ABCDEFGHIJKLMNOPQRSTUVWXYZAAABACADAE
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familygenusspeciesstrainpartner_typetissue_sourceresource_typemethodsresearch_groupcontactpublication_status
anticipated_release_date
data_linkpublication_linkpublication_referencenotes
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ScleractiniaAcroporidaeAcroporamilleporaNAhostholobiontgenome
PacBio / 10x genomics / Illumina
Matz, Przeworski
matz@utexas.edu, mp3284@columbia.edu
publishedreleased
https://www.dropbox.com/s/hezqx79m3fk1l8e/Amil_v2.01_annotated.zip?dl=0
https://doi.org/10.1126/science.aba4674
3
ScleractiniaAcroporidaeAcroporacervicornisNAhostholobiont/spermgenomeshort read/ long readBaumsbaums@psu.eduunpublishedMid 2021N/AN/A
4
ScleractiniaAcroporidaeAcroporapalmataNAhostholobiont/spermgenomeshort read/ long read/ HiCBaumsbaums@psu.eduunpublishedMid 2021N/AN/A
5
ScleractiniaAcroporidaeAcroporaclathratahostgenomeshort read
Allen Chen' Lab/Parisa Alidoost Salimi
P_Alidoostsalimi@yahoo.comunpublishedAlidoost Salimi et al. (unpublished)
6
ScleractiniaAcroporidaeAcroporadowningihostgenomeshort read
Allen Chen' Lab/Parisa Alidoost Salimi
P_Alidoostsalimi@yahoo.comunpublishedAlidoost Salimi et al. (unpublished)
7
ScleractiniaAcroporacervicornishost and symbiontholobiontgenomeshort read / long read / Hi-CLopezjoslo@nova.eduunpublished2021
8
ScleractiniaAcroporacervicornishost and symbiontholobiontgenomeshort read / long read / Hi-CLopezjoslo@nova.eduunpublished2021
9
ScleractiniaAcroporacythereahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
10
ScleractiniaAcroporahyacinthushostspermgenomePacBio/Illumina/Omni-CPalumbi+Albright
elopez-nandam@calacademy.org
biorxiv2021
https://www.ncbi.nlm.nih.gov/assembly/GCA_020536085.1/ (You can download the associated gff3, proteins fasta, and other annotation files for this assembly here: https://drive.google.com/drive/u/1/folders/15dh6eE8q850frTRVtglndXtzxSwj673g)
https://www.biorxiv.org/content/10.1101/2021.07.20.453148v1López-Nandam et al. (preprint)
11
ScleractiniaAcroporaintermediahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
12
ScleractiniaAcroporamuricatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
13
ScleractiniaAcroporapalmatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
14
ScleractiniaAcroporapulchrahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
15
ScleractiniaAcroporaspathulatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
16
ScleractiniaAcroporavalidahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
17
ScleractiniaAgariciaagariciteshost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
18
ScleractiniaAlveoporajaponicahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
19
ScleractiniaRhizangiidaeAstrangiapoculataNAhostholobiontgenomeshort read/ long read/ HiCBaumsbaums@psu.eduunpublished2021N/AN/A
20
ScleractiniaBalanophylliaeuropaeahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
21
ScleractiniaBlastomussamerletihost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
22
ScleractiniaBlastomussawellsihost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
23
ScleractiniaColpophyllianatanshost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
24
ScleractiniaMerulinidaeCyphastrea microphthalmahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
25
ScleractiniaDendrogyracylindrushost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
26
ScleractiniaDiplorialabyrinthiformishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
27
ScleractiniaEchinoporalamellosahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
28
ScleractiniaMerulinidaeFavites pentagonahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
29
ScleractiniaEuphylliidaeGalaxeaacrheliaNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleased
https://dornsife.usc.edu/labs/carlslab/data/
https://academic.oup.com/gigascience/article/6/9/gix074/4091589
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ScleractiniaEuphylliidaeGalaxeaastreataNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleased
https://dornsife.usc.edu/labs/carlslab/data/
https://academic.oup.com/gigascience/article/6/9/gix074/4091589
31
ScleractiniaGalaxeafascicularishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
32
ScleractiniaGoniastrearetiformishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
33
ScleractiniaPoritidaeGonioporacolumnaNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleased
https://dornsife.usc.edu/labs/carlslab/data/
https://academic.oup.com/gigascience/article/6/9/gix074/4091589
34
ScleractiniaPoritidaeGonioporacolumnahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
35
