epiparameter_contributions

	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P	Q	R	S	T	U	V	W	X	Y	Z	AA	AB	AC	AD	AE	AF	AG	AH	AI	AJ	AK	AL	AM	AN	AO	AP	AQ	AR	AS	AT	AU	AV	AW	AX	AY	AZ	BA	BB	BC	BD
1	disease	pathogen	epi_distribution	author	year	sample_size	region	transmission_mode	vector	extrinsic	prob_distribution	inference_method	mean	mean_ci_limits	mean_ci_interval	sd	sd_ci_limits	sd_ci_interval	quantile_025	quantile_05	quantile_25	median	median_ci_limits	median_ci_interval	quantile_75	quantile_875	quantile_95	quantile_975	lower_range	upper_range	shape	shape_ci_limits	shape_ci_interval	scale	scale_ci_limits	scale_ci_interval	meanlog	meanlog_ci_limits	meanlog_ci_interval	sdlog	sdlog_ci_limits	sdlog_ci_interval	dispersion	dispersion_ci_limits	dispersion_ci_interval	precision	precision_ci_limits	precision_ci_interval	truncation	discretised	censorred	right_truncated	phase_bias_adjusted	notes	PMID	DOI
2	SARS	SARS-CoV-1	incubation_period	Lessler_etal	2009	157	Mixed	FALSE	NA	FALSE	lognormal	mle	NA	NA	NA	NA	NA	NA	NA	1.50	2.70	4.00	3.6, 4.4	95	5.9	NA	10.6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1.81	1.67, 1.95	95	NA	NA	NA	NA	FALSE	TRUE	FALSE	FALSE	Pooled analysis on several data sets, see Lessler et al. 2009 for references of datasets	19393959	10.1016/S1473-3099(09)70069-8
3	SARS	SARS-CoV-1	offspring_distribution	Lloyd-Smith_etal	2005	57	Singapore	FALSE	NA	FALSE	negative_binomial	mle	1.63	0.54, 2.65	90	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.16	0.11, 0.64	90	NA	NA	NA	NA	FALSE	FALSE	FALSE	FALSE	No additional notes	16292310	10.1038/nature04153
4	Mayaro	Mayaro virus	incubation_period	Caicedo_etal	2021	15	South America	vector-borne	TRUE	FALSE	lognormal	bayesian	3	2.4, 4.1	95	0.3	0.0, 2.1	95																															NA	FALSE	TRUE	FALSE	FALSE	Used data on travelers; units are in days	34081717	https://doi.org/10.1371%2Fjournal.pntd.0009418
5	Mayaro	Mayaro virus	generation_time	Caicedo_etal	2021	NA	South America	vector-borne	TRUE	FALSE		bayesian	15.2	11.7, 19.8	95	6.2	4.2, 9.5	95																															NA	FALSE	TRUE	FALSE	FALSE	Units are in days	34081717	https://doi.org/10.1371%2Fjournal.pntd.0009419
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12	See data dictionary: https://github.com/epiverse-trace/epiparameter/blob/6d8677d2132f994ceca521288a6d0dc2e7aadfe8/inst/extdata/data_dictionary.json
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