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1 | Year | Authors | Title | Sediment type | Organisms | Time Period (cal. yr BP) | Studied ecosystems | Studied forcing factors | Current climate at site | DNA extraction methods | sediment mass (g) | DNA-based methods | Molecular barcodes | Fragment length (bp) | State | Aim | doi | Journal | Vol | No | pages | Data repository | Accession number | Code | Google Scholar account | sed-DNA Newsletter | |||||||||||||
2 | |||||||||||||||||||||||||||||||||||||||
3 | 2023 | Armbrecht et al. 2023 | From the Surface Ocean to the Seafloor: Linking Modern and Paleo-Genetics at the Sabrina Coast, East Antarctica (IN2017_V01) | marine | 10.1029/2022JG007252 | ? | April-2023 | ||||||||||||||||||||||||||||||||
4 | 2023 | Barrenechea et al. 2023 | Encapsulated in sediments: eDNA deciphers the ecosystem history of one of the most polluted European marine sites | marine | 10.1016/j.envint.2023.107738 | x | Feb-2023 | ||||||||||||||||||||||||||||||||
5 | 2023 | Elliott et al. 2023 | Sedimentary Ancient DNA Reveals Local Vegetation Changes Driven by Glacial Activity and Climate | limnic | vascular plants, mosses | 10 400 | terrestrial | climate, glacial activity | subpolar | DNeasy PowerSoil PowerLyzer (Qiagen) | 0.25-0.35 | metabarcoding | P6, trnL | na | past | ecology | 10.3390/quat6010007 | Quaternary | 6 | 1 | 7 | x | Feb-2023 | ||||||||||||||||
6 | 2023 | Everett & Cribdon 2023 | MetaDamage tool: Examining post-mortem damage in sedaDNA on a metagenomic scale | 10.3389/fevo.2022.888421 | x | Feb-2023 | |||||||||||||||||||||||||||||||||
7 | 2023 | Giguet-Covex et al. 2023 | Long-term trajectories of mountain agro-ecosystems in the north-western Alps | limnic | plants and animials | terrestial | climate and human activites | Alps | 10.1007/s10113-023-02030-5 | Regional Environmental Change | 23 | 58 | |||||||||||||||||||||||||||
8 | 2023 | Gu et al. 2023 | Food resources of the Khog Gzung site on the Tibetan Plateau revealed by sedimentary ancient DNA | 10.1007/s11430-022-1051-8 | x | April-2023 | |||||||||||||||||||||||||||||||||
9 | 2023 | Heathcote et al. 2023 | Sedimentary DNA and pigments show increasing abundance and toxicity of cyanoHABs during the Anthropocene | 10.1111/fwb.14069 | x | April-2023 | |||||||||||||||||||||||||||||||||
10 | 2023 | Kalu et al. 2023 | Community dynamics of microbial eukaryotes in intertidal mudflats in the hypertidal Bay of Fundy | mudflat | microbial eukaryotes | na | aqautic | metabarcoding | 18S rRNA | present | ecology | 10.1038/s43705-023-00226-8 | The ISME Journal | ||||||||||||||||||||||||||
11 | 2023 | Li et al. 2023 | Sedimentary DNA for tracking the long-term changes in biodiversity | 10.1007/s11356-023-25130-5 | x | Feb-2023 | |||||||||||||||||||||||||||||||||
12 | 2023 | Mejbel et al. 2023 | Long-term cyanobacterial dynamics from lake sediment DNA in relation to experimental eutrophication, acidification and climate change | limnic | cyanobacteria | 10.1111/fwb.14074 | x | April-2023 | |||||||||||||||||||||||||||||||
13 | 2023 | Nwosu et al. 2023 | Early human impact on lake cyanobacteria revealed by a Holocene record of sedimentary ancient DNA | limnic | cyanobacteria | 10.1038/s42003-023-04430-z | x | Feb-2023 | |||||||||||||||||||||||||||||||
14 | 2023 | Paine et al. 2023 | Coccolithophore assemblage changes over the past 9 kyrs BP from a climate hotspot in Tasmania, southeast Australia | 9 000 | 10.1016/j.marmicro.2023.102209 | x | Feb-2023 | ||||||||||||||||||||||||||||||||
15 | 2023 | Revéret et al. 2023 | Environmental DNA of aquatic macrophytes: the potential for reconstructing past and present vegetation and environments | limnic | freshwater vascular plants | 14 000 | limnic | abiotic factors | subpolar, boreal | DNeasy PowerSoil PowerLyzer (Qiagen) | 0.25-0.35 | metabarcoding | past | review | 10.1101/2023.03.27.533457 | Sep-2023 | |||||||||||||||||||||||