ScleractiniaPoritidaeGonioporadjiboutiensishostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
36
ScleractiniaIsoporabrueggemannihost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
37
ScleractiniaMeandrinameandriteshost and symbiontholobiontgenomeshort read / long read / Hi-CLopezjoslo@nova.eduunpublished2021
38
ScleractiniaMeandrinameandriteshost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
39
ScleractiniaMicromussalordhowensishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
40
ScleractiniaFaviidaeMontastraeacavernosaNAhostholobiontgenomePacBio / 10x genomicsMatzmatz@utexas.edupublishedreleased
https://www.dropbox.com/s/yfqefzntt896xfz/Mcavernosa_genome.tgz
https://doi.org/10.1111/mec.15931 Rippe et al 2021, Molecular Ecology
41
ScleractiniaMontastraeacavernosahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
42
ScleractiniaAcroporidaeMontiporaaequituberculataNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleased
https://dornsife.usc.edu/labs/carlslab/data/
https://royalsocietypublishing.org/doi/10.1098/rspb.2019.0111
43
ScleractiniaAcroporidaeMontiporaaequituberculataNAhostholobionttranscriptomeIlluminaMatz, van Oppenmatz@utexas.edupublishedreleased
https://www.dropbox.com/s/mnkqwz7oi3l226c/maequituberculata_transcriptome_july2014.zip?dl=0
https://doi.org/10.1111/mec.14489
44
ScleractiniaAcroporidaeMontiporacapitatahostholobionttranscriptomeIlluminaBhattacharya, Putnamhputnam@uri.edupublishedreleased
http://cyanophora.rutgers.edu/montipora/
https://www.nature.com/articles/s41598-019-39274-3Shumaker et al 2019
45
ScleractiniaAcroporidaeMontiporacapitatahostspermgenomePacBio, hybridBhattacharya, Putnamhputnam@uri.edupublishedreleased
http://cyanophora.rutgers.edu/montipora/
https://www.nature.com/articles/s41598-019-39274-3Shumaker et al 2019
46
ScleractiniaMontiporacapitatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
47
ScleractiniaMontiporadigitatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
48
ScleractiniaMussismiliabrasiliensishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
49
ScleractiniaMussismiliahispidahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
50
ScleractiniaOculinapatagonicahostholobionttranscriptomeIlluminaTali Masstmass@univ.haifa.ac.ilpublishedreleased
51
ScleractiniaOculinaarbusculahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
52
ScleractiniaOculinapatagoniahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
53
ScleractiniaOculinavaricosahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
https://www.ncbi.nlm.nih.gov/sra/SRX6096996[accn]
https://doi.org/10.3389/fmars.2019.00662
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ScleractiniaOculinapatagonicahost and symbiontholobiontgenomeshort read IlluminaTali Masstmass@univ.haifa.ac.ilunpublished2021From Israel
55
ScleractiniaOrbicellaannularishostspermgenomeshort read / long read / Hi-CLopezjoslo@nova.eduunpublished2021
56
ScleractiniaOrbicellafaveolatahostspermgenomeshort read / long read / Hi-CLopezjoslo@nova.eduunpublished2021
57
ScleractiniaOrbicellaarbusculahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
58
ScleractiniaOrbicellafranksihostspermgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
59
ScleractiniaOrbicellaradianshost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
60
ScleractiniaAgariciidaePavonacactushostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
61
ScleractiniaAgariciidaePavonadecussatahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
62
ScleractiniaMerulinidaePlatygyradaedaleahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
63
ScleractiniaPocilloporidaePocilloporaacutahost and symbiontholobionttranscriptomeshort readMayfieldabm64@miami.edupublishedreleased
http://symbiont.iis.sinica.edu.tw/coral_pdltte/static/html/index.html#home
https://onlinelibrary.wiley.com/doi/full/10.1111/mec.12982Mayfield et al. 2014, Molecular Ecology
check out the website for interactive querying features
64
ScleractiniaPocilloporidaePocilloporaacuta + damicornishost and symbiontholobionttranscriptomeshort readTraylor-Knowlesmconnelly@rsmas.miami.edupublished2021
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA587509/
https://doi.org/10.1016/j.dci.2020.103717
65
ScleractiniaPocilloporidaePocilloporadamicornishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
66
ScleractiniaPocilloporidaePocilloporagrandishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
67
ScleractiniaPocilloporidaePocillopora meandrinahostholobionttranscriptomeIlluminaBhattacharya, Putnamhputnam@uri.eduunpublished2021
68
ScleractiniaPocilloporidaePocillopora meandrinahostholobiontgenomePacBio, hybridBhattacharya, Putnamhputnam@uri.eduunpublished2021
