ABCDEFGHIJKLMNOPQRSTUVWXYZAAABACADAE
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familygenusspeciesstrainpartner_typetissue_sourceresource_typemethodsresearch_groupcontactpublication_status
anticipated_release_date
data_linkpublication_linkpublication_referencenotes
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ScleractiniaAcroporidaeAcroporamilleporaNAhostholobiontgenome
PacBio / 10x genomics / Illumina
Matz, Przeworski
matz@utexas.edu, mp3284@columbia.edu
publishedreleased
https://www.dropbox.com/s/hezqx79m3fk1l8e/Amil_v2.01_annotated.zip?dl=0
https://doi.org/10.1126/science.aba4674
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ScleractiniaAcroporidaeAcroporacervicornisNAhostholobiont/spermgenomeshort read/ long readBaumsbaums@psu.eduunpublishedMid 2021N/AN/A
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ScleractiniaAcroporidaeAcroporapalmataNAhostholobiont/spermgenomeshort read/ long read/ HiCBaumsbaums@psu.eduunpublishedMid 2021N/AN/A
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ScleractiniaAcroporidaeAcroporaclathratahostgenomeshort read
Allen Chen' Lab/Parisa Alidoost Salimi
P_Alidoostsalimi@yahoo.comunpublishedAlidoost Salimi et al. (unpublished)
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ScleractiniaAcroporidaeAcroporadowningihostgenomeshort read
Allen Chen' Lab/Parisa Alidoost Salimi
P_Alidoostsalimi@yahoo.comunpublishedAlidoost Salimi et al. (unpublished)
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ScleractiniaAcroporacervicornishost and symbiontholobiontgenomeshort read / long read / Hi-CLopezjoslo@nova.eduunpublished2021
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ScleractiniaAcroporacervicornishost and symbiontholobiontgenomeshort read / long read / Hi-CLopezjoslo@nova.eduunpublished2021
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ScleractiniaAcroporacythereahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaAcroporahyacinthushostspermgenomePacBio/Illumina/Omni-CPalumbi+Albright
elopez-nandam@calacademy.org
biorxiv2021
https://www.ncbi.nlm.nih.gov/assembly/GCA_020536085.1/ (You can download the associated gff3, proteins fasta, and other annotation files for this assembly here: https://drive.google.com/drive/u/1/folders/15dh6eE8q850frTRVtglndXtzxSwj673g)
https://www.biorxiv.org/content/10.1101/2021.07.20.453148v1López-Nandam et al. (preprint)
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ScleractiniaAcroporaintermediahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaAcroporamuricatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
13
ScleractiniaAcroporapalmatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
14
ScleractiniaAcroporapulchrahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaAcroporaspathulatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaAcroporavalidahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaAgariciaagariciteshost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaAlveoporajaponicahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaRhizangiidaeAstrangiapoculataNAhostholobiontgenomeshort read/ long read/ HiCBaumsbaums@psu.eduunpublished2021N/AN/A
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ScleractiniaBalanophylliaeuropaeahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaBlastomussamerletihost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaBlastomussawellsihost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaColpophyllianatanshost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaMerulinidaeCyphastrea microphthalmahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
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ScleractiniaDendrogyracylindrushost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaDiplorialabyrinthiformishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaEchinoporalamellosahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaMerulinidaeFavites pentagonahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
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ScleractiniaGalaxeafascicularishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaGoniastrearetiformishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaPoritidaeGonioporacolumnahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
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ScleractiniaPoritidaeGonioporadjiboutiensishostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
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ScleractiniaIsoporabrueggemannihost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaMeandrinameandriteshost and symbiontholobiontgenomeshort read / long read / Hi-CLopezjoslo@nova.eduunpublished2021
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ScleractiniaMeandrinameandriteshost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaMicromussalordhowensishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaFaviidaeMontastraeacavernosaNAhostholobiontgenomePacBio / 10x genomicsMatzmatz@utexas.edupublishedreleased
https://www.dropbox.com/s/yfqefzntt896xfz/Mcavernosa_genome.tgz
