ABCDEFGHIJKLMNOPQRSTUVWXYZAAABACADAEAFAGAHAIAJAKALAMANAOAPAQARASATAUAVAWAXAYAZBABBBCBDBEBFBGBHBIBJBKBLBMBNBOBPBQBRBSBTBUBVBWBXBYBZCACBCCCDCECFCGCHCICJCKCL
1
Citation
fungi_or_bacteria
DNA_dependentSurvey
Seqs_avail?
CulturesSequenced
CulturingConducted
platformOTU_table?marker
multipleMarkers?
Host_familyHost_taxon
taxonomyChecked
woody
herbaceous
graminoid
succulent
aquatic(submerged)
nonVascular
annual_or_multiyear
clade:angiosperms
clade:gymnosperms
clade:ferns
clade:lycopodes
clade:mosses
clade:hornworts
clade:liverworts
algae/rhodophyta
leafstemrootflowerpropagulehostvouchers
CultureVouchers
spatialReptemporalRepalpinemangrovesborealdesertsdunes
floodedGrasslands
fynbos
MontaneGrassScrub
TempBroadleafMixed
TempConifTempGrassTropConif
TropDryBroadleaf
TropWetBroadleaf
TropGrass
MeditteraneanForestScrub
Tundra/arctic
cultivatedLandscape
aquaticcity, countryGPS
4
Blaalid, Rakel, et al. "Arctic root‐associated fungal community composition reflects environmental filtering." Molecular ecology 23.3 (2014): 649-659.
fungiyesyesno454yesITS1noPolygonaceaeBistorta viviparayesyesmultiyearyesyesnoNAyesnoyes78.53,16.0377.53,18.1879.08,11.7279.61,13.45
24
Johansson, V. A., Bahram, M., Tedersoo, L., Kõljalg, U., & Eriksson, O. (2017). Specificity of fungal associations of Pyroleae and Monotropa hypopitys during germination and seedling development. Molecular Ecology.
fungiyesyesno454yesITS5noEricaceaeChimaphila umbellatayesyesmultiyearyesyesnoNAyesnoyes56.66,16.64
25
Johansson, V. A., Bahram, M., Tedersoo, L., Kõljalg, U., & Eriksson, O. (2017). Specificity of fungal associations of Pyroleae and Monotropa hypopitys during germination and seedling development. Molecular Ecology.
fungiyesyesno454yesITS4noEricaceae
Moneses uniflora Chimaphila umbellata
yesmultiyearyesyesnoNAyesnoyes56.66,16.64
26
Johansson, V. A., Bahram, M., Tedersoo, L., Kõljalg, U., & Eriksson, O. (2017). Specificity of fungal associations of Pyroleae and Monotropa hypopitys during germination and seedling development. Molecular Ecology.
fungiyesyesno454yesITS2noEricaceaePyrola chloranthayesmultiyearyesyesnoNAyesnoyes56.66,16.64
27
Johansson, V. A., Bahram, M., Tedersoo, L., Kõljalg, U., & Eriksson, O. (2017). Specificity of fungal associations of Pyroleae and Monotropa hypopitys during germination and seedling development. Molecular Ecology.
fungiyesyesno454yesITS3noEricaceaePyrola rotundifoliayesmultiyearyesyesnoNAyesnoyes56.66,16.64
33
Kohout, P., Bahram, M., Põlme, S., & Tedersoo, L. (2017). Elevation, space and host plant species structure Ericaceae root-associated fungal communities in Papua New Guinea. Fungal Ecology, 30, 112-121.
fungiyesyesNAno454yesITSnoHypericaceaeHypericum papuanumyesmultiyearyesyesnoNAyesnoyes-5.78,145.1-5.78,145.05.79,145.7
37
Manter, D. K., Delgado, J. A., Holm, D. G., & Stong, R. A. (2010). Pyrosequencing reveals a highly diverse and cultivar-specific bacterial endophyte community in potato roots. Microbial ecology, 60(1), 157-166.
bacteriayesyesno454yes16snoSolanaceaeSolanum tuberosumyesmultiyearyesyesyesNAnonoyes37.43,-106.9
42
Qin, Y., Pan, X., & Yuan, Z. (2016). Seed endophytic microbiota in a coastal plant and phytobeneficial properties of the fungus Cladosporium cladosporioides. Fungal Ecology, 24, 53-60.
fungiyesyesyesyes454yesITSyesAmaranthaceaeSuaeda salsayes
annual/biennial
yesyesnonononoyes37.40,118.92
43
Romero, F. M., Marina, M., & Pieckenstain, F. L. (2014). The communities of tomato (Solanum lycopersicum L.) leaf endophytic bacteria, analyzed by 16S-ribosomal RNA gene pyrosequencing. FEMS microbiology letters, 351(2), 187-194.
bacteriayesnoNAno454yes16snoSolanaceaeSolanum lycopersicumyes
annual/biennial
yesyesnoNAnonoyes-34.92,-57.95
44
Sánchez-López, A. S., Thijs, S., Beckers, B., González-Chávez, M. C., Weyens, N., Carrillo-González, R., & Vangronsveld, J. (2017). Community structure and diversity of endophytic bacteria in seeds of three consecutive generations of Crotalaria pumila growing on metal mine residues. Plant and Soil, 1-16.
bacteriayesyesno454yes16snoFabaceaeCrotalaria pumilayes
annual/biennial
yesyesnoNAnoyesyes20.74,-99.40
51
Yu, X., Yang, J., Wang, E., Li, B., & Yuan, H. (2015). Effects of growth stage and fulvic acid on the diversity and dynamics of endophytic bacterial community in Stevia rebaudiana Bertoni leaves. Frontiers in microbiology, 6.