16 | 2023 | Rudaya et al. 2023 | Terrestrial Vegetation and Lake Aquatic Community Diversity Under Climate Change During the Mid–Late Holocene in the Altai Mountains | limnic | 10.31951/2658-3518-2022-A-4-1550 | x | April-2023 | ||||||||||||||||||||||||||||||||
17 | 2023 | Srivastava et al. 2023 | A need to integrate metagenomics and metabolomics in geosciences and develop the deep-time digital earth-biome database of India | 10.18520/cs/v124/i1/26-37 | x | Feb-2023 | |||||||||||||||||||||||||||||||||
18 | 2023 | Thorpe et al. 2023 | Evaluating the use of lake sedimentary DNA in palaeolimnology: A comparison with long-term microscopy-based monitoring of the phytoplankton community | limnic | phytoplankton | 10.22541/au.167819405.56988284/v1 | |||||||||||||||||||||||||||||||||
19 | 2023 | Wu et al. 2023 | Microbial life in 25-m-deep boreholes in ancient permafrost illuminated by metagenomics | permafrost | bacteria & archaea | Holocene | terrestial | FastDNA Spin Kit for Soi | metagenomic, amplicon sequencing | 16S rRNA | 10.1186/s40793-023-00487-9 | Environmental Microbiome | 18 | 33 | |||||||||||||||||||||||||
20 | 2023 | Zimmermann et al. 2023 | Marine ecosystem shifts with deglacial sea-ice loss inferred from ancient DNA shotgun sequencing | marine | shotgun | 10.1111/fwb.14027 | x | April-2023 | |||||||||||||||||||||||||||||||
21 | 2022 | Anslan et al 2022 | Compatibility of Diatom Valve Records With Sedimentary Ancient DNA Amplicon Data: A Case Study in a Brackish, Alkaline Tibetan Lake | limnic | diatoms | 1 000 | aquatic | na | alpine | DNeasy PowerSoil Kit (Qiagen, Germany) | 0.5 | metabarcoding | rbcL | na | past | ecology | 10.3389/feart.2022.824656 | Frontiers in Earth Science | 10 | x | 824656 | x | April-2022 | ||||||||||||||||
22 | 2022 | Alsos et al. 2022 | Postglacial species arrival and diversity buildup of northern ecosystems took millenia | limnic | Plants | 16 000 | terrestrial and aquatic | climate | boreal, alpine, subarctic | DNeasy PowerSoil Kit (Qiagen, Germany) | trnL | past | ecology | 10.1126/sciadv.abo7434 | x | oct.-2022 | |||||||||||||||||||||||
23 | 2022 | Armbrecht et al. 2022 | Ancient marine sediment DNA reveals diatom transition in Antarctica | marine | Bacteria, Archaea, and Eukaryota | 1 Ma | aquatic | metagenomics | past | ecology | 10.1038/s41467-022-33494-4 | Nature Communications | x | oct.-2022 | |||||||||||||||||||||||||
24 | 2022 | Barouillet et al. 2022 | Paleoreconstructions of ciliate communities reveal long-term ecological changes in temperate lakes | limnic | ciliates | na | limnic | na | temperate | NucleoSpin® soil kit | 0.5 | metabarcoding | 18S | 400 bp | past | ecology | 10.1038/s41598-022-12041-7 | Scientific Reports | 12 | x | 7899 | x | June-2022 | ||||||||||||||||
25 | 2022 | Bell et al. 2022 | Plants, pollinators and their interactions under global ecological change: the role of pollen DNA metabarcoding | sediments | plants | na | terrestial | climate and human activites | Review paper | 10.1111/mec.16689 | Molecular Ecology | 0 | 1-18 | Jan-22 | |||||||||||||||||||||||||
26 | 2022 | Braga et al. 2022 | Viruses direct carbon cycling in lake sediments under global change | limnic | viruses, bacterial | aqauatic | carbon cycling | metagenomics | modern | ecology and carbon cycling | 10.1073/pnas.220226111 | PNAS | 119 | 41 | e2202261119 | ||||||||||||||||||||||||
27 | 2022 | Brasell et al. 2022 | Shifts in DNA yield and biological community composition in stored sediment: implications for paleogenomic studies | limnic | bacteria/eukaryotes | na | aquatic | na | temperate | DNeasy PowerSoil Kit (Qiagen, Germany) | 0.5 | metabarcoding | 16S, 18S | na | modern | ecology | 10.3897/mbmg.6.78128 | Metabarcoding and Metagenomics | 6 | x | 1-14 | x | Feb-2022 | ||||||||||||||||