69
ScleractiniaPocilloporidaePocillopora acutahostholobiontgenomePacBio, hybridBhattacharya, Putnamhputnam@uri.eduunpublished
70
ScleractiniaPoritidaePoriteslobataNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleased
https://dornsife.usc.edu/labs/carlslab/data/
https://onlinelibrary.wiley.com/doi/abs/10.1111/mec.15608
71
ScleractiniaPoritidaePoritesastreoidesNAhostholobionttranscriptome454 (gosh) Matzmatz@utexas.edupublishedreleased
https://www.dropbox.com/s/dzvr219crsbgt0n/pastreoides_2014.zip?dl=0
doi: 10.1111/mec.12390
72
ScleractiniaPoritidaePoritesastreoideshostholobionttranscriptomeIlluminaPutnamhputnam@uri.eduunpublished2021
73
ScleractiniaPoritidaePoritescompressahostspermtranscriptomeIlluminaBhattacharya, Putnamhputnam@uri.eduunpublished2021
74
ScleractiniaPoritidaePoriteslobatahostholobionttranscriptomeIlluminaBhattacharya, Putnamhputnam@uri.eduunpublished2021
75
ScleractiniaPoritidaePoritesastreoideshostholobiontgenomePacBio, hybridPutnamhputnam@uri.eduunpublished2021
76
ScleractiniaPoritidaePoritescompressahostspermgenomePacBio, hybridBhattacharya, Putnamhputnam@uri.eduunpublishedreleased
77
ScleractiniaPoritidaePoritesharrisonihostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.comunpublished
78
ScleractiniaPoritescylindricahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
79
ScleractiniaPoritesrushost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
80
ScleractiniaPseudodiploriastrigosahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
81
ScleractiniaPocilloporidaeSeriatoporahystrixhost and symbiontholobionttranscriptomeshort readMayfieldabm64@miami.edupublishedreleased
http://symbiont.iis.sinica.edu.tw/s_hystrix/static/html/
https://onlinelibrary.wiley.com/doi/full/10.1111/mec.13896Mayfield et al. 2016, Molecular Ecology
the website may be temporarily down for maintenance
82
ScleractiniaPocilloporidaeSeriatoporahystrixhost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
83
ScleractiniaSiderastreidaeSiderastreasidereaNAhostholobionttranscriptomeshort readDaviesdaviessw@gmail.compublishedreleased
http://sites.bu.edu/davieslab/files/2017/11/Siderastrea_siderea_transcriptome.zip
https://www.frontiersin.org/articles/10.3389/fmars.2016.00112/full
84
ScleractiniaSiderastreidaeSiderastreasavignyanahostholobiontgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
85
ScleractiniaSiderastreasidereahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
86
ScleractiniaSiderastreastellatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
87
ScleractiniaStephanocoeniainterseptahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
88
ScleractiniaStylophorasubseriatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
89
ScleractiniaTurbinariareniformishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
90
ScleractiniaSiderastreasidereahost and symbiontholobionttranscriptomeIlluminaBarshis, Radicebarshis@gmail.comunpublished2022Transcriptome availableYucatan, Mexico
91
ScleractiniaAcroporidaeMontiporagriseahost and symbiontholobiontgenomePacBio / Omni-CBarshis, Radicebarshis@gmail.comunpublished2023
mesophotic; American Sāmoa
92
ScleractiniaAgariciidaeLeptoserisscabrahost and symbiontholobiontgenomePacBio / Omni-CBarshis, Radicebarshis@gmail.comunpublished2023
mesophotic; American Sāmoa
93
ScleractiniaAgariciidaeHelioseriscucullatahostholobiontgenomePacBioBongaerts, Hernandez-Agreda
alejhernandez@calacademy.org
unpublished2023
94
SuessialesSymbiodiniaceaeBreviolumminutumSSB01symbiontculturetranscriptomeGrossman
agrossman@carnegiescience.edu
publishedreleasedXiang et al. 2015, The Plant Journal
95
SuessialesSymbiodiniaceaeBreviolumaenigmaticummac04-487 symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleasedParkinson et al. 2016, Genome Biology and Evolution
96
SuessialesSymbiodiniaceaeBreviolumminutum
mac703, Mf1.05b, rt002, rt351 
symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleasedParkinson et al. 2016, Genome Biology and Evolution
97
SuessialesSymbiodiniaceaeBreviolumpseudominutumrt146symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleasedParkinson et al. 2016, Genome Biology and Evolution
98
SuessialesSymbiodiniaceaeBreviolumpsygmophilum
HIAp, Mf10.14b.02, PurPFlex, rt141 
symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleasedParkinson et al. 2016, Genome Biology and Evolution
99
SuessialesSymbiodiniaceaeBreviolumminutumMf1.05bsymbiontculturegenomeSatohnorisky@oist.jppublishedreleasedShoguchi et al. 2013, Current Biology
100
SuessialesSymbiodiniaceaeBreviolumminutumMf1.05bsymbiontculturetranscriptomeVoolstra
christian.voolstra@uni-konstanz.de
publishedreleasedBayer et al. 2012, PLoS One