| A | B | C | D | E | F | G | H | I | |
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1 | This is our introduction page for CoFest 2018, to help attendees find each other and organize into clusters. Please tell us all about yourself and what cluster(s) interest you. | ||||||||
2 | First Name | Last Name | Company | Work City | Work State | Work Country | GitHub username | Cluster(s) of Interest | Short Introduction |
3 | Adrienne | Stilp | University of Washington | Seattle | WA | US | |||
4 | Alain | Domissy | TSRI Center for Computational Biology | La Jolla | CA | US | |||
5 | Alejandra | Gonzalez-Beltran | Oxford e-Research Centre, Department of Engineering, University of Oxford, UK | Oxford | England | GB | |||
6 | Alex | Buchanan | Oregon Health & Science University | Portland | OR | US | buchanae | ||
7 | Alexandru | Mahmoud | Johns Hopkins University | Baltimore | MD | US | almahmoud | ||
8 | Anastasia | Tyryshkina | Penn State University | State College | PA | US | |||
9 | Andrey | Kartashov | CCHMC | Cincinnati | OH | US | |||
10 | Angel | Villahoz-Baleta | GOBii | Ithaca | NY | US | |||
11 | Anna | Ritz | Reed College | Portland | OR | US | |||
12 | Anthony | Bretaudeau | Inria Rennes Bretagne Atlantique | Rennes | FR | abretaud | Galaxy Genome Annotation | Working mainly on galaxy tools, and Galaxy/GMOD integration (jbrowse, chad, tripal, apollo, ...) | |
13 | Anton | Nekrutenko | Penn State | University Park | PA | US | |||
14 | ARTEM | BARSKI | CINCINNATI CHILDREN'S HOSPITAL | CINCINNATI | OH | US | |||
15 | Arthur | Eschenlauer | University of Minnesota - Twin Cities | St. Paul | MN | US | |||
16 | Aysam | Guerler | Johns Hopkins University | Baltimore | MD | US | |||
17 | Bastian | Greshake Tzovaras | openSNP / Open Humans | Berkeley | CA | US | |||
18 | Ben | Busby | NCBI | Bethesda | MD | US | dcgenomics | worldwide hackathon organization | running hackathons, visiting bioinformaticians program, and setting up data science talks and workshops |
19 | Ben | Carr | Curoverse Innovations | Somerville | MA | US | https://github.com/benjaminhccarr | ||
20 | Benjamin | Cordier | Oregon Health & Science University | Portland | OR | US | |||
21 | Bérénice | Batut | University of Freiburg | Freiburg | Baden Württemberg | DE | bebatut | Galaxy Training material | |
22 | Björn | Grüning | Uni-Freiburg | Freiburg | Baden Württemberg | DE | |||
23 | Bogdan | Gavrilovic | Seven Bridges Genomics | Belgrade | 11070 | RS | bogdang989 | CWL | |
24 | Brad | Chapman | Harvard Chan School | Boston | MA | US | https://github.com/chapmanb | bcbio CWL | An organizer of CoFest 2018 and developer hoping to make more tools, data, people and platforms work better together. |
25 | Brad | Langhorst | New England Biolabs | Ipswich | MA | US | |||
26 | Brad | Langhorst | New England Biolabs | Ipswich | MA | US | bwlang | galaxy user experience, bioconda, nextflow, uBam input, long reads | I've been working with Galaxy for many years and value it's contributions to opening best-practice analysis to everyone |
27 | Brandi | Davis-Dusenbery | Seven Bridges Genomics | Cambridge | MA | US | |||
28 | Brian | Repko | Novartis Institutes for Biomedical Research | Minneapolis | MN | US | brianrepko | First time as BOSC - have contributed before to Biojava - not sure what I'll work on | |
29 | Brian | Walsh | Oregon Health & Science University | Portland | OR | US | |||
30 | Caleb | Easterly | University of Minnesota | Minneapolis | MN | US | caleb-easterly | R Shiny in galaxy, CWL in galaxy, Bioconda | Galaxy-P team, tool developer and wrapper |
31 | Catherine | Karra | Free Geek Tech Support | Portland | OR | US | |||
32 | Charles | Strittmatter | FDA - CFSAN | College Park | MD | US | |||
33 | Charlotte | Whicher | REPOSITIVE, LTD | Cambridge | Cambs | GB | |||
34 | Chris | Ball | RTI International | Durham | NC | US | cmball1 | ||
35 | Chris | Mungall | Lawrence Berkeley National Laboratory | Berkeley | CA | US | |||
36 | Chuck | McCallum | Harvard Medical School | Boston | MA | US | mccalluc | CWL, visualization, docker, testing | Web developer, fairly new to bioinformatics, experience in library software (for books), QA |
37 | Colin | Diesh | UC Berkeley | Detroit | MI | US | https://github.com/cmdcolin | New hire on the JBrowse team but I have been involved in contributing for awhile :) | |