28 | 2022 | Brown et al. 2022 | Paleoeconomy more than demography determined prehistoric human impact in Arctic Norway | limnic | plants, animals | 12 000 | terrestrial, marine, aquatic | climate and human impact | N Boreal | DNeasy PowerSoil Kit (Qiagen, Germany) | metabarcoding | trnL, 12S, 16S | past | ecology | 10.1093/pnasnexus/pgac209 | x | nov.-2022 | ||||||||||||||||||||||
29 | 2022 | Brown et al. 2022 | New integrated molecular approaches for understanding lake settlements in NW Europe | 10.15184/aqy.2022.70 | ? | may-2022 | |||||||||||||||||||||||||||||||||
30 | 2022 | Capo et al. 2022 | Environmental paleomicrobiology: using DNA preserved in aquatic sediments to its full potential | limnic/marine | bacteria/archaea/microbial eukaryotes | na | aquatic | na | na | na | na | metabarcoding/shotgun | na | na | past | Review paper | 10.1111/1462-2920.15913 | Environmental Microbiology | x | x | x | x | Feb-2022 | ||||||||||||||||
31 | 2022 | Cordier et al. 2022 | Patterns of eukaryotic diversity from the surface to the deep-ocean sediments to the deep-ocean sediment | marine | microbial eukaryotes | aquatic | 2g | metabarcoding | 18S-V9 | modern | microbial ecology | doi:10.1126/sciadv.abj9309 | Science Advances | 8 | 9309 | ||||||||||||||||||||||||
32 | 2022 | Courtin et al. 2022 | Pleistocene glacial and interglacial ecosystems inferred from ancient DNA analyses of permafrost sediments from Batagay megaslump, East Siberia | permafrost | 10.1002/edn3.336 | x | Sep-2022 | ||||||||||||||||||||||||||||||||
33 | 2022 | Cuenca-Cambronero et al. 2022 | An integrative paleolimnological approach for studying evolutionary processes | limnic | na | na | aquatic | climate/environmental changes | na | na | na | na | na | na | past | Review paper | 10.1016/j.tree.2022.01.007 | Trends in Ecology & Evolution | 2963 | x | x | x | March-2022 | ||||||||||||||||
34 | 2022 | de Souza et al. 2022 | Diversity, distribution and ecology of fungal communities present in Antarctic lake sediments uncovered by DNA metabarcoding | limnic | fungi | polar | 0.1038/s41598-022-12290-6 | x | June-2022 | ||||||||||||||||||||||||||||||
35 | 2022 | Fonseca et al. 2022 | Green algae (Viridiplantae) in sediments from three lakes on Vega Island, Antarctica, assessed using DNA metabarcoding | limnic | green algae | na | aquatic | na | polar | PowerSoil® DNA Isolation Kit (QIAGEN) | 0.5 | metabarcoding | ITS3, ITS4 | 650 bp | past | ecology | 10.1007/s11033-021-06857-1 | Molecular Biology Reports | 49 | x | 179-188 | x | nov.-2021 | ||||||||||||||||
36 | 2022 | Frankl et al. 2022 | Tracing hotspots of soil erosion in high mountain environments: how forensic science based on plant eDNA can lead the way. An opinion | 10.1007/s11104-021-05261-9 | x | may-2022 | |||||||||||||||||||||||||||||||||
37 | 2022 | Greco et al. 2022 | Environmental RNA outperforms eDNA metabarcoding in assessing impact of marine pollution: A chromium-spiked mesocosm test | marine | foraminifera | modern | aquatic | na | temperate | PowerSoil™ Total RNA Isolation Kit and DNA Elution Accessory Kit (MoBio, USA) | na | metabarcoding | 37f | 200 bp | modern | Methodology | 10.1016/j.chemosphere.2022.134239 | Chemosphere | 298 | x | 134239 | x | April-2022 | ||||||||||||||||
38 | 2022 | Garces-Pastor et al. 2021 | High resolution ancient sedimentary DNA shows that alpine plant biodiversity is a result of human land use | limnic | plants | 12 000 | terrestrial | human activities | alpine | PowerMax® Soil DNA Isolation Kit (QIAGEN) | na | metabarcoding | 16S | 150 | past | Ecology | 10.1038/s41467-022-34010-4 | x | x | x | x | nov.-2022 | |||||||||||||||||
39 | 2022 | Gauthier et al. 2022 | Sedimentary DNA of a human-impacted lake in Western Canada (Cultus Lake) reveals changes in micro-eukaryotic diversity over the past ~200 years | limnic | eukaryotes | 200 | aquatic | climate/human impact | temperate | custom protocol | 0.5-1.0 | metabarcoding | 18S | 260 bp | past | ecology | 10.1002/edn3.310 | Environmental DNA | early view | x | June-2022 | ||||||||||||||||||