bacteriayesyesNAno454yes16syesAsteraceaeStevia rebaudianayesmultiyearyesyesyesNAnonoyes40.14,116.18
62
Khalaf, E. M., & Raizada, M. N. (2016). Taxonomic and functional diversity of cultured seed associated microbes of the cucurbit family. BMC microbiology, 16(1), 131.
bacterianoNAyesyes
3730 DNA analyzer
yes16snoCucurbitaceaeCucumis meloyes
annual/biennial
yesyesyesnoyesnoyes
Various locations in N. and S. America (no coordinates, but map on Fig. 1)
NA
63
Khalaf, E. M., & Raizada, M. N. (2016). Taxonomic and functional diversity of cultured seed associated microbes of the cucurbit family. BMC microbiology, 16(1), 131.
bacterianoNAyesyes
3731 DNA analyzer
yes16snoCucurbitaceaeCucumis sativusyes
annual/biennial
yesyesyesnoyesnoyes
Various locations in N. and S. America (no coordinates, but map on Fig. 1)
NA
64
Khalaf, E. M., & Raizada, M. N. (2016). Taxonomic and functional diversity of cultured seed associated microbes of the cucurbit family. BMC microbiology, 16(1), 131.
bacterianoNAyesyes
3732 DNA analyzer
yes16snoCucurbitaceaeCitrullus lanatusyes
annual/biennial
yesyesyesnoyesnoyes
Various locations in N. and S. America (no coordinates, but map on Fig. 1)
NA
65
Khalaf, E. M., & Raizada, M. N. (2016). Taxonomic and functional diversity of cultured seed associated microbes of the cucurbit family. BMC microbiology, 16(1), 131.
bacterianoNAyesyes
3733 DNA analyzer
yes16snoCucurbitaceaeLagenaria sicerariayes
annual/biennial
yesyesyesnoyesnoyes
Various locations in N. and S. America (no coordinates, but map on Fig. 1)
NA
66
Khalaf, E. M., & Raizada, M. N. (2016). Taxonomic and functional diversity of cultured seed associated microbes of the cucurbit family. BMC microbiology, 16(1), 131.
bacterianoNAyesyes
3734 DNA analyzer
yes16snoCucurbitaceaeLuffa acutangulayes
annual/biennial
yesyesyesnoyesnoyes
Various locations in N. and S. America (no coordinates, but map on Fig. 1)
NA
67
Khalaf, E. M., & Raizada, M. N. (2016). Taxonomic and functional diversity of cultured seed associated microbes of the cucurbit family. BMC microbiology, 16(1), 131.
bacterianoNAyesyes
3735 DNA analyzer
yes16snoCucurbitaceaeCucurbita moschatayes
annual/biennial
yesyesyesnoyesnoyes
Various locations in N. and S. America (no coordinates, but map on Fig. 1)
NA
68
Khalaf, E. M., & Raizada, M. N. (2016). Taxonomic and functional diversity of cultured seed associated microbes of the cucurbit family. BMC microbiology, 16(1), 131.
bacterianoNAyesyes
3736 DNA analyzer
yes16snoCucurbitaceaeCucurbita pepoyes
annual/biennial
yesyesyesnoyesnoyes
Various locations in N. and S. America (no coordinates, but map on Fig. 1)
NA
141
Higgins, K. L., Arnold, A. E., Miadlikowska, J., Sarvate, S. D., & Lutzoni, F. (2007). Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages. Molecular phylogenetics and evolution, 42(2), 543-555.
funginoyesyesyesABI 3702yes
ITS, LSU, SSu
yesLycopodiaceaeHuperzia selagoyesyesmultiyearyesyesnoyesyesnoyes54.8,-66.850.3,-63.663.8,-68.5
151
Tao, G., et al. "Whole rDNA analysis reveals novel and endophytic fungi in Bletilla ochracea (Orchidaceae)." Fungal Divers 33 (2008): 101-122.
fungiyesyesno
ABI 3730, DGGE
yesITSyesOrchidaceaeBletilla ochraceayesyesmultiyearyesyesyesnoNAnonoyes26.30,106.27
170
García, Elena, et al. "The endophytic mycobiota of Arabidopsis thaliana."Fungal Diversity 60.1 (2013): 71-89.
funginoyesyesyesABI PrismyesITSyesBrassicaceaeArabidopsis thalianayesyes
annual/biennial
yesyesyesnonoyesyesyes41.22,-4.5840.87,-3.8940.49,-3.8839.79,-4.1739.64,-4.2839.56,-3.93
172
Shubin, L., Juan, H., RenChao, Z., ShiRu, X., & YuanXiao, J. (2014). Fungal endophytes of Alpinia officinarum rhizomes: insights on diversity and variation across growth years, growth sites, and the inner active chemical concentration. PloS one, 9(12), e115289.
fungiyesyesnoABI PrismyesITSyesZingiberaceaeAlpinia officinarumyesyesmultiyearyesyesnoNAyesnoyes
20.2831,110.2089
18.7350,110.2328
23.1800,113.3647
22.5311,108.3922.8792,112.389
24.7206,118.475
25.1433,102.7420.4528,110.36
175
Khalmuratova, I., Kim, H., Nam, Y. J., Oh, Y., Jeong, M. J., Choi, H. R., ... & Yoon, H. (2015). Diversity and plant growth promoting capacity of endophytic fungi associated with halophytic plants from the west coast of Korea. Mycobiology, 43(4), 373-383.
