COVID-19 Map - Contributors
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NameEmailInstitutionCountryOffered contributionSub-groupCurationTool (curation)ModellingDataDomain expert / Advice on contentOtherComments
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Abdul Jarrahajarrah@aus.eduAmerican University of SharjahAEModelingModelling
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Ahmed Hemedanahmed.hemedan.001@student.uni.luBioinformatics core unit, LCSB, University of LuxembourgLUModelling, Network analysisModelling, Network analysisModelling
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Akira Funahashifuna@bio.keio.ac.jpKeio UniversityJPCuration in CellDesigner, and support of using CellDesigner.CurationCurationCellDesignerAs I am a developer of CellDesigner, I might be able to support users on technical issues.
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Alex Picoalex.pico@gladstone.ucsf.eduGladstone InstitutesUSWikiPathways curations; OCR on published pathway figuresCuration, Data intgeration, ModelingCurationWikiPathwaysModellingData221 pathway figures from CORD-19 dataset. PMCIDs are part of filenames.
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Alexander Kelalexander.kel@genexplain.comgeneXplainDEAnalysis of omics data and modeling of signal transduction and gene regulatory networksModelling, Network analysisModelingDataPathway analysis, promoter analysis
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Alexander Mazeinalexander.mazein@uni.luUniversity of LuxembourgLUCuration in CellDesignerCuration, OrganisationCurationCellDesigner
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Alexandra Levinali.levin12@gmail.comCardiff UniversityUKCurationT-cell immunology, antigen presentation
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Alfonso Valenciaalfonso.valencia@bsc.esBarcelona Supercomputing CenterESPresonalized Medicine, Bioinformatics, Machine LearningCuration, ModellingCurationModelling
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Alina Renzrenz@informatik.uni-tuebingen.deUniversity of TübingenDEhttps://identifiers.org/biomodels.db/MODEL2003020001CurationCuration
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Alper Karakayaalper.karakaya@gmail.comDüzen Biological Sciences R&D and Production CompanyTR
Biotechnology, Bioprocessing, Biomedicine, Medical software and hardware development
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Ana Conesaaconesa@ufl.eduUniversity of FloridaUStext-mining. Analysis of any available gene expression and epigenomics dataModeling, Data integrationPadhoc (unpublished)PaintomicsPathway analysis and multiomics integration
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Andjela Tatarovictatarovicandjela@gmail.comCAPoster design / visualizing dataVisualization, Scientific illustrations
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Andras Hartmannandras.hartmann@gmail.comInstitute for Globally Distributed Open Research and Education - IGDOREFRModeling, Data integration
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Andre Falcaoaofalcao@fc.ul.ptUniversity of LisbonPTOmics, Molecule-protein interaction. Target and ligand identification. Ontologies annotation and processing Curation, Modeling, ValidationModelling
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Andrea Gelemanovicandrea.gelemanovic@medils.hrMediterranean Institute for Life Sciences (MedILS)HRText mining/omics data analysisText mining, Data integraion
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Andrea Senff-Ribeirosenffribeiro@gmail.comOICR, Toronto, Canada / UFPR, Curitiba, BrazilCA, BRLiterature revision and curationReactome
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Andreas Drägerdraeger@informatik.uni-tuebingen.deUniversity of TübingenDEhttps://identifiers.org/biomodels.db/MODEL2003020001CurationCuration
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Andreas Rueppandreas.ruepp@helmholtz-muenchen.deHelmholtz Zentrum MünchenDELiterature CurationCurationCuration
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Andres Metspaluandres.metspalu@ut.eeEstonian Genome Centre, Institute of Genomics, University of TartuEEGenomics, OMICS outreachCuration, Data integration, GenomicsLteratureData
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Angela Bauchangela.bauch@biomax.comBiomax Informatics AGDELiterature mining, AI based Question-Answering user interfaceLiterature mining, Data integration