38 | Concarneau | amosse | French National Museum of Natural History | Concarneau | FR | ||||
39 | Cory | Maughmer | Center For Phage Technology at TAMU | College Station | TX | US | |||
40 | Cory | Maughmer | Texas A&M University - CPT | College Station | TX | US | moffmade | galaxy admin, genome annotation | Improving GMOD/Apollo integration and efficiency, Galaxy API enabled tools for external systems |
41 | Dan | Leehr | Duke University | Durham | NC | US | dleehr | CWL, HPC and Cloud scalable workflows | Informatics R&D at Duke GCB, interested in promoting computational reproducibility in cloud and HPC environments |
42 | Daniel | Blankenberg | Cleveland Clinic / CCLCM of Case Western Reserve University / Galaxy Team | Cleveland | OH | US | blankenberg | ||
43 | Daniel | Clarke | Mount Sinai | New York | NY | US | |||
44 | Daniel | Fornika | University of British Columbia | Vancouver | BC | CA | https://github.com/dfornika | CWL, Cloud Deployment, Provenance | Database & Application developer, working on the IRIDA project: https://www.irida.ca |
45 | Daniel | Katz | University of Illinois Urbana-Champaign | Champaign | IL | US | |||
46 | Daniela | Butano | University of Cambridge - Department of Genetics | Cambridge | GB | ||||
47 | Dannon | Baker | Galaxy Team | ATLANTA | GA | US | dannon | Galaxy UI, Galaxy Visualization | A CoFest organizer very interested in the Galaxy UI, Visualizations, and UX in general. |
48 | Dave | Bouvier | Penn State University | University Park | PA | US | |||
49 | Dave | Clements | Johns Hopkins University | Baltimore | MD | US | |||
50 | David | Johnson | Oxford e-Research Centre, Department of Engineering, University of Oxford, UK | OXFORD | GB | ||||
51 | David | Steinberg | UCSC | Santa Cruz | CA | US | |||
52 | Delphine | Lariviere | Pennsylvania State University | University Park | PA | US | |||
53 | Denis | Torre | Icahn School of Medicine at Mount Sinai | New York | NY | US | |||
54 | Destiny | Mullens | Texas A&M University | College Station | TX | US | destinymullens | Galaxy DAT, GTN, NIH Data Commons | |
55 | Dominique | Batista | Oxford e-Research Centre, Department of Engineering, University of Oxford, UK | Oxford | GB | ||||
56 | Enis | Afgan | Johns Hopkins University | Baltimore | MD | US | afgane | Deploying Galaxy | Working on deployments of Galaxy and other related applications. |
57 | Evan | Bolyen | Northern Arizona University | FLAGSTAFF | AZ | US | ebolyen | CWL, provenance, QIIME2 | QIIME 2 developer, interested in provenance, reproducable science, and accessible interface agnostic functionality. I'm coming to the conference to learn more about CWL and meet some of the awesome people in the Galaxy sphere. |
58 | Evan | Floden | Centre for Genomic Regulation | Barcelona | ES | ||||
59 | Farah Zaib | Khan | The University of Melbourne | Melbourne | VIC | AU | FarahZKhan | CWL, cwltool, provenance | Member of CWL organization | PhD researcher at University of Melbourne working on Provenance tracking of workflows | Teacher in spare time. |
60 | Francesco | Strozzi | ENTEROME | PARIS | FR | fstrozzi | OpenBio, Nextflow, Cloud Computing | ||
61 | Fred | Sapet | Biogemma | Clermont-Ferrand | FR | FredericBGA | galaxy user experience | Bioinformatician, galaxy admin. I would like to learn as an example how to do this : https://github.com/galaxyproject/galaxy/issues/4162. And discuss about that : https://github.com/galaxyproject/galaxy/issues/4668. First time here, not fluent in english... | |
62 | Frederik | Coppens | VIB | Gent | BE | frederikcoppens | |||
63 | Geet | Duggal | DNAnexus | Mountain View | CA | US | |||
64 | Geet | Duggal | DNAnexus | Mountain View | CA | US | geetduggal | CWL,WDL,Docker,Jupyter | Comp bio by training & developer @ DNAnexus. Lead the Developer Experience team. |
65 | Geraldine | Van der Auwera | Broad Institute | Cambridge | MA | US | |||
66 | Gerard | Lazo | USDA ARS | Albany | CA | US | grlazo | jbrowse | biologist in a computing world. |
67 | Hans-Rudolf | Hotz | Friedrich Miescher Institute | Basel | CH | hrhotz | sorry - I won't be able to attend | ||
68 | Hervé | Ménager | Institut Pasteur | Paris | FR | Research Software Engineer at #C3BI_Pasteur. Prob. interested in too many topics, including EDAM Ontology, CWL, Galaxy, Semantic Web applications, Usability, etc. | |||