funginoNAyesyes
ABI PRISM 310 DNA Sequencer
yesITSyesAmaranthaceaeSuaeda maritimayes
annual/biennial
yesyesnonononoyes35.4,126.23
176
Khalmuratova, I., Kim, H., Nam, Y. J., Oh, Y., Jeong, M. J., Choi, H. R., ... & Yoon, H. (2015). Diversity and plant growth promoting capacity of endophytic fungi associated with halophytic plants from the west coast of Korea. Mycobiology, 43(4), 373-383.
funginoNAyesyes
ABI PRISM 310 DNA Sequencer
yesITSyesPlumbaginaceaeLimonium tetragonumyesmultiyearyesyesnonononoyes35.4,126.22
177
Khalmuratova, I., Kim, H., Nam, Y. J., Oh, Y., Jeong, M. J., Choi, H. R., ... & Yoon, H. (2015). Diversity and plant growth promoting capacity of endophytic fungi associated with halophytic plants from the west coast of Korea. Mycobiology, 43(4), 373-383.
funginoNAyesyes
ABI PRISM 310 DNA Sequencer
yesITSyesAmaranthaceaeSuaeda australisyes
annual/biennial
yesyesnonononoyes35.4,126.22
347
Jin, H., Yan, Z., Liu, Q., Yang, X., Chen, J., & Qin, B. (2013). Diversity and dynamics of fungal endophytes in leaves, stems and roots of Stellera chamaejasme L. in northwestern China. Antonie Van Leeuwenhoek, 104(6), 949-963.
funginoNAyesyes
ABI-Prism 377 sequencer
yesITSyesThymelaeaceaeStellera chamaejasmeyesmultiyearyesyesyesyesnoyesnonoyes35.56,104.08
354
Del Olmo-Ruiz, M., & Arnold, A. E. (2014). Interannual variation and host affiliations of endophytic fungi associated with ferns at La Selva, Costa Rica. Mycologia, 106(1), 8-21.
funginoyesyesyes
Applied Biosystems 3730
yes
ITS1, ITS2, 5.8S, LSU
yesDryopteridaceae
Bolbitis portoricensisyesyesmultiyearyesyesyesyesyesyesyes10.43,-83.98
355
Del Olmo-Ruiz, M., & Arnold, A. E. (2014). Interannual variation and host affiliations of endophytic fungi associated with ferns at La Selva, Costa Rica. Mycologia, 106(1), 8-21.
funginoyesyesyes
Applied Biosystems 3730
yes
ITS1, ITS2, 5.8S, LSU
yes
Lomariopsidaceae
Cyclopeltis semicordata
yesyesmultiyearyesyesyesyesyesyesyes10.43,-83.98
356
Del Olmo-Ruiz, M., & Arnold, A. E. (2014). Interannual variation and host affiliations of endophytic fungi associated with ferns at La Selva, Costa Rica. Mycologia, 106(1), 8-21.
funginoyesyesyes
Applied Biosystems 3730
yes
ITS1, ITS2, 5.8S, LSU
yesDryopteridaceae
Elaphoglossum doanense
yesyesmultiyearyesyesyesyesyesyesyes10.43,-83.98
357
Del Olmo-Ruiz, M., & Arnold, A. E. (2014). Interannual variation and host affiliations of endophytic fungi associated with ferns at La Selva, Costa Rica. Mycologia, 106(1), 8-21.
funginoyesyesyes
Applied Biosystems 3730
yes
ITS1, ITS2, 5.8S, LSU
yes
Lomariopsidaceae
Nephrolepis biserratayesmultiyearyesyesyesyesyesyesyes10.43,-83.98
358
Del Olmo-Ruiz, M., & Arnold, A. E. (2014). Interannual variation and host affiliations of endophytic fungi associated with ferns at La Selva, Costa Rica. Mycologia, 106(1), 8-21.
funginoyesyesyes
Applied Biosystems 3730
yes
ITS1, ITS2, 5.8S, LSU
yesOleandraceaeOleandra articulatayesmultiyearyesyesyesyesyesyesyes10.43,-83.98
359
Del Olmo-Ruiz, M., & Arnold, A. E. (2014). Interannual variation and host affiliations of endophytic fungi associated with ferns at La Selva, Costa Rica. Mycologia, 106(1), 8-21.
funginoyesyesyes
Applied Biosystems 3730
yes
ITS1, ITS2, 5.8S, LSU
yesPolypodiaceae
Phlebodium pseudoaureum
yesmultiyearyesyesyesyesyesyesyes10.43,-83.98
360
Del Olmo-Ruiz, M., & Arnold, A. E. (2014). Interannual variation and host affiliations of endophytic fungi associated with ferns at La Selva, Costa Rica. Mycologia, 106(1), 8-21.
funginoyesyesyes
Applied Biosystems 3730
yes
ITS1, ITS2, 5.8S, LSU
yesTectariaceaeTectaria athyrioidesyesmultiyearyesyesyesyesyesyesyes10.43,-83.98
389
U’Ren, J. M., Lutzoni, F., Miadlikowska, J., & Arnold, A. E. (2010). Community analysis reveals close affinities between endophytic and endolichenic fungi in mosses and lichens. Microbial ecology, 60(2), 340-353.
funginoyesyesyes
Applied Biosystems 3730xl DNA Analyzer
yesLSU, ITSyesDryopteridaceae
Woodsia plummeraeyesmultiyearyesyesyesyesnonoyes31.53,-109.12
397
U’Ren, Jana M., et al. "Host and geographic structure of endophytic and endolichenic fungi at a continental scale." American Journal of Botany 99.5 (2012): 898-914.
