ABCDEFGHIJKLMNOPQRSTUVWXYZAAABACADAEAFAG
1
orderfamilygenusspecies
host_genome_voucher
sym_genome_voucher
strainpartner_typetissue_source
resource_type
methodsresearch_groupcontact
publication_status
anticipated_release_date
data_linkpublication_linkpublication_referencenotes
2
ScleractiniaAcroporidaeAcroporamilleporaNAhostholobiontgenomePacBio / 10x genomics / IlluminaMatz, Przeworski
matz@utexas.edu, mp3284@columbia.edu
publishedreleasedhttps://www.dropbox.com/s/hezqx79m3fk1l8e/Amil_v2.01_annotated.zip?dl=0https://doi.org/10.1126/science.aba4674
3
ScleractiniaAcroporidaeAcroporacervicornisNAhostholobiont/spermgenomeshort read/ long readBaumsbaums@psu.eduunpublishedMid 2021N/AN/A
4
ScleractiniaAcroporidaeAcroporapalmataNAhostholobiont/spermgenomeshort read/ long read/ HiCBaumsbaums@psu.eduunpublishedMid 2021N/AN/A
5
ScleractiniaAcroporidaeAcroporaclathratahostgenomeshort read
Allen Chen' Lab/Parisa Alidoost Salimi
P_Alidoostsalimi@yahoo.com
unpublishedAlidoost Salimi et al. (unpublished)
6
ScleractiniaAcroporidaeAcroporadowningihostgenomeshort read
Allen Chen' Lab/Parisa Alidoost Salimi
P_Alidoostsalimi@yahoo.com
unpublishedAlidoost Salimi et al. (unpublished)
7
ScleractiniaAcroporidaeAcroporacervicornishost and symbiontholobiontgenomeshort read / long read / Hi-CLopezjoslo@nova.eduunpublished2021
8
ScleractiniaAcroporidaeAcroporacervicornishost and symbiontholobiontgenomeshort read / long read / Hi-CLopezjoslo@nova.eduunpublished2021
9
ScleractiniaAcroporidaeAcroporacythereahost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
10
ScleractiniaAcroporidaeAcroporaglaucahost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021https://www.biorxiv.org/content/10.1101/2021.07.20.453148v1López-Nandam et al. (preprint)
11
ScleractiniaAcroporidaeAcroporahyacinthushostspermgenomePacBio/Illumina/Omni-CPalumbi+Albright
elopez-nandam@calacademy.org
biorxiv2021
https://www.ncbi.nlm.nih.gov/assembly/GCA_020536085.1/ (You can download the associated gff3, proteins fasta, and other annotation files for this assembly here: https://drive.google.com/drive/u/1/folders/15dh6eE8q850frTRVtglndXtzxSwj673g)
https://www.biorxiv.org/content/10.1101/2021.07.20.453148v1López-Nandam et al. (preprint)
12
ScleractiniaAcroporidaeAcroporaintermediahost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
13
ScleractiniaAcroporidaeAcroporamuricatahost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
14
ScleractiniaAcroporidaeAcroporapalmatahost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
15
ScleractiniaAcroporidaeAcroporapulchrahost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
16
ScleractiniaAcroporidaeAcroporaspathulatahost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
17
ScleractiniaAcroporidaeAcroporavalidahost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
18
ScleractiniaAgariciidaeAgariciaagariciteshost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
19
ScleractiniaAcroporidaeAlveoporajaponicahost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
20
AlcyonaceaeGorgoniidaeAntillogorgiabipinnatahost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
21
ScleractiniaRhizangiidaeAstrangiapoculataNAhostholobiontgenomeshort read/ long read/ HiCBaumsbaums@psu.eduunpublished2021N/AN/A
22
ScleractiniaDendrophyllidaeBalanophylliaeuropaeahost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
23
ScleractiniaPlerogyridaeBlastomussamerletihost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
24
ScleractiniaPlerogyridaeBlastomussawellsiGCA_947652115.1host and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukpublished2023GCA_947652115.1
25
SuessialesSymbiodiniaceaeBreviolumminutumSSB01symbiontculturetranscriptomeGrossman
agrossman@carnegiescience.edu
publishedreleasedXiang et al. 2015, The Plant Journal
26
SuessialesSymbiodiniaceaeBreviolumaenigmaticummac04-487 symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleasedParkinson et al. 2016, Genome Biology and Evolution
27
SuessialesSymbiodiniaceaeBreviolumminutum
mac703, Mf1.05b, rt002, rt351 
symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleasedParkinson et al. 2016, Genome Biology and Evolution
28