40 | 2022 | Han et al. 2022 | Long-term preservation of biomolecules in lake sediments: potential importance of physical shielding by recalcitrant cell walls | limnic | 10.1093/pnasnexus/pgac076 | x | Sep-2022 | ||||||||||||||||||||||||||||||||
41 | 2022 | Hebda et al. 2022 | Late Pleistocene palaeoenvironments and a possible glacial refugium on northern Vancouver Island, Canada: Evidence for the viability of early human settlement on the northwest coast of North America | limnic | plants/animals | 17 500 | terrestrial | climate | temperate | custom protocol | na | metabarcoding | na | na | past | ecology | 10.1016/j.quascirev.2022.107388 | Quaternary Science Reviews | 279 | x | 107388 | x | March-2022 | ||||||||||||||||
42 | 2022 | Heikkilä et al. 2022 | Predicting the future of coastal marine ecosystems in the rapidly changing Arctic: The potential of palaeoenvironmental records | marine | na | na | aquatic | climate | arcitc | na | na | metabarcoding | na | na | past | ecology | 10.1016/j.ancene.2021.100319 | Anthropocene | 37 | x | 100319 | x | Jan-2022 | ||||||||||||||||
43 | 2022 | Hudson et al. 2022a | Life before Stonehenge: The hunter-gatherer occupation and environment of Blick Mead revealed by sedaDNA, pollen and spores | metabarcoding | 10.1371/journal.pone.0266789 | x | Sep-2022 | ||||||||||||||||||||||||||||||||
44 | 2022 | Hudson et al. 2022b | Lateglacial and Early Holocene palaeoenvironmental change and human activity at Killerby Quarry, North Yorkshire, UK | metabarcoding | 10.1002/jqs.3488 | x | Feb-2023 | ||||||||||||||||||||||||||||||||
45 | 2022 | Huo et al. 2022a | Long-term succession of Microcystis genotypes is driven by hydrological conditions and anthropogenic nutrient loading in a large shallow lake | limnic | cyanobacteria | 70 | aquatic | human impact | temperate | PowerSoil® DNA Isolation Kit (QIAGEN) | na | metabarcoding | ITS | na | past | ecology | 10.1016/j.jhydrol.2022.127451 | Journal of Hydrology | 606 | x | 127451 | x | Feb-2022 | ||||||||||||||||
46 | 2022 | Huo et al. 2022b | Century-Long Homogenization of Algal Communities Is Accelerated by Nutrient Enrichment and Climate Warming in Lakes and Reservoirs of the North Temperate Zone | limnic | algae/cyanobacteria | 100 | aquatic | human impact | temperate | PowerSoil® DNA Isolation Kit (QIAGEN) | 0.5 | metabarcoding | 18S | 260 bp | past | ecology | 10.1021/acs.est.1c06958 | Environmental Science & Technology | 56 | 6 | 3780-3790 | x | March-2022 | ||||||||||||||||
47 | 2022 | Ibrahim et al. 2022 | Vegetation changes over the last centuries in the Lower Lake Constance region reconstructed from sediment-core environmental DNA | limnic | plants | 300 | aquatic/terrestrial | climate/human impact | temperate | DNeasy Powersoil kit | 2 | metabarcoding | trnL | na | past | ecology | 10.1002/edn3.292 | Environmental DNA | early view | x | April-2022 | ||||||||||||||||||
48 | 2022 | Jia et al. 2022a | Preservation of sedimentary plant DNA is related to lake water chemistry | limnic | plants | modern | terrestrial | climate | temperate to subarctic | custom protocol | 5-10 | metabarcoding | trnL | na | modern | ecology | 10.1002/edn3.259 | Environmental DNA | 4 | 2 | 425-439 | x | ? | ||||||||||||||||
49 | 2022 | Jia et al. 2022b | Sedimentary ancient DNA reveals past ecosystem and biodiversity changes on the Tibetan Plateau: Overview and prospects | limnic | na | na | na | na | alpine | na | na | metabarcoding | na | na | past | Review paper | 10.1016/j.quascirev.2022.107703 | Quaternary Science Reviews | 293 | 1 | 107703 | x | Sep-2022 | ||||||||||||||||
50 | 2022 | Kjaer et al. 2022 | A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA | 2 Ma | polar | shotgun | 10.1038/s41586-022-05453-y | x | Feb-2023 | ||||||||||||||||||||||||||||||
51 | 2022 | Lee et al. 2022 | On the use of spores of coprophilous fungi preserved in sediments to indicate past herbivore presence | 10.3390/quat5030030 | x | Sep-2022 | |||||||||||||||||||||||||||||||||
52 | 2022 | Liao et al. 2022 | Characteristics of microbial community composition and its relationship with carbon, nitrogen and sulfur in sediments | lake sediments | bacteria, archaea | na | aquatic | nutrient cycling | temeprate | ALFA-SEQ Advanced Soil DNA Kit | metabarcoding | 16S rRNA | modern and past | 10.1016/j.scitotenv.2021.148848 | Science of the Total Environment | 795 | 148848 | ||||||||||||||||||||||
53 | 2022 | Maixner et al. 2022 | Linear polyacrylamide is highly efficient in precipitating and purifying environmental and ancient DNA | na | na | na | na | na | na | na | na | na | na | ma | na | Methodology | 10.1111/2041-210X.13772 | Methods in Ecology and Evolution | 13 | 3 | 653-667 | x | |||||||||||||||||
54 | 2022 | Marchesini et al. 2022 | Ancient DNA from speleothems: opportunity or challenge? | speleothem | 10.1017/qua.2022.46 | x | nov.-2022 | ||||||||||||||||||||||||||||||||
55 | 2022 | Massilani et al. 2022 | Microstratigraphic preservation of ancient faunal and hominin DNA in Pleistocene cave sediments | cave | human/mammals | 120 000 | terrestrial | na | temperate | custom protocol | 0.5 | metabarcoding | na | na | past | Methodology | 10.1073/pnas.2113666118 | PNAS | 119 | 1 | e2113666118 | x | Jan-2022 | ||||||||||||||||
56 | 2022 | Mejbel et al. 2022 | Effects of temperature and oxygen on cyanobacterial DNA preservation in sediments: A comparison study of major taxa | limnic | cyanobacteria | modern | aquatic | climate | temperate | DNeasy PowerSoil Kit | 0.7 | metabarcoding | 16S | 300 bp | modern | ecology | 10.1002/edn3.289 | Environmental DNA | 00 | x | 1-15 | x | March-2022 | ||||||||||||||||
57 | 2022 | Miller & Simpson 2022 | When did mammoths go extinct? | 10.1038/s41586-021-04016-x | x | nov.-2022 | |||||||||||||||||||||||||||||||||
58 | 2022 | Minamoto 2022 | Environmental DNA analysis for macro-organisms: species distribution and more | na | na | na | na | na | na | na | na | na | na | na | na | Review paper | 10.1093/dnares/dsac018 | DNA Research | 29 | 3 | dsca018 | x | ? | ||||||||||||||||
59 | 2022 | Murchie et al. 2020 | Pleistocene mitogenomes reconstructed from the environmental DNA of permafrost sediments | permafrost | na | pleistocene | terrestrial | na | polar | Custom protocol | 0.25 | metabarcoding | na | na | past | ecology | 10.1016/j.cub.2021.12.023 | Current Biology | 32 | x | 851-860 | x | Feb-2022 | ||||||||||||||||
60 | 2022 | Napier et al. 2022 | Emerging palaeoecological frameworks for elucidating plant dynamics in response to fire and other disturbance | na | plants | na | terrestrial | climate, human impact | na | na | na | metabarcoding | na | na | past | ecology | 10.1111/geb.13416 | Global Ecology and Biogeography | 31 | 1 | 138-154 | x | nov.-2021 | ||||||||||||||||
61 | 2022 | Nguyen et al. 2022 | Metabarcoding reveals high diversity of benthic foraminifera linked to water masses circulation at coastal Svalbard | marine | foraminifera | modern | aquatic | climate | polar | DNeasy PowerMax Soil Kit | 10 g | metabarcoding | 18S | 200 bp | modern | ecology | doi.org/10.1111/gbi.12530 | Geobiology | early view | x | nov.-2022 | ||||||||||||||||||
62 | 2022 | Nota et al. 2022 | Norway spruce postglacial recolonization of Fennoscandia | limnic/peat | plants | 42 000 | terrestrial | climate | temperate/subarctic | DNeasy PowerSoil Kit | 0.35 | metabarcoding | mh05 | na | past/modern | ecology | 10.1038/s41467-022-28976-4 | Nature Communications | 13 | x | 1333 | x | April-2022 | ||||||||||||||||
63 | 2022 | Pearman et al. 2022 | Deciphering the molecular signal from past and alive bacterial communities in aquatic sedimentary archives | limnic | cyanobacteria | 700 | aquatic | na | temperate | Custom protocol | 0.25 | metabarcoding | 16S | 230 bp | past | ecology | 10.1111/1755-0998.13515 | Molecular Ecology Resources | 22 | x | 877-890 | x | oct.-2021 | ||||||||||||||||
64 | 2022 | Pedersen et al. 2022 | Ancient Human Genomes and Environmental DNA from the Cement Attaching 2,000-Year-Old Head Lice Nits | terrestrial | human | 2 000 | na | na | na | Custom protocol | na | metabarcoding | past | Methodology | 10.1093/molbev/msab351 | Molecular Biology and Evolution | 39 | 2 | :msab351 | x | Jan-2021 | ||||||||||||||||||
65 | 2022 | Pérez et al. 2022 | A case study for the recovery of authentic microbial ancient DNA from soil samples | soil | 10.3390/microorganisms10081623 | x | Sep-2022 | ||||||||||||||||||||||||||||||||
66 | 2022 | Picard et al. 2022 | Molecular and Pigment Analyses Provide Comparative Results When Reconstructing Historic Cyanobacterial Abundances from Lake Sediment Cores | limnic | cyanobacteria | 1 000 | aquatic | na | temperate | DNeasy PowerSoil Kit | 0.25 | ddPCR | 16S | na | past | Methodology | 10.3390/microorganisms10020279 | Microorganisms | 10 | 2 | 279 | x | Feb-2022 | ||||||||||||||||
67 | 2022 | Ren et al. 2022 | Biogeography of Micro-Eukaryotic Communities in Sediment of Thermokarst Lakes Are Jointly Controlled by Spatial, Climatic, and Physicochemical Factors Across the Qinghai-Tibet Plateau | lake sediments | microbial eukaryotes | modern | lake sediments | Geographic distance | temperature | Magen Hipure Soil DNA Kit | metabarcoding | 18S | present | ecology | 10.3389/fevo.2022.901107 | Frontiers in Microbiology | 10 | ||||||||||||||||||||||
68 | 2022 | Rodriguez-Martinez et al. 2022 | The topological nature of tag jumping in environmental DNA metabarcoding studies | na | 10.1111/1755-0998.13745 | x | Feb-2023 | ||||||||||||||||||||||||||||||||
69 | 2022 | Sakata et al. 2022 | Fish environmental DNA in lake sediment overcomes the gap of reconstructing past fauna in lake ecosystems | limnic | fish | 100 | aquatic | na | temperate | Custom protocol | 10 | qPCR | cytb | 100 bp | past | ecology | 10.1101/2022.06.16.496507 | bioRxiv | x | ||||||||||||||||||||
70 | 2022 | Salisbury et al. 2022 | Making the Most of Soils in Archaeology. A Review | soil | 10.1553/archaeologia106s319 | x | Feb-2023 | ||||||||||||||||||||||||||||||||
71 | 2022 | Sanyal et al. 2022 | Not dead yet: Diatom resting spores can survive in nature for several millennia | marine | diatoms | 6 000 | aquatic | climate | temperate | Custom protocol | na (water samples from algal culture) | sanger | 16S, rbcL | na | past | ecology | 10.1002/ajb2.1780 | Botany | 109 | x | 67-82 | x | Feb-2022 | ||||||||||||||||
72 | 2022 | Schulte et al. 2022 | Larix species range dynamics in Siberia since the Last Glacial captured from sedimentary ancient DNA | limnic | Larix | 30 000 | terrestrial | climate | polar | DNeasy PowerMax Soil Kit | 1 -3 | hybridization capture | na | na | past | ecology | 10.1038/s42003-022-03455-0 | Communications Biology | 5 | 570 | x | Sep-2022 | |||||||||||||||||
73 | 2022 | Seeber et al. 2022 | Evaluation of lake sedimentary ancient DNA metabarcoding to assess fungal biodiversity in Arctic paleoecosystems | limnic | fungi | 40 000 | DNeasy PowerMax Soil Kit | 2-5 | metabarcoding | ITS1 | 500 bp | past | ecology | 10.1002/edn3.315 | Environmental DNA | early view | x | ? | |||||||||||||||||||||
74 | 2022 | Seeber & Epp 2022 | Evaluation of lake Environmental DNA and metagenomics of terrestrial mammals as keystone taxa of recent and past ecosystems | limnic | mammals | 10.1111/mam.12302 | x | Sep-2022 | |||||||||||||||||||||||||||||||
75 | 2022 | Seersholm et al. 2022 | Ancient DNA provides insights into 4,000 years of resource economy across Greenland | 4 000 | 10.1038/s41562-022-01454-z | x | oct.-2022 | ||||||||||||||||||||||||||||||||
76 | 2022 | Segawa et al. 2022 | Reconstruction of the Eukaryotic Communities in Beppu Bay Over the Past 50 Years Based on Sedimentary DNA Barcoding | marine | eukaryotes | 50 | aquatic | climate | temperate | 18S | na | past | ecology | 10.1029/2022JG006825 | JGR Biogeosciences | 127 | 6 | e2022JG006825 | x | June-2022 | |||||||||||||||||||