funginoyesyesyes
Applied Biosystems 3730xl DNA Analyzer
yesLSU, ITSyes
RosaceaeDryas octopetalayesyesmultiyearyesyesnoyesyesnoyes65.27,-163.9662.6,-146.0435.34,-82.7531.93,-109.3827.19,-81.34
400
U’Ren, Jana M., et al. "Host and geographic structure of endophytic and endolichenic fungi at a continental scale." American Journal of Botany 99.5 (2012): 898-914.
funginoyesyesyes
Applied Biosystems 3730xl DNA Analyzer
yesLSU, ITSyes
EquisetaceaeEquisetum arvenseyesyesmultiyearyesyesnoyesyesnoyes65.27,-163.9662.6,-146.0435.34,-82.7531.93,-109.3827.19,-81.34
403
U’Ren, Jana M., et al. "Host and geographic structure of endophytic and endolichenic fungi at a continental scale." American Journal of Botany 99.5 (2012): 898-914.
funginoyesyesyes
Applied Biosystems 3730xl DNA Analyzer
yesLSU, ITSyes
LycopodiaceaeHuperzia selagoyesyes
multiyearyesyesnoyesyesnoyes65.27,-163.9662.6,-146.0435.34,-82.7531.93,-109.3827.19,-81.34
425
U’Ren, Jana M., et al. "Host and geographic structure of endophytic and endolichenic fungi at a continental scale." American Journal of Botany 99.5 (2012): 898-914.
funginoyesyesyes
Applied Biosystems 3730xl DNA Analyzer
yesLSU, ITSyes
SelaginellaceaeSelaginella arenicolayesmultiyearyesyesnoyesyesnoyes65.27,-163.9662.6,-146.0435.34,-82.7531.93,-109.3827.19,-81.34
426
U’Ren, Jana M., et al. "Host and geographic structure of endophytic and endolichenic fungi at a continental scale." American Journal of Botany 99.5 (2012): 898-914.
funginoyesyesyes
Applied Biosystems 3730xl DNA Analyzer
yesLSU, ITSyes
SelaginellaceaeSelaginella tortipilayesmultiyearyesyesnoyesyesnoyes65.27,-163.9662.6,-146.0435.34,-82.7531.93,-109.3827.19,-81.34
427
U’Ren, Jana M., et al. "Host and geographic structure of endophytic and endolichenic fungi at a continental scale." American Journal of Botany 99.5 (2012): 898-914.
funginoyesyesyes
Applied Biosystems 3730xl DNA Analyzer
yesLSU, ITSyes
ArecaceaeSerenoa repensyesmultiyearyesyesnoyesyesnoyes65.27,-163.9662.6,-146.0435.34,-82.7531.93,-109.3827.19,-81.34
428
U’Ren, Jana M., et al. "Host and geographic structure of endophytic and endolichenic fungi at a continental scale." American Journal of Botany 99.5 (2012): 898-914.
funginoyesyesyes
Applied Biosystems 3730xl DNA Analyzer
yesLSU, ITSyes
BromeliaceaeTillandsia usneoidesyesmultiyearyesyesnoyesyesnoyes65.27,-163.9662.6,-146.0435.34,-82.7531.93,-109.3827.19,-81.34
432
U’Ren, Jana M., et al. "Host and geographic structure of endophytic and endolichenic fungi at a continental scale." American Journal of Botany 99.5 (2012): 898-914.
funginoyesyesyes
Applied Biosystems 3730xl DNA Analyzer
yesLSU, ITSyes
Dryopteridaceae
Woodsia plummeraeyesmultiyearyesyesnoyesyesnoyes65.27,-163.9662.6,-146.0435.34,-82.7531.93,-109.3827.19,-81.34
434
Lledó, S., et al. "Endophytic mycobiota associated with Trifolium subterraneum growing under semiarid conditions." Annals of Applied Biology(2015).
funginoyesyesyes
Applied Biosystems 4-capillary 3130
yesITSyesFabaceae
Trifolium subterraneum
yesmultiyearyesyesyesnonoyesnoyes39.48,-6.3738.88,-6.97
441
Zheng, Y. K., Miao, C. P., Chen, H. H., Huang, F. F., Xia, Y. M., Chen, Y. W., & Zhao, L. X. (2016). Endophytic fungi harbored in Panax notoginseng: diversity and potential as biological control agents against host plant pathogens of root-rot disease. Journal of Ginseng Research.
funginoNAyesyes
BIPrism 3730 sequencer
yesITSyesAraliaceaePanax notoginsengyesmultiyearyesyesyesyesyesyesyesnonoyes
Wenshan, Yunnan, China
23.40,104.22
442
Khoyratty, S., Dupont, J., Lacoste, S., Palama, T. L., Choi, Y. H., Kim, H. K., ... & Kodja, H. (2015). Fungal endophytes of Vanilla planifolia across Réunion Island: isolation, distribution and biotransformation. BMC plant biology, 15(1), 142.
funginoNAyesyes
Genoscope
yesITS, 28syesOrchidaceaeVanilla planifoliayesmultiyearyesyesnoyesyesnoyesRéunion Island-20.96,55.65-21.13,55.80-21.15,55.83-21.20,55.82-21.09,55.60-21.35,55.69
455
Torres-Cortés, G., Bonneau, S., Bouchez, O., Genthon, C., Briand, M., Jacques, M. A., & Barret, M. (2018). Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence. Frontiers in plant science, 9.
bacteriayesyesNAno
Illumina HiSeq 3000
yes
entire genome
yesFabaceaePhaseolus vulgarisyesbothyesyesyesNAnonoyes
obtained seeds (from unknown)
NA
456
Torres-Cortés, G., Bonneau, S., Bouchez, O., Genthon, C., Briand, M., Jacques, M. A., & Barret, M. (2018). Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence. Frontiers in plant science, 9.