SuessialesSymbiodiniaceaeBreviolumpseudominutumrt146symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleasedParkinson et al. 2016, Genome Biology and Evolution
29
SuessialesSymbiodiniaceaeBreviolumpsygmophilum
HIAp, Mf10.14b.02, PurPFlex, rt141 
symbiontculturetranscriptomeParkinsonjparkinson@usf.edupublishedreleasedParkinson et al. 2016, Genome Biology and Evolution
30
SuessialesSymbiodiniaceaeBreviolumminutumMf1.05bsymbiontculturegenomeSatohnorisky@oist.jppublishedreleasedShoguchi et al. 2013, Current Biology
31
SuessialesSymbiodiniaceaeBreviolumminutumMf1.05bsymbiontculturetranscriptomeVoolstra
christian.voolstra@uni-konstanz.de
publishedreleasedBayer et al. 2012, PLoS One
32
SuessialesSymbiodiniaceaeBreviolumfaviinorumsymbiontholobionttranscriptomeParkinsonjparkinson@usf.eduunpublishedParkinson et al. (unpublished)
33
SuessialesSymbiodiniaceaeBreviolumsp. B5symbiontholobionttranscriptomeParkinsonjparkinson@usf.eduunpublishedParkinson et al. (unpublished)
34
SuessialesSymbiodiniaceaeBreviolumpsygmophilumsymbiontculturegenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
35
SuessialesSymbiodiniaceaeBreviolumminutumsymbiontgenomeAranda
manuel.aranda@kaust.edu.sa
unpublishedAranda et al. (unpublished)
36
SuessialesSymbiodiniaceaeBreviolumpsygmophilumsymbiontculturegenomeParkinsonjparkinson@usf.eduunpublishedfirst half 2023Parkinson et al. (unpublished)
37
RhizostomeaeCassiopeidaeCassiopeafrondosahost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
38
SuessialesSymbiodiniaceaeCladocopiumsp.symbionttranscriptomeChanc.chan1@uq.edu.aupublishedreleasedGonzalez-Pech et al. 2016, Frontiers in Marine Science
39
SuessialesSymbiodiniaceaeCladocopiumsp.symbiontholobionttranscriptomeshort readDaviesdaviessw@gmail.compublishedreleasedhttp://sites.bu.edu/davieslab/files/2017/11/CladeC_Symbiodinium_transcriptome.zip
https://www.frontiersin.org/articles/10.3389/fmars.2018.00150/full
40
SuessialesSymbiodiniaceaeCladocopiumsp.symbionttranscriptomeDaviesdaviessw@gmail.compublishedreleasedDavies et al. 2016, Frontiers in Marine Science
41
SuessialesSymbiodiniaceaeCladocopiumgoreaui
MMETSP1367, MMETSP1369
symbiontculturetranscriptomeKeelingpkeeling@mail.ubc.capublishedreleasedKeeling et al. 2014, PLoS Biology
42
SuessialesSymbiodiniaceaeCladocopiumsp.MMETSP1370-1symbiontculturetranscriptomeKeelingpkeeling@mail.ubc.capublishedreleasedKeeling et al. 2014, PLoS Biology
43
SuessialesSymbiodiniaceaeCladocopiumsp.symbionttranscriptomePalumbispalumbi@stanford.edupublishedreleasedLadner et al. 2012, BMC Evolutionary Biology
44
SuessialesSymbiodiniaceaeCladocopiumsp. C3symbiontgenomeSatohnorisky@oist.jppublishedreleasedShoguchi et al. 2018, BMC Genomics
45
SuessialesSymbiodiniaceaeCladocopiumgoreauisymbiontgenomeVoolstra
christian.voolstra@uni-konstanz.de
publishedreleasedLiu et al. 2018, Communications Biology
46
SuessialesSymbiodiniaceaeCladocopiumthermophilumsymbiontgenomeVoolstra
christian.voolstra@uni-konstanz.de
publishedreleasedVoolstra et al. (unpublished)
47
SuessialesSymbiodiniaceaeCladocopiumgoreauiMI-SCF055symbiontculturetranscriptomevan Oppen
madeleine.van@unimelb.edu.au
publishedreleasedLevin et al. 2016, Molecular Biology and Evolution
48
SuessialesSymbiodiniaceaeCladocopiumgoreauiWSYsymbiontculturetranscriptomevan Oppen
madeleine.van@unimelb.edu.au
publishedreleasedLevin et al. 2016, Molecular Biology and Evolution
49
SuessialesSymbiodiniaceaeCladocopiumC15symbiontculturegenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
50
SuessialesSymbiodiniaceaeCladocopiumgoreauisymbiontculturegenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
51
SuessialesSymbiodiniaceaeCladocopiumgoreauiSCF055symbiontculturegenomeshort reads + long readsChanc.chan1@uq.edu.auunpublishedChan et al. (unpublished)
52
SuessialesSymbiodiniaceaeCladocopiuminfistulumrt203symbiontculturegenomeParkinsonjparkinson@usf.eduunpublishedfirst half 2022Parkinson et al. (unpublished)
53
ScleractiniaFaviidaeColpophyllianatanshost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
54
ScleractiniaMerulinidaeCyphastrea salaehostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.com
publishedhttps://link.springer.com/article/10.1007/s11033-021-06251-xAlidoost Salimi et al. 2021, Mol Biol Rep.
