
40
ScleractiniaOculinidaeOculinapatagonicahostholobionttranscriptomeIlluminaTali Masstmass@univ.haifa.ac.ilpublishedreleased
41
ScleractiniaPocilloporidaePocilloporaacutahost and symbiontholobionttranscriptomeshort readMayfieldabm64@miami.edupublishedreleasedhttp://symbiont.iis.sinica.edu.tw/coral_pdltte/static/html/index.html#homehttps://onlinelibrary.wiley.com/doi/full/10.1111/mec.12982Mayfield et al. 2014, Molecular Ecologycheck out the website for interactive querying features
42
ScleractiniaPoritidaePoriteslobataNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleasedhttps://dornsife.usc.edu/labs/carlslab/data/https://onlinelibrary.wiley.com/doi/abs/10.1111/mec.15608
43
ScleractiniaPoritidaePoritesastreoidesNAhostholobionttranscriptome454 (gosh) Matzmatz@utexas.edupublishedreleasedhttps://www.dropbox.com/s/dzvr219crsbgt0n/pastreoides_2014.zip?dl=0doi: 10.1111/mec.12390
44
ScleractiniaPoritidaePoritescompressahostspermgenomePacBio, hybridBhattacharya, Putnamhputnam@uri.eduunpublishedreleased
45
ScleractiniaPocilloporidaeSeriatoporahystrixhost and symbiontholobionttranscriptomeshort readMayfieldabm64@miami.edupublishedreleasedhttp://symbiont.iis.sinica.edu.tw/s_hystrix/static/html/https://onlinelibrary.wiley.com/doi/full/10.1111/mec.13896Mayfield et al. 2016, Molecular Ecologythe website may be temporarily down for maintenance
46
ScleractiniaSiderastreidaeSiderastreasidereaNAhostholobionttranscriptomeshort readDaviesdaviessw@gmail.compublishedreleasedhttp://sites.bu.edu/davieslab/files/2017/11/Siderastrea_siderea_transcriptome.zip
https://www.frontiersin.org/articles/10.3389/fmars.2016.00112/full
47
ScleractiniaSiderastreidaeSiderastreasidereahost and symbiontholobionttranscriptomeIlluminaBarshis, Radicebarshis@gmail.compublishedreleaseddoi.org/10.17605/OSF.IO/U47CNhttps://onlinelibrary.wiley.com/doi/10.1111/mec.17186Radice et al. 2024, Molecular EcologyYucatan, Mexico
48
SuessialesSymbiodiniaceaeSymbiodiniumsp.CCMP2430 (MMETSP1115-17)symbiontculturetranscriptomeKeelingpkeeling@mail.ubc.capublishedreleasedKeeling et al. 2014, PLoS Biology
49
SuessialesSymbiodiniaceaeSymbiodiniummicroadriaticumCCMP2467symbiontculturegenomeAranda
manuel.aranda@kaust.edu.sa
publishedreleasedAranda et al. 2016, Scientific Reports
50
SuessialesSymbiodiniaceaeSymbiodiniummicroadriaticumsymbiontculturegenomeshort readAranda/Voolstra
manuel.aranda@kaust.edu.sa
publishedreleasedhttp://smic.reefgenomics.org/https://www.nature.com/articles/srep39734
51
SuessialesSymbiodiniaceaeSymbiodiniumlinucheaeCCMP2456symbiontculturegenomeChanc.chan1@uq.edu.aupublishedreleasedGonzalez-Pech et al. 2019, bioRxiv
52
SuessialesSymbiodiniaceaeSymbiodiniummicroadriaticum04-503SCI.03symbiontculturegenomeChanc.chan1@uq.edu.aupublishedreleasedGonzalez-Pech et al. 2019, bioRxiv
53
SuessialesSymbiodiniaceaeSymbiodiniummicroadriaticumCassKB8symbiontculturegenomeChanc.chan1@uq.edu.aupublishedreleasedGonzalez-Pech et al. 2019, bioRxiv
54
SuessialesSymbiodiniaceaeSymbiodiniumnatansCCMP2548symbiontculturegenomeChanc.chan1@uq.edu.aupublishedreleasedGonzalez-Pech et al. 2019, bioRxiv
55
SuessialesSymbiodiniaceaeSymbiodiniumnecroappetensCCMP2469symbiontculturegenomeChanc.chan1@uq.edu.aupublishedreleasedGonzalez-Pech et al. 2019, bioRxiv
56
SuessialesSymbiodiniaceaeSymbiodiniumpilosumCCMP2461symbiontculturegenomeChanc.chan1@uq.edu.aupublishedreleasedGonzalez-Pech et al. 2019, bioRxiv
57
SuessialesSymbiodiniaceaeSymbiodiniumtridacnidorumCCMP2592symbiontculturegenomeChanc.chan1@uq.edu.aupublishedreleasedGonzalez-Pech et al. 2019, bioRxiv
58
SuessialesSymbiodiniaceaeSymbiodiniumtridacnidorumSh18symbiontgenomeSatohnorisky@oist.jppublishedreleasedShoguchi et al. 2018, BMC Genomics
59
SuessialesSymbiodiniaceaeSymbiodiniummicroadriaticumCassKB8symbiontculturetranscriptomeVoolstra
christian.voolstra@uni-konstanz.de
publishedreleasedBayer et al. 2012, PLoS One
60
ScleractiniaAcroporidaeAcroporacervicornisNAhostholobiont/spermgenomeshort read/ long readBaumsbaums@psu.eduunpublishedMid 2021N/AN/A
61
ScleractiniaAcroporidaeAcroporapalmataNAhostholobiont/spermgenomeshort read/ long read/ HiCBaumsbaums@psu.eduunpublishedMid 2021N/AN/A
62
SuessialesSymbiodiniaceaeBreviolumpsygmophilumsymbiontculturegenomeParkinsonjparkinson@usf.eduunpublishedfirst half 2023Parkinson et al. (unpublished)
63
SuessialesSymbiodiniaceaeCladocopiuminfistulumrt203symbiontculturegenomeParkinsonjparkinson@usf.eduunpublishedfirst half 2022Parkinson et al. (unpublished)
64
AlcyonaceaeGorgoniidaeAntillogorgiabipinnatahost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
65
RhizostomeaeCassiopeidaeCassiopeafrondosahost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