bacteriayesyesNAno
Illumina HiSeq 3001
yes
entire genome
yesBrassicaceaeRaphanus sativusyesbothyesyesyesNAnonoyes
obtained seeds (from unknown)
NA
458
Agler, M. T., Ruhe, J., Kroll, S., Morhenn, C., Kim, S. T., Weigel, D., & Kemen, E. M. (2016). Microbial hub taxa link host and abiotic factors to plant microbiome variation. PLoS biology, 14(1), e1002352.
bacteriayesyesNAno
Illumina MiSeq
yes16s, ITSyesBrassicaceaeArabidopsis thalianayesmultiyearyesyesyesNAyesyesyesyes
Tübingen, southern Germany
48.52,9.06
480
Miyambo, T., Makhalanyane, T. P., Cowan, D. A., & Valverde, A. (2016). Plants of the fynbos biome harbour host species-specific bacterial communities. FEMS microbiology letters, 363(15).
bacteriayesyesNAno
Illumina MiSeq
yes16snoAizoaceaeErepsia ancepsyesmultiyearyesyesnoNAyesnoyesyes
Fernkloof Nature Reserve, Hermanus, South Africa
-34.39,19.27
481
Miyambo, T., Makhalanyane, T. P., Cowan, D. A., & Valverde, A. (2016). Plants of the fynbos biome harbour host species-specific bacterial communities. FEMS microbiology letters, 363(15).
bacteriayesyesNAno
Illumina MiSeq
yes16snoAsteraceaePhaenocoma proliferayesmultiyearyesyesnoNAyesnoyesyes
Fernkloof Nature Reserve, Hermanus, South Africa
-34.39,19.27
516
Younginger, B. S., & Ballhorn, D. J. (2017). Fungal endophyte communities in the temperate fern Polystichum munitum show early colonization and extensive temporal turnover. American Journal of Botany.
fungiyesyesNAno
Illumina MiSeq
yesITSnoDryopteridaceae
Polystichum munitumyesmultiyearyesyesnoNAnoyesyes45.73,-123.19
522
de Souza Leite, T., Cnossen-Fassoni, A., Pereira, O. L., Mizubuti, E. S. G., de Araújo, E. F., & de Queiroz, M. V. (2013). novel and highly diverse fungal endophytes in soybean revealed by the consortium of two different techniques. Journal of Microbiology, 51(1), 56-69.
funginoNAyesyes
MegaBACE 1000
yesITSyesFabaceae
Glycine max (2 cultivars)
yesmultiyearyesyesyesnononoyes-20.77,-42.87
538
Rosa, Luiz Henrique, et al. "Endophytic fungi community associated with the dicotyledonous plant Colobanthus quitensis (Kunth) Bartl.(Caryophyllaceae) in Antarctica." FEMS Microbiology Ecology 73.1 (2010): 178-189.
funginoyesyesyes
MegaBACE™ 1,001
yesITSyesCaryophyllaceaeColobanthus quitensisyesyesmultiyearyesyesnoyesyesnoyes-62.10,-58.52
539
Kharwar, Ravindra N., et al. "The endophytic fungal complex of Catharanthus roseus (L.) G. Don." Current Science (00113891) 95.2 (2008).
funginoyesyesyes
MegaBACETM1000
yesITSyesApocynaceaeCatharanthus roseusyesyesmultiyearyesyesyesyesnoyesyesnoyes25.27,82.9925.6,82.6
555
David, A. S., Seabloom, E. W., & May, G. (2017). Disentangling environmental and host sources of fungal endophyte communities in an experimental beachgrass study. Molecular Ecology.
fungiyesyesyesyesMiseqyesITS1noPoaceaeElymus mollisyesmultiyearyesyesnoyesyesnoyes45.17,-123.9745.28,-123.9545.5,-123.95
556
David, A. S., Seabloom, E. W., & May, G. (2017). Disentangling environmental and host sources of fungal endophyte communities in an experimental beachgrass study. Molecular Ecology.
fungiyesyesyesyesMiseqyesITS1noPoaceaeAmmophila arenariayesmultiyearyesyesnoyesyesnoyes45.17,-123.9745.28,-123.9545.5,-123.95
557
David, A. S., Seabloom, E. W., & May, G. (2017). Disentangling environmental and host sources of fungal endophyte communities in an experimental beachgrass study. Molecular Ecology.
fungiyesyesyesyesMiseqyesITS1noPoaceae
Ammophila breviligulata
yesmultiyearyesyesnoyesyesnoyes45.17,-123.9745.28,-123.9545.5,-123.95
560
Glynou, K., Nam, B., Thines, M., & Marcia-Vicente, J. G. (2018). Facultative root-colonizing fungi dominate endophytic assemblages in roots of nonmycorrhizal Microthlaspi species. New Phytologist 217, 1190-1202.
fungiyesyesNAnoMiseqyesITSnoBrassicaceaeMicrothlaspiyes
annual/biennial
yesyesnoNAyesnoyes
A lot across Europe
NA
567
Granzow, S., Kaiser, K., Wemheuer, B., Pfeiffer, B., Daniel, R., Vidal, S., & Wemheuer, F. (2017). The effects of cropping regimes on fungal and bacterial communities of wheat and faba bean in a greenhouse pot experiment differ between plant species and compartment. Frontiers in microbiology, 8.