77 | 2022 | Selway et al. 2022 | An Outlook for the Acquisition of Marine Sedimentary Ancient DNA (sed aDNA) From North Atlantic Ocean Archive Material | marine | eukaryotes | up to 25 000 | na | temperate | Custom protocol | 0.25 | shotgun | na | na | past | Methodology | 10.1029/2021PA004372 | Paleoceanography and Paleoclimatology | 37 | 5 | e2021PA004372 | x | June-2022 | |||||||||||||||||
78 | 2022 | Short et al. 2022 | Using palaeolimnology to guide rehabilitation of a culturally significant lake in New Zealand | limnic | diatoms | 1 000 | aquatic | climate/human impact | temperate | DNeasy PowerSoil Kit | 0.25 | metabarcoding | 16S | na | past | ecology | 10.1002/aqc.3808 | Aquatic Conservation | 2022 | x | 1-20 | x | April-2022 | ||||||||||||||||
79 | 2022 | Slon et al. 2022 | Extended longevity of DNA preservation in Levantine Paleolithic sediments, Sefunim Cave, Israël | cave | 10.1038/s41598-022-17399-2 | x | Sep-2022 | ||||||||||||||||||||||||||||||||
80 | 2022 | Stoof-Leichsenring et al. 2022 | Sedimentary DNA identifies modern and past macrophyte diversity and its environmental drivers in high-latitude and high-elevation lakes in Siberia and China | limnic | macrophyte | up to 200 000 | aquatic | climate | arctic/alpine | PowerMax Soil DNA Isolation kit® (Mo Bio Laboratories) | na | metabarcoding | trnL | na | past | ecology | 10.1002/lno.12061 | Limnology and Oceanography | 9999 | x | 1-16 | x | April-2022 | ||||||||||||||||
81 | 2022 | Suchan et al. 2022 | Performance and automation of ancient DNA capture with RNA hyRAD probes | na | animals | up to 14 000 | terresttrial | na | temperate | Custom protocol | na | hybridization capture | na | na | past | Methodology | 10.1111/1755-0998.13518 | Molecular Ecology Resources | 22 | x | 891-907 | x | oct.-2021 | ||||||||||||||||
82 | 2022 | ter Schure et al. 2022 | Sedimentary ancient DNA metabarcoding as a tool for assessing prehistoric plant use at the Upper Paleolithic cave site Aghitu-3, Armenia | 10.1016/j.jhevol.2022.103258 | x | oct.-2022 | |||||||||||||||||||||||||||||||||
83 | 2022 | Tennant et al. 2022 | In-situ sequencing reveals the effect of storage on lacustrine sediment microbiome demographics and functionality | limnic | 10.1186/s40793-022-00400-w | x | may-2022 | ||||||||||||||||||||||||||||||||
84 | 2022 | Thomson-Laing et al. 2022 | Optimised protocol for the extraction of fish DNA from freshwater sediments | limnic | fish | modern | aquatic | na | na | custom protocol | na | ddPCR | na | na | modern | Methodology | 10.1111/fwb.13962 | Freshwater Biology | early view | x | Sep-2022 | ||||||||||||||||||
85 | 2022 | Thorpe et al. 2022 | Sedimentary DNA records long-term changes in a lake bacterial community in response to varying nutrient availability | limnic | bacteria | 100 | aquatic | climate | temperate | Qiagen DNeasy PowerSoil | metabarcoding | 16S | na | modern | ecology | 10.1002/edn3.344 | Environmental DNA | early view | x | Sep-2022 | |||||||||||||||||||
87 | 2022 | van de Vyver et al. 2022 | Planktonic diatom communities in temperate South-Central Chilean lakes with a focus on Asterionella formosa and the genus Aulacoseira | limnic | diatoms | temperate | 10.1007/s10933-022-00247-8 | x | Sep-2022 | ||||||||||||||||||||||||||||||
88 | 2022 | van Vugt et al. 2022 | Pollen, macrofossils and sedaDNA reveal climate and land use impacts on Holocene mountain vegetation of the Lepontine Alps, Italy | 10.1016/j.quascirev.2022.107749 | x | nov.-2022 | |||||||||||||||||||||||||||||||||
89 | 2022 | von Hippel et al. 2022 | Long-term fungus-plant covariation from multi-site sedimentary ancient DNA metabarcoding | 10.1016/j.quascirev.2022.107758 | x | oct.-2022 | |||||||||||||||||||||||||||||||||