66
MalacalcyonaceaePlexauridaeEuniceaknightihost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
67
CardiidaCardiidaeFragumsueziensehost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
68
ScleractiniaMeandrinidaeMeandrinameandriteshost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
69
AnthoathecataMilleporidaeMilleporaalcicornishost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
70
AnthoathecataMilleporidaeMilleporacomplanatahost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
71
MalacalcyonaceaePlexauridaeMuriceamuricatahost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
72
ScleractiniaPoritidaePoritesdivaricatahost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
73
CorallimorphariaDiscosomidaeRhodactisosculiferahost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
74
SuessialesSymbiodiniaceaeSymbiodiniummicroadriaticumsymbiontculture (?)genomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
75
SuessialesSymbiodiniaceaeSymbiodiniumlinucheaesymbiontculture (?)genomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
76
ScleractiniaPlerogyridaeBlastomussawellsiGCA_947652115.1host and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukpublished2023GCA_947652115.1
77
CardiidaCardiidaeFragumfragumGCA_946902895host and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
published2023GCA_946902895
78
CardiidaCardiidaeFragumwhitleyiGCA_948146395host and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
published2023GCA_948146395
79
ScleractiniaEuphylliidaeGalaxeafascicularisGCA_948470475.1host and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukpublished2023GCA_948470475.1
80
ScleractiniaAgariciidaeHelioseriscucullatahostholobiontgenomePacBioBongaerts, Hernandez-Agreda
alejhernandez@calacademy.org
unpublished2023
81
CardiidaCardiidaeHippopushippopusGCA_946811185host and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
published2023GCA_946811185
82
ScleractiniaAcroporidaeMontiporacapitataGCA_949126865.1host and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukpublished2023GCA_949126865.1
83
ScleractiniaPoritidaePoritesluteaGCA_958299795.1host and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukpublished2023GCA_958299795.1
84
CorallimorphariaRicordeidaeRicordiafloridaGCA_949710005host and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
published2023GCA_949710005
85
CardiidaCardiidaeTridacnacroceaGCA_943736015host and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
published2023GCA_943736015
86
CardiidaCardiidaeTridacnaderasaGCA_963210305.1host and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
published2023GCA_963210305.1i
87
CardiidaCardiidaeTridacnagigasGCA_945859785host and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
published2023GCA_945859785
88
ScleractiniaAcroporidaeAcroporacervicornishost and symbiontholobiontgenomeshort read / long read / Hi-CLopezjoslo@nova.eduunpublished2021
89
ScleractiniaAcroporidaeAcroporacervicornishost and symbiontholobiontgenomeshort read / long read / Hi-CLopezjoslo@nova.eduunpublished2021
90
ScleractiniaAcroporidaeAcroporacythereahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
91
ScleractiniaAcroporidaeAcroporaglaucahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021https://www.biorxiv.org/content/10.1101/2021.07.20.453148v1López-Nandam et al. (preprint)
92
ScleractiniaAcroporidaeAcroporahyacinthushostspermgenomePacBio/Illumina/Omni-CPalumbi+Albright
elopez-nandam@calacademy.org
biorxiv2021
https://www.ncbi.nlm.nih.gov/assembly/GCA_020536085.1/ (You can download the associated gff3, proteins fasta, and other annotation files for this assembly here: https://drive.google.com/drive/u/1/folders/15dh6eE8q850frTRVtglndXtzxSwj673g)
https://www.biorxiv.org/content/10.1101/2021.07.20.453148v1López-Nandam et al. (preprint)
93
ScleractiniaAcroporidaeAcroporaintermediahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
94
ScleractiniaAcroporidaeAcroporamuricatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
95
ScleractiniaAcroporidaeAcroporapalmatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
96
ScleractiniaAcroporidaeAcroporapulchrahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
97
ScleractiniaAcroporidaeAcroporaspathulatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
98
ScleractiniaAcroporidaeAcroporavalidahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
99
ScleractiniaAgariciidaeAgariciaagariciteshost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
100
ScleractiniaAcroporidaeAlveoporajaponicahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021