bacteriayesyesnoMiSeqyes16snoFabaceaeVicia fabayes
annual/biennial
yesyesyesyesyesNANAnoyesGreenhouseNA
568
Harrison, J. G., Parchman, T. L., Cook, D., Gardner, D. R., & Forister, M. L. (2018). A heritable symbiont and host‐associated factors shape fungal endophyte communities across spatial scales. Journal of Ecology.
fungiyesyesnoMiSeqyesITS1noFabaceae
Astragalus lentiginosus
yesyesmultiyearyesyesyesNAyesnoyes
39.85890866,-118.9444869
40.61545624,-119.723288
40.71936573,-119.3313915
40.76180676,-119.4875766
40.45786953,-117.055360
39.45431983,-112.9106654
38.65028682,-113.6674248
39.04551842,-113.8714286
39.4149742,-115.0823949
38.90219334,-118.0230395
37.45473436,-117.241393
36.63914795,-116.5683435
40.61542934,-115.3751349
44.67365,-112.74197
39.957,-119.517
41.5576134,-114.7462223
42.39648586,-117.7175965
44.2569046,-117.6084115
43.56580259,-119.3231331
42.56340841,-119.5732871
36.83754709,-114.1156974
38.62884579,-120.2094768
39.45580622,-116.9945978
37.38268589,-118.1844631
37.47078761,-118.402034
38.08148901,-119.041388
39.29664662,-118.4154115
569
Harrison, J. G., Urruty, D. M., & Forister, M. L. (2016). An exploration of the fungal assemblage in each life history stage of the butterfly, Lycaeides melissa (Lycaenidae), as well as its host plant Astragalus canadensis (Fabaceae). Fungal Ecology, 22, 10-16.
fungiyesyesnoMiSeqyesITS1noFabaceaeAstragalus canadensisyesyesmultiyearyesyesyesNAnonoyes39.53,-119.81
576
Klaedtke, S., Jacques, M. A., Raggi, L., Préveaux, A., Bonneau, S., Negri, V., ... & Barret, M. (2015). Terroir is a key driver of seed‐associated microbial assemblages. Environmental microbiology.
fungi, bacteria
yesyesnoMiSeqyesITS, 16syesFabaceaePhaseolus vulgarisyes
annual/biennial
yesyesnoNAyesnoyes49.70,6.0448.05,-1.79
592
Thomas, P., Sekhar, A. C., & Shaik, S. P. (2017). High taxonomic diversity of cultivation-recalcitrant endophytic bacteria in grapevine field shoots, their in vitro introduction, and unsuspected persistence. Planta, 1-20.
bacteriayesyesnoMiSeqyes16snoVitaceaeVitis viniferayesmultiyearyesyesnoNAnoyesyes12.97,77.59
594
Unterseher, M., Karunarathna, S. C., Cruz, G. R., Dagamac, N. H., Dahl, M. B., Dool, S. E., ... & Schöner, C. 2018. Mycobiomes of sympatric Amorphophallus albispathus (Araceae) and Camellia sinensis (Theaceae)–a case study reveals clear tissue preferences and differences in diversity and composition. Mycological Progress, 1-12.
fungiyesyesNAnoMiseqyesITSnoAraceae
Amorphophallus albispathus
yesmultiyearyesyesyesyesnoNAnonoyes19.12,98.72
658
Bayman, P., Lebron, L. L., Tremblay, R. L., & Lodge, D. (1997). Variation in endophytic fungi from roots and leaves of Lepanthes (Orchidaceae). New Phytologist, 135(1), 143-149.
funginoNAyesNAyesNANAOrchidaceaeLepanthes caritensisyesmultiyearyesyesyesnonoyesnoyes18.24,-65.6418.1,-66.06
659
Bayman, P., Lebron, L. L., Tremblay, R. L., & Lodge, D. (1997). Variation in endophytic fungi from roots and leaves of Lepanthes (Orchidaceae). New Phytologist, 135(1), 143-149.
funginoNAyesNAyesNANAOrchidaceaeLepanthes dodianayesmultiyearyesyesyesnonoyesnoyes18.24,-65.6418.1,-66.06
660
Bayman, P., Lebron, L. L., Tremblay, R. L., & Lodge, D. (1997). Variation in endophytic fungi from roots and leaves of Lepanthes (Orchidaceae). New Phytologist, 135(1), 143-149.
funginoNAyesNAyesNANAOrchidaceaeLepanthes rupestrisyesmultiyearyesyesyesnonoyesnoyes18.24,-65.6418.1,-66.06
661
Bayman, P., Lebron, L. L., Tremblay, R. L., & Lodge, D. (1997). Variation in endophytic fungi from roots and leaves of Lepanthes (Orchidaceae). New Phytologist, 135(1), 143-149.
funginoNAyesNAyesNANAOrchidaceaeLepanthes sanguineayesmultiyearyesyesyesnonoyesnoyes18.24,-65.6418.1,-66.06
662
Bayman, P., Lebron, L. L., Tremblay, R. L., & Lodge, D. (1997). Variation in endophytic fungi from roots and leaves of Lepanthes (Orchidaceae). New Phytologist, 135(1), 143-149.
funginoNAyesNAyesNANAOrchidaceae
Lepanthes selenitepala
yesmultiyearyesyesyesnonoyesnoyes18.24,-65.6418.1,-66.06
663
Bayman, P., Lebron, L. L., Tremblay, R. L., & Lodge, D. (1997). Variation in endophytic fungi from roots and leaves of Lepanthes (Orchidaceae). New Phytologist, 135(1), 143-149.
funginoNAyesNAyesNANAOrchidaceaeLepanthes velezianayesmultiyearyesyesyesnonoyesnoyes18.24,-65.6418.1,-66.06
664
Bayman, P., Lebron, L. L., Tremblay, R. L., & Lodge, D. (1997). Variation in endophytic fungi from roots and leaves of Lepanthes (Orchidaceae). New Phytologist, 135(1), 143-149.