90 | 2022 | Wang et al. 2022 | Reply to : When did mammoths go extinct? | 10.1038/s41586-022-05416-3 | x | nov.-2022 | |||||||||||||||||||||||||||||||||
91 | 2022 | Wilmshurst & Wood 2022 | Paleoecological records inform conservation management in New Zealand | 10.22498/pages.30.1.26 | ? | may-2022 | |||||||||||||||||||||||||||||||||
92 | 2022 | Wygal et al. 2022 | Archaeological Recovery of Late Pleistocene Hair and Environmental DNA from Interior Alaska | terrestrial | plants/animals | 14 000 | terrestrial | na | temperate | na | na | metabarcoding | na | na | past | Methodology | 10.1080/14614103.2022.2031836 | Environmental Archaelogy | x | x | x | x | March-2022 | ||||||||||||||||
93 | 2022 | Zhang et al. 2022 | Ancient DNA reveals potentially toxic cyanobacteria increasing with climate change | cyanobacteria | 10.1016/j.watres.2022.119435 | x | Dec-2022 | ||||||||||||||||||||||||||||||||
94 | 2022 | Zavala et al. 2022 | Quantifying and reducing cross-contamination in single- and multiplex hybridization capture of ancient DNA | terrestrial | human | na | terrstrial | na | na | Custom protocol | 0.5 | metabarcoding | na | na | past | Methodology | 10.1111/1755-0998.13607 | Molecular Ecology Resources | 00 | x | 1-12 | x | April-2022 | ||||||||||||||||
95 | 2021 | Alsos et al. 2021 | Ancient sedimentary DNA shows rapid post-glacial colonisation of Iceland followed by relatively stable vegetation until the Norse settlement (Landnám) AD 870 | limnic | plants | 12 | terrestrial | climate, human settlement | subarctic | PowerSoil Power Lyser kit and incorporating a bead beating step | 3 | metabarcoding | trnL | na | past | Ecology | 10.1016/j.quascirev.2021.106903 | Quaternary Science Reviews | 259 | 106903 | 1 | x | 7-apr-21 | ||||||||||||||||
96 | 2021 | Armbrecht et al. 2021a | Paleo-diatom composition from Santa Barbara Basin deep-sea sediments: a comparison of 18S-V9 and diat-rbcL metabarcoding vs shotgun metagenomics | marine | diatoms | 11 000 | aquatic | na | temperate | DNeasy PowerLyzer PowerSoil | 0.25 | metabarcoding vs shotgun | 18S, rbcL | 130 bp, 76 bp | past | Methodology | 10.1038/s43705-021-00070-8 | ISME Commun | 1 | x | 66 | x | Dec-2021 | ||||||||||||||||
97 | 2021 | Armbrecht et al. 2021b | Hybridisation capture allows DNA damage analysis of ancient marine eukaryotes | marine | eukaryotes | na | aquatic | na | na | DNA Isolation Kit | 0.25 | hybridization capture | 18S, 16S | na | past | Methodology | 10.1038/s41598-021-82578-6 | Scientific Reports | 11 | 3220 | 1 | x | 5-mar-21 | ||||||||||||||||
98 | 2021 | Bjune et al. 2021 | Rapid climate changes during the Lateglacial and the early Holocene as seen from plant community dynamics in the Polar Urals, Russia | limnic | plants | 15 | terrestrial | climate | subarctic | DNeasy PowerSoil PowerLyzer (Qiagen) | na | metabarcoding | trnL | 50 | past | Ecology | 10.1002/jqs.3352 | Journal of Quaternary Science | x | x | x | x | Sep-2021 | ||||||||||||||||
99 | 2021 | Bairoliya et al. 2021 | Extracellular DNA in environmental samples: Occurrence, extraction, quantification, and impact on microbial biodiversity assessment | na | na | na | na | na | na | na | na | na | na | na | na | Review paper | 10.1128/AEM.01845-21 | Applied and Environmental Microbiology | x | ||||||||||||||||||||
100 | 2021 | Banerjee et al. 2021 | Reinforcement of Environmental DNA Based Methods (Sensu Stricto) in Biodiversity Monitoring and Conservation: A Review | na | na | na | na | na | na | na | na | na | na | na | na | Review paper | 10.3390/biology10121223 | Biology | 10 | 2 | 1223 | x | |||||||||||||||||
101 | 2021 | Brasell et al. 2021 | Lake microbial communities are not resistant or resilient to repeated large-scale natural pulse disturbances | limnic | bacteria | 1 | aquatic | earthquake | temperate | DNeasy PowerSoil Kit | 0.25 | metabarcoding | 16S | na | past | Ecology | 10.1111/mec.16110 | Molecular Ecology | 30 | 20 | 5137-5150 | x | oct.-2021 | ||||||||||||||||