69 | Hilmar | Lapp | Duke University | Durham | NC | US | |||
70 | Hiromu | Ochiai | National Cancer Center, Japan | Tokyo | JP | ||||
71 | Hsinyi | Tsang | National Cancer Insitute | Rockville | MD | US | stevetsa | containers, workflows, cancer, microbe, multiomics | First time at GCC, BOSC. Developing use cases on the National Cancer Institute Cloud Resources - https://cbiit.cancer.gov/ncip/cloudresources |
72 | Isma | Gilani | RENCI | Chapel Hill | NC | US | |||
73 | Jake | VanCampen | Stowers Institute | Kansas City | MO | US | |||
74 | James | Taylor | Johns Hopkins University | Baltimore | MD | US | jxtx | Galaxy UI/UX, Galaxy+CWL | I do Galaxy stuff. |
75 | Janaki | Gorla | Lenovo | Snohomish | WA | US | |||
76 | Janice | Patterson | Oregon Health and Science University | Portland | OR | US | patterja | Computational Biologist at OHSU, developing clinical sequencing workflows, developing in campus-wide instance of galaxy. | |
77 | Jared | Nedzel | Broad Institute | Cambridge | MA | US | |||
78 | Jason | Williams | Cold Spring Harbor Laboratory | Cold Spring Harbor | NY | US | JasonJWilliamsNY | Education, documentation, training, R/Rshiny, Jupyter | Interested in making tools easier for biologists to use |
79 | Jay | Pleyte | Oregon Health and Science University | Portland | OR | US | jPleyte | Interested in any OBF, Galaxy, or documentation efforts. | I work on a clinical informatics web application, at OHSU, which makes use of data once it has been run through a galaxy pipeline. I am now familiarizing myself with Galaxy and am interested in getting involved in development and documentation in any way i can help. |
80 | Jeffrey | Miller | University of Iowa - Iowa Institute of Human Genetics | Iowa City | IA | US | millerjl1701 | Galaxy Dev | Systems administrator working on galaxy automation and deployment |
81 | Jennifer | Hillman-Jackson | Galaxy Project/Penn State | Santa Cruz | CA | US | @jennaj | Galaxy DAT; GTN Tutorials; Ref Annotation | An organizer of Co-Fest 2018 and member of the GalaxyProject.org core team based at PSU. |
82 | Jeremy | Goecks | Oregon Health and Science University | Portland | OR | US | jgoecks | Galaxy, Machine Learning, Cancer, Visualization | Galaxy PI. I also lead a precision oncology informatics project. |
83 | Jeremy | Volkening | University of Wisconsin-Madison | Madison | WI | US | jvolkening | proteomics, galaxy admin, galaxy viz, nanopore tools | |
84 | Joachim | Wolff | Albert-Ludwig-University Freiburg | Freiburg im Breisgau | BW | DE | |||
85 | Jochen | Bick | ETH Zuich | Zurich | Zurich | CH | bimbam23 | ||
86 | Johannes | Köster | University of Duisburg-Essen | Essen | DE | ||||
87 | John | Bradley | Duke University | Durham | NC | US | johnbradley | CWL, provenance | Informatics R&D at Duke GCB, interested in learning ways to simplify workflow creation and collaboration |
88 | John | Chilton | Penn State | University Park | PA | US | https://github.com/jmchilton | Galaxy CWL Integration | |
89 | Jonathan | Sheffi | Google Cloud | Cambridge | MA | US | sheffi | Product Manager for Biomedical Data @ Google Cloud | |
90 | Karl | Sebby | xD Bio, Inc. | Kalispell | MT | US | |||
91 | KAUSHIK | GHOSE | Seven Bridges Genomics | Cambridge | MA | US | kghosesbg | CWL | |
92 | Kenzo-Hugo | Hillion | Institut Pasteur | Paris | FR | khillion | |||
93 | Kieran | O'Neill | BC Cancer | Vancouver | BC | CA | oneillkza | miRNA/isomiRs | |
94 | Kristin | Anderka | Broad Institute | Cambridge | MA | US | |||
95 | Krzysztof | Poterlowicz | University of Bradford | Bradford | West Yorkshire | GB | kpoterlowicz | Galaxy analysis and training | I am currently developing EWAS-Galaxy suite and integrating it with GTN materials https://github.com/kpbioteam/training-material/tree/ewas-suite |
96 | Kyle | Ellrott | Oregon Health & Science University | Portland | OR | US | |||
97 | Kyle | Ferriter | RENCI | Chapel Hill | NC | US | |||
98 | Kyle | Moad | In Silico Solutions | Falls Church | VA | US | kmoad | Developer working on variant annotator with karchinlab at JHU | |
99 | Lerone | LaTouche | Lenovo | Morrisville | NC | US | |||
100 | Logan | Miller | Center for Genome Research and Biocomputing | Corvallis | OR | US |