funginoNAyesNAyesNANAOrchidaceae
Lepanthes woodburyana
yesmultiyearyesyesyesnonoyesnoyes18.24,-65.6418.1,-66.06
672
Bussaban, B., Lumyong, S., Lumyong, P., McKenzie, E. H., & Hyde, K. D. (2001). Endophytic fungi from Amomum siamense. Canadian Journal of Microbiology, 47(10), 943-948.
funginoNAyesNAyesNANAZingiberaceaeAmomum siamenseyesyesmultiyearyesyesyesyesnonoyesyesyes18.81,98.92
734
Gamboa, M. A., Laureano, S., & Bayman, P. (2003). Measuring diversity of endophytic fungi in leaf fragments: Does size matter?. Mycopathologia, 156(1), 41-45.
funginoNAyesNAyesNANAZingiberaceae
Renealmia jamaicensis var. puberula
yesmultiyearyesyesnonononoyes18.40,-66.05
747
Granér, G., Persson, P., Meijer, J., & Alström, S. (2003). A study on microbial diversity in different cultivars of Brassica napus in relation to its wilt pathogen, Verticillium longisporum. FEMS microbiology letters, 224(2), 269-276.
bacterianoNAyesNAyesNANABrassicaceaeBrassica napusyesyes
annual/biennial
yesyesyesyesyesnononoyes59.86,17.64
803
Hodgson, S., Cates, C., Hodgson, J., Morley, N. J., Sutton, B. C., & Gange, A. C. (2014). Vertical transmission of fungal endophytes is widespread in forbs. Ecology and evolution, 4(8), 1199-1208.
funginoNAyesNAyesNANAAsteraceaeCentaurea cyanusyes
annual/biennial
yesyesyesnoNAnonoyes
Royal Holloway University of London
51.43,-0.56
804
Hodgson, S., Cates, C., Hodgson, J., Morley, N. J., Sutton, B. C., & Gange, A. C. (2014). Vertical transmission of fungal endophytes is widespread in forbs. Ecology and evolution, 4(8), 1199-1208.
funginoNAyesNAyesNANAAsteraceaeCentaurea nigrayesmultiyearyesyesyesnoNAnonoyes
Royal Holloway University of London
51.43,-0.57
805
Hodgson, S., Cates, C., Hodgson, J., Morley, N. J., Sutton, B. C., & Gange, A. C. (2014). Vertical transmission of fungal endophytes is widespread in forbs. Ecology and evolution, 4(8), 1199-1208.
funginoNAyesNAyesNANAPapaveraceaePapaver rhoeasyes
annual/biennial
yesyesyesnoNAnonoyes
Royal Holloway University of London
51.43,-0.58
806
Hodgson, S., Cates, C., Hodgson, J., Morley, N. J., Sutton, B. C., & Gange, A. C. (2014). Vertical transmission of fungal endophytes is widespread in forbs. Ecology and evolution, 4(8), 1199-1208.
funginoNAyesNAyesNANAPlantaginaceaePlantago lanceolatayesmultiyearyesyesyesnoNAnonoyes
Royal Holloway University of London
51.43,-0.59
807
Hodgson, S., Cates, C., Hodgson, J., Morley, N. J., Sutton, B. C., & Gange, A. C. (2014). Vertical transmission of fungal endophytes is widespread in forbs. Ecology and evolution, 4(8), 1199-1208.
funginoNAyesNAyesNANAPolygonaceaeRumex acetosayesmultiyearyesyesyesnoNAnonoyes
Royal Holloway University of London
51.43,-0.60
808
Hodgson, S., Cates, C., Hodgson, J., Morley, N. J., Sutton, B. C., & Gange, A. C. (2014). Vertical transmission of fungal endophytes is widespread in forbs. Ecology and evolution, 4(8), 1199-1208.
funginoNAyesNAyesNANAAsteraceaeSenecio vulgarisyes
annual/biennial
yesyesyesnoNAnonoyes
Royal Holloway University of London
51.43,-0.61
813
Huang, W. Y., et al. "Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants." Fungal divers 33.1560-2745 (2008): 61-75.
funginoNAyesNAyesNANAAsteraceaeArtemisia indicayesyesmultiyearyesyesyesyesyesyesnoyesyesnoyesyes22.43,114.1222.44,114.1722.4,114.1122.43,114.2422.41,114.38
814
Huang, W. Y., et al. "Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants." Fungal divers 33.1560-2745 (2008): 61-75.
funginoNAyesNAyesNANAAsteraceaeArtemisia lactiflorayesyesmultiyearyesyesyesyesyesyesnoyesyesnoyesyes22.43,114.1222.44,114.1722.4,114.1122.43,114.2422.41,114.38
815
Huang, W. Y., et al. "Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants." Fungal divers 33.1560-2745 (2008): 61-75.
funginoNAyesNAyesNANAApocynaceaeAsclepias curassavicayesyesmultiyearyesyesyesyesyesyesnoyesyesnoyesyes22.43,114.1222.44,114.1722.4,114.1122.43,114.2422.41,114.38
816
Huang, W. Y., et al. "Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants." Fungal divers 33.1560-2745 (2008): 61-75.
funginoNAyesNAyesNANAApocynaceaeCatharanthus roseusyesyesmultiyearyesyesyesyesyesyesnoyesyesnoyesyes22.43,114.1222.44,114.1722.4,114.1122.43,114.2422.41,114.38
818
Huang, W. Y., et al. "Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants." Fungal divers 33.1560-2745 (2008): 61-75.