https://doi.org/10.1111/mec.15931 Rippe et al 2021, Molecular Ecology
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ScleractiniaMontastraeacavernosahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaAcroporidaeMontiporacapitatahostspermgenomePacBio, hybridBhattacharya, Putnamhputnam@uri.edupublishedreleased
http://cyanophora.rutgers.edu/montipora/
https://www.nature.com/articles/s41598-019-39274-3Shumaker et al 2019
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ScleractiniaMontiporacapitatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaMontiporadigitatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaMussismiliabrasiliensishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaMussismiliahispidahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaOculinaarbusculahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaOculinapatagoniahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaOculinavaricosahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
https://www.ncbi.nlm.nih.gov/sra/SRX6096996[accn]
https://doi.org/10.3389/fmars.2019.00662
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ScleractiniaOculinapatagonicahost and symbiontholobiontgenomeshort read IlluminaTali Masstmass@univ.haifa.ac.ilunpublished2021From Israel
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ScleractiniaOrbicellaannularishostspermgenomeshort read / long read / Hi-CLopezjoslo@nova.eduunpublished2021
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ScleractiniaOrbicellafaveolatahostspermgenomeshort read / long read / Hi-CLopezjoslo@nova.eduunpublished2021
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ScleractiniaOrbicellaarbusculahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
58
ScleractiniaOrbicellafranksihostspermgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
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ScleractiniaOrbicellaradianshost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
60
ScleractiniaAgariciidaePavonacactushostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
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ScleractiniaAgariciidaePavonadecussatahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
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ScleractiniaMerulinidaePlatygyradaedaleahostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
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ScleractiniaPocilloporidaePocilloporadamicornishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
66
ScleractiniaPocilloporidaePocilloporagrandishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
68
ScleractiniaPocilloporidaePocillopora meandrinahostholobiontgenomePacBio, hybridBhattacharya, Putnamhputnam@uri.eduunpublished2021
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ScleractiniaPocilloporidaePocillopora acutahostholobiontgenomePacBio, hybridBhattacharya, Putnamhputnam@uri.eduunpublished
75
ScleractiniaPoritidaePoritesastreoideshostholobiontgenomePacBio, hybridPutnamhputnam@uri.eduunpublished2021
76
ScleractiniaPoritidaePoritescompressahostspermgenomePacBio, hybridBhattacharya, Putnamhputnam@uri.eduunpublishedreleased
77
ScleractiniaPoritidaePoritesharrisonihostgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.comunpublished
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ScleractiniaPoritescylindricahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
79
ScleractiniaPoritesrushost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
80
ScleractiniaPseudodiploriastrigosahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
82
ScleractiniaPocilloporidaeSeriatoporahystrixhost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
84
ScleractiniaSiderastreidaeSiderastreasavignyanahostholobiontgenomeshort read
Parisa Alidoost Salimi/Pargol Ghavam Mostafavi
P_Alidoostsalimi@yahoo.compublished
https://link.springer.com/article/10.1007/s11033-021-06251-x
Alidoost Salimi et al. 2021, Mol Biol Rep.
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ScleractiniaSiderastreasidereahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
86
ScleractiniaSiderastreastellatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
87
ScleractiniaStephanocoeniainterseptahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
88
ScleractiniaStylophorasubseriatahost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
89
ScleractiniaTurbinariareniformishost and symbiontholobiontgenomeshort read / long read / Hi-CSweet / Coral Genome ProjectM.Sweet@derby.ac.ukunpublished2021
91
ScleractiniaAcroporidaeMontiporagriseahost and symbiontholobiontgenomePacBio / Omni-CBarshis, Radicebarshis@gmail.comunpublished2023
mesophotic; American Sāmoa
92
ScleractiniaAgariciidaeLeptoserisscabrahost and symbiontholobiontgenomePacBio / Omni-CBarshis, Radicebarshis@gmail.comunpublished2023
mesophotic; American Sāmoa
93
ScleractiniaAgariciidaeHelioseriscucullatahostholobiontgenomePacBioBongaerts, Hernandez-Agreda
alejhernandez@calacademy.org
unpublished2023
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