55
ScleractiniaMeandrinidaeDendrogyracylindrushost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
56
ScleractiniaFaviidaeDiplorialabyrinthiformishost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
57
SuessialesSymbiodiniaceaeDurusdiniumtrenchiiMMETSP1377symbiontculturetranscriptomeKeelingpkeeling@mail.ubc.capublishedreleasedKeeling et al. 2014, PLoS Biology
58
SuessialesSymbiodiniaceaeDurusdiniumtrenchiisymbionttranscriptomePalumbispalumbi@stanford.edupublishedreleasedLadner et al. 2012, BMC Evolutionary Biology
59
SuessialesSymbiodiniaceaeDurusdiniumtrenchiiCCMP2556symbiontculturegenomeRodriguez-Lanettyrodmauri@fiu.edupublishedreleasedRodriguez-Lanetty et al. (unpublished)
60
SuessialesSymbiodiniaceaeDurusdiniumtrenchiisymbiontgenomeSatohnorisky@oist.jppublishedreleased
61
SuessialesSymbiodiniaceaeDurusdiniumtrenchiisymbiontculturegenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
62
SuessialesSymbiodiniaceaeDurusdiniumtrenchiiA001symbiontculturegenomeChan/Suggettc.chan1@uq.edu.auunpublished
63
SuessialesSymbiodiniaceaeDurusdiniumtrenchiisymbiontgenomeSuggett
David.Suggett@uts.edu.au
unpublishedSuggett et al. (unpublished)
64
ScleractiniaMerulinidaeEchinoporalamellosahost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
65
SuessialesSymbiodiniaceaeEffreniumvoratumCCMP421free-livingculturegenome10X Genomics linked readsRodriguez-Lanetty/Chanc.chan1@uq.edu.auunpublishedChan et al. (unpublished)
66
SuessialesSymbiodiniaceaeEffreniumvoratumRCC1521free-livingculturegenomeshort reads + long readsChanc.chan1@uq.edu.auunpublished
67
SuessialesSymbiodiniaceaeEffreniumvoratumrt-383free-livingculturegenomeshort reads + long readsChanc.chan1@uq.edu.auunpublished
68
SuessialesSymbiodiniaceaeEffreniumsp.
CCMP421 (MMETSP1122-5)
symbiontculturetranscriptomeKeelingpkeeling@mail.ubc.capublishedreleasedKeeling et al. 2014, PLoS Biology
69
SuessialesSymbiodiniaceaeEffreniumvoratumsymbiontculturegenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
70
MalacalcyonaceaePlexauridaeEuniceaknightihost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
71
ScleractiniaMerulinidaeFavites pentagonahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.com
publishedhttps://link.springer.com/article/10.1007/s11033-021-06251-xAlidoost Salimi et al. 2021, Mol Biol Rep.