funginoNAyesNAyesNANASolanaceaeCestrum nocturnumyesyesmultiyearyesyesyesyesyesyesnoyesyesnoyesyes22.43,114.1222.44,114.1722.4,114.1122.43,114.2422.41,114.38
819
Huang, W. Y., et al. "Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants." Fungal divers 33.1560-2745 (2008): 61-75.
funginoNAyesNAyesNANAApocynaceaeDischidia chinensisyesyesmultiyearyesyesyesyesyesyesnoyesyesnoyesyes22.43,114.1222.44,114.1722.4,114.1122.43,114.2422.41,114.38
820
Huang, W. Y., et al. "Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants." Fungal divers 33.1560-2745 (2008): 61-75.
funginoNAyesNAyesNANAApocynaceaeGraphistemma pictumyesyesmultiyearyesyesyesyesyesyesnoyesyesnoyesyes22.43,114.1222.44,114.1722.4,114.1122.43,114.2422.41,114.38
821
Huang, W. Y., et al. "Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants." Fungal divers 33.1560-2745 (2008): 61-75.
funginoNAyesNAyesNANAApocynaceaeGymnema sylvestreyesyesmultiyearyesyesyesyesyesyesnoyesyesnoyesyes22.43,114.1222.44,114.1722.4,114.1122.43,114.2422.41,114.38
822
Huang, W. Y., et al. "Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants." Fungal divers 33.1560-2745 (2008): 61-75.
funginoNAyesNAyesNANAApocynaceaeHoya carnosayesyesmultiyearyesyesyesyesyesyesnoyesyesnoyesyes22.43,114.1222.44,114.1722.4,114.1122.43,114.2422.41,114.38
827
Huang, W. Y., et al. "Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants." Fungal divers 33.1560-2745 (2008): 61-75.
funginoNAyesNAyesNANAPolygonaceaePolygonum capitatumyesmultiyearyesyesyesyesyesyesnoyesyesnoyesyes22.43,114.1222.44,114.1722.4,114.1122.43,114.2422.41,114.38
828
Huang, W. Y., et al. "Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants." Fungal divers 33.1560-2745 (2008): 61-75.
funginoNAyesNAyesNANAPolygonaceaePolygonum chinenseyesmultiyearyesyesyesyesyesyesnoyesyesnoyesyes22.43,114.1222.44,114.1722.4,114.1122.43,114.2422.41,114.38
829
Huang, W. Y., et al. "Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants." Fungal divers 33.1560-2745 (2008): 61-75.
funginoNAyesNAyesNANAPolygonaceae
Polygonum cuspidatum
yesmultiyearyesyesyesyesyesyesnoyesyesnoyesyes22.43,114.1222.44,114.1722.4,114.1122.43,114.2422.41,114.38
830
Huang, W. Y., et al. "Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants." Fungal divers 33.1560-2745 (2008): 61-75.
funginoNAyesNAyesNANAPolygonaceaePolygonum multiflorumyesmultiyearyesyesyesyesyesyesnoyesyesnoyesyes22.43,114.1222.44,114.1722.4,114.1122.43,114.2422.41,114.38
831
Huang, W. Y., et al. "Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants." Fungal divers 33.1560-2745 (2008): 61-75.
funginoNAyesNAyesNANALamiaceaeScutellaria indicayesmultiyearyesyesyesyesyesyesnoyesyesnoyesyes22.43,114.1222.44,114.1722.4,114.1122.43,114.2422.41,114.38
837
Huang, W. Y., et al. "Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants." Fungal divers 33.1560-2745 (2008): 61-75.
funginoNAyesNAyesNANAApocynaceaeTylophora ovatayesmultiyearyesyesyesyesyesyesnoyesyesnoyesyes22.43,114.1222.44,114.1722.4,114.1122.43,114.2422.41,114.38
844
Kannan, K. P., Kumar, D. M., Ramya, P. R., Nika, S. M., Meenatchi, G., Sowmya, A. N., & Bhuvaneswari, S. (2014). Diversity of endophytic fungi from salt tolerant plants. Int J ChemTech Res, 6, 4084-4088.
funginoNAnoyesNAyes
microscopy
NAPoaceaeSpinifex littoreusyesmultiyearyesyesyesyesnonononoyesChennai, IndiaNA
845
Kannan, K. P., Kumar, D. M., Ramya, P. R., Nika, S. M., Meenatchi, G., Sowmya, A. N., & Bhuvaneswari, S. (2014). Diversity of endophytic fungi from salt tolerant plants. Int J ChemTech Res, 6, 4084-4088.
funginoNAnoyesNAyes
microscopy
NAAmaranthaceaeSalicornia spyesmultiyearyesyesyesyesnonononoyesChennai, IndiaNA
846
Kannan, K. P., Kumar, D. M., Ramya, P. R., Nika, S. M., Meenatchi, G., Sowmya, A. N., & Bhuvaneswari, S. (2014). Diversity of endophytic fungi from salt tolerant plants. Int J ChemTech Res, 6, 4084-4088.
funginoNAnoyesNAyes
microscopy
NAPortulacaceae
Portulaca portulacasrtum
yesmultiyearyesyesyesyesnonononoyesChennai, IndiaNA
870
Krishnamurthy, Yelugere L., Shankar B. Naik, and Shashikala Jayaram. "Fungal communities in herbaceous medicinal plants from the Malnad region, Southern India." Microbes and Environments 23.1 (2008): 24-28.
funginoNAyesNAyesNANAFabaceaeCassia torayesyesmultiyearyesyesnonoyesyesyes13.40,75.3513.45,75.40