SPARC MINDS Experimental Metadata V1.0
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Metadata elementDescriptionExampleRestrictionsValue
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speciesSpecies studied; if more than one is included in the data set, add additional columnsMus musculusUse NCBI taxonomy for official names
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sexBiological sex of subject populationMale
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age categoryQualitative description of age categoryPrime adultAge categories derived from UBERON life cycle stages
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age range (min)Youngest numerical age of investigated subject (during the study and/or within subject group). Numerical value + unit (spell out), separated by a space21 days
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age range (max)Oldest numerical age of a subject (during the study and/or within subject group). Numerical value + unit (spell out), separated by a space57 days
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ageUse if all subjects are a single age. Numerical value + unit (spell out), separated by a space40 days
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disability/diseaseUse if subjects have been diagnosed with or are a model of a disease Polycystic kidney disease
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handednessPreference to use the right or left handRight
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strainStrain of animal used; if more than one, add additional columnsB6;129P-Nfkb1tm1Bal
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RRID for strainResearch Resource Identifier for the strain usedRRID:IMSR_MUGEN:M151002
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genotypeGenetic makeup of genetically modified alleles in transgenic animals belonging to the same subject grouptm1Bal
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specimenPhysical form of the specimen from which the data were extractedtissue, whole mount, cell
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specimen_anatomical_location
The organ, or subregion of organ from which the data were extractedArea postrema
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reference atlasName of atlas or other artifact used to determine anatomical locationsPaxinos, G., Watson, C. The Rat Brain in Stereotaxic Coordinates
7th Edition, Academic Press, 2013
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protocol titleTitle of the protocol in Protocols.ioA protocol for uploading protocols to protocol.io
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protocol.io locationLink to protocol in Protocols.io. At time of upload, this protocol must be shared with the SPARC group. When the data set is published, the protocol should be published with a DOI.https://www.protocols.io/view/protocol-for-adding-protocols-to-protocols-io-wgmfbu6
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experimental log file name
FIle containing experimental records
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softwareName of software used during experiment. If more than one, please add additional columnsNeurolucida 360
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software versionVersion of software used2018.2.1
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software vendorCreator and maintainer of softwareMicrobrightfield
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software URLLink to softwarehttps://www.mbfbioscience.com/neurolucida360
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software RRIDResearch Resource Identifier for software toolsRRID:SCR_001775
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