72
CardiidaCardiidaeFragumfragumGCA_946902895host and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
published2023GCA_946902895
73
CardiidaCardiidaeFragumsueziensehost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
74
CardiidaCardiidaeFragumwhitleyiGCA_948146395host and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
published2023GCA_948146395
75
SuessialesSymbiodiniaceaeFreudenthalidiumendolithicumsymbiontculturegenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
76
SuessialesSymbiodiniaceaeFreudenthalidiumheronensesymbiontculturegenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
77
SuessialesSymbiodiniaceaeFreudenthalidiumsp.symbiontculturegenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
78
SuessialesSymbiodiniaceaeFugaciumkawagutii
CCMP2468 (MMETSP0132_2C)
symbiontculturetranscriptomeKeelingpkeeling@mail.ubc.capublishedreleasedKeeling et al. 2014, PLoS Biology
79
SuessialesSymbiodiniaceaeFugaciumkawagutiiCCMP2468 symbiontculturegenomeLinsenjie.lin@uconn.edupublishedreleasedLin et al. 2015, Science
80
SuessialesSymbiodiniaceaeFugaciumkawagutiiCCMP2468symbiontculturegenomeVoolstra
christian.voolstra@uni-konstanz.de
publishedreleasedLiu et al. 2018, Communications Biology
81
SuessialesSymbiodiniaceaeFugaciumkawagutiisymbiontculturegenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
82
ScleractiniaEuphylliidaeGalaxeaacrheliaNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleasedhttps://dornsife.usc.edu/labs/carlslab/data/
https://academic.oup.com/gigascience/article/6/9/gix074/4091589
83
ScleractiniaEuphylliidaeGalaxeaastreataNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleasedhttps://dornsife.usc.edu/labs/carlslab/data/
https://academic.oup.com/gigascience/article/6/9/gix074/4091589
84
ScleractiniaEuphylliidaeGalaxeafascicularisGCA_948470475.1host and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukpublished2023GCA_948470475.1
85
SuessialesSymbiodiniaceaeGerakladiumendoclionumsymbiontholobionttranscriptomeStrehlow
strehow@biology.sdu.dsk
publishedreleasedStrehlow et al. 2020 Coral Reefs
86
SuessialesSymbiodiniaceaeGerakladiumsp.symbiontculturegenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
87
ScleractiniaMerulinidaeGoniastrearetiformishost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
88
ScleractiniaPoritidaeGonioporacolumnaNAhostholobionttranscriptomeshort readKenkelckenkel@usc.edupublishedreleasedhttps://dornsife.usc.edu/labs/carlslab/data/
https://academic.oup.com/gigascience/article/6/9/gix074/4091589
89
ScleractiniaPoritidaeGonioporacolumnahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.com
publishedhttps://link.springer.com/article/10.1007/s11033-021-06251-xAlidoost Salimi et al. 2021, Mol Biol Rep.
90
ScleractiniaPoritidaeGonioporadjiboutiensishostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.com
publishedhttps://link.springer.com/article/10.1007/s11033-021-06251-xAlidoost Salimi et al. 2021, Mol Biol Rep.
91
SuessialesSymbiodiniaceaeHalluxiumpauxillumsymbiontculturegenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
92
ScleractiniaAgariciidaeHelioseriscucullatahostholobiontgenomePacBio
Bongaerts, Hernandez-Agreda
alejhernandez@calacademy.org
unpublished2023
93
CardiidaCardiidaeHippopushippopusGCA_946811185host and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
published2023GCA_946811185
94
ScleractiniaAcroporidaeIsoporapaliferahost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
95
ScleractiniaAgariciidaeLeptoserisscabrahost and symbiontholobiontgenomePacBio / Omni-CBarshis, Radicebarshis@gmail.comunpublished2023mesophotic; American Sāmoa
96
ScleractiniaMeandrinidaeMeandrinameandriteshost and symbiontholobiontgenomeshort read / long read / Hi-CLopezjoslo@nova.eduunpublished2021
97
ScleractiniaMeandrinidaeMeandrinameandriteshost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
98
ScleractiniaMeandrinidaeMeandrinameandriteshost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?
99
ScleractiniaLobophyllidaeMicromussalordhowensishost and symbiontholobiontgenomeshort read / long read / Hi-C
Sweet / Coral Genome Project
M.Sweet@derby.ac.ukunpublished2021
100
AnthoathecataMilleporidaeMilleporaalcicornishost and symbiontholobiontgenomeshort read / long read / Hi-C
Lopez / Photosymbiosis in Marine Animals (ASG Project)
unpublished?