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Anil Wipatanil.wipat@ncl.ac.ukNewcastle UniversityUKWe currently have a mix of microbiologists and bioinformaticians looking at targets and drugs so are happy to curate and integrate data. Also working jointly with Carole Goble (below) so range of resources can be contributed from ELIXIR-UKCuration, Data integrationCurationRepotrialDB (unpublished) + ELIXIR resourcesDataData integration/drug repurposing/network modelling
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Anna Niarakisanna.niaraki@univ-evry.frUniversity of Evry, Paris-SaclayFRCuration in CellDesigner, map construction, modelling, RA map for recycling partsCuration, ModellingCurationCellDesignerModellingComputational Systems Biology, Biochemistry, expert in autoimmune and connective tissue diseasesWe can CaSQ the FluMap and upload it to Cell Collective
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Antony Williamswilliams.antony@epa.govUS Environmental Protection Agency (ex-ChemSpider)USChemical curation, Chemistry data, Literature curation, text-mining, integration to drug dataCuration, Data intgerationCurationData
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Aradhana Chaturvediaradhana.chaturvedi2309@gmail.comSGSITSINNLP,GraphModelling,Text analytics,Graph
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Arnau Montagudarnau.montagud@bsc.esBarcelona Supercomputing CenterESPersonalized modelling fo boolean netwroks. Multi-scale modelling of cellular systemsCuration, ModellingCurationModelling
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Arthur GoldbergArthur.Goldberg@mssm.eduIcahn School of Medicine at Mount SinaiUSModeling, data integration, software engineeringModelingModelling
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Atanu Kumar Duttaatanu.dutta05@gmail.comAll India Institute of Medical Sciences KalyaniINGenomics, Data mininggnomADHost Genetics
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Augustin Lunaaluna@jimmy.harvard.eduHarvard Medical SchoolUSCuration and text mining Curation, Data intgerationCurationCellDesigner/Newt/SBGN-ED
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Aurelien Naldiaurelien.naldi@gmail.comINRIA SaclayFRColomoto pipelines for logical modellingModellingbioLQM, GINsim
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Aurelio Orta-Resendizaurelio.orta-resendiz@pasteur.frInstitut PasteurFRLiterature curation/entry, replication cycle, assembly/clinical integrationDomain expertise (MD/virology/immunology)CurationLiterature curation
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Bakri M Assasmassas@kau.edu.saUniversity of King AbulAzizSABiological Sceinces
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Barbara Braunerbarbara.brauner@helmholtz-muenchen.deHelmholtz Zentrum MünchenDE
Literature Curation, Calcium homeostasis, mitochondrial dysfunction, ER stress
CurationCuration
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Ben Wigginsbwiggins@ic.ac.ukImperial College London UKLiterature mining: Innate and adaptive immune responses to covid-19Biological Sciences
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Benjamin Gyoribenjamin_gyori@hms.harvard.eduHarvard Medical SchoolUSData Integration, Modelling
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Benjamin Scottbenjamin.scott@nist.govUniversity of Maryland Associate at NISTUSLiterature curation, and investigating human proteome for potential nsp5 cleavage sitesCuration, modelingProtein science/molecular biologyProteases and protease inhibitors
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Bertrand Boutronbboutron@eisbm.orgEuropean Institute for Systems Biology and MedicineFRExpertise in physiology, trauma and stress managementModeling, Data integration, Domain expert knowledgePhysiology, Trauma, Stress Management
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Bertrand De Meulderbdemeulder@eisbm.orgEISBMFROmics and clinical data analysis/representation, methods Modelling, Network analysisCurationNetwork analysisData
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Bhanwar Lal Puniyabpuniya2@unl.eduUniversity of Nebraska LincolnUSAmodeling, data analysis, data integrationmodeling, data analysismodeling Data
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Bijay Jassalbijay.jassal@gmail.comOntario Institute for Cancer Research (afflilation)UKDrug curation across Reactome pathways, data dumpsDrug Curation, Data integrationCurationReactomeData
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Bryan Ariasbryan.arias@pasteur.frInstitut Pasteur, ParisFRCuration
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Carlos Vegacarlos.vega@uni.luUniversity of LuxembourgLUText-MiningBioKC
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Carole Goblecarole.goble@manchester.ac.ukUniversity of Manchester / ELIXIRUKI can help coordinate efforts in ELIXIR UK and provide tech support for FAIRDOMHub and Rightfield (spreadsheet) based curationCuration, Data integrationELIXIR-UK resources, FAIRDOMHub, WorkflowHubDataData infrastructure, workflow systems
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Charles Auffraycauffray@eisbm.orgEISBMFRLiaising with clinicians, journals and funding agenciesEditorial Committee, Dissemination, FundingEditorial Committee/Dissemination/Funding
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Chris Evelochris.evelo@maastrichtuniversity.nlMaastricht UniversityNLWikiPathways curation/Omic data integrationCuration, Data integrationCurationWikiPathwaysData
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Christos Ouzounisouzounis@certh.grCERTHGRWe are looking at ORFs of unknown function, plus drug targets and comp chem simulationsCuration, ModellingGreece task force
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Corinna Montronec.montrone@helmholtz-muenchen.deHelmholtz Zentrum MünchenDELiterature Curation, renin-angiotensin systemCurationCuration
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Cristina Casalscristina.casals@sib.swissSwiss Institute of BioinformaticsCHCurationCurationUniprotKB/Swiss-ProtMolecular and cellular biology, functionnal annotation
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Cristobal Monrazluis-cristobal.monraz@curie.frInstitute CurieFRLiterature Curation Activation of Endoplasmic Reticulum Stress and Innate Immune ResponseCurationCurationCell Designer
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Daniela Börnigend.boernigen@uke.deUniversity Medical Center Hamburg-Eppendorf (UKE)DECurationCuration
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Daniele Pugliesid.pugliesi@engineer.comITCreating or improving scientific illustrations in SVG formatVisualization, Scientific illustrations, CurationCurationInkscapeScientific illustrationsexamples of pictures I have created: https://it.wikipedia.org/wiki/Utente:Daniele_Pugliesi/Sandbox/47
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David (Andre) Nickersond.nickerson@auckland.ac.nz
Auckland Bioengineering Institute, University of Auckland,
NZModeling, Data integration
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David Courtneydavid.courtney@pasteur.frInstitut PasteurFRLiterature curation of post transcriptional control and HCoVCurationCurationLiterature curation
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Derek WrightDerek.Wright@glasgow.ac.ukMRC-University of Glasgow Centre for Virus ResearchUKModeling, data science, software/web development, BioPAXModelingyEdModeling
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Dezso Modosdezso.modos@quadram.ac.ukQuadram Institute BioscienceUKI can work on network based simulations, data integrations of single cell RNAseq data (with fellow bioinformaticans)Data Integtration, ModellingModellingData
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Diane Lefaudeuxdlefaudeux@ucla.eduUniversity of California Los AngelesUSMechanistic modelingModelingModelingMechanistic Modeling, bioinformatics, RNAseq
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Dieter Maierdieter.maier@biomax.comBiomax Informatics AGDELiasing, interoperability, data source evaluationKnowledge management
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Dnyanada Gokhalednyanada.gokhale-agashe@uwa.edu.auUniversity of Western AustraliaAUCuration of genomic data, variant association analysis, mining of clinically important genetic variants, help with literature mining and curation of clinical data.Curation, Data integration, GenomicsCurationLiterature curationHuman genetics / Microbiology / Molecular Biology
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Duygu Dede Şenerd.dedesener@maastrichtuniversity.nlMaastricht UniversityNLMulti-omics data analysis and pathway creation & analysisCuration, Data integrationCurationWikiPathwaysData
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Ebru Kocakayakocakayaebru@gmail.comAnkara UniversityTRCuration in Cell Designer
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Egon Willighagenegon.willighagen@maastrichtuniversity.nlMaastricht UniversityNLWikidata data integration, WikiPathwaysCuration, Data integrationCurationWikiPathwaysDatahttps://www.wikipathways.org/index.php/Pathway:WP4846
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Emanuela Giombiniemigio@gmail.comNational Institute for Infectious Diseases "L.Spallanzani"IT3D protein model of Spike glycoprotein, omics data analysisModelling, Network analysisSwiss PDB Modelling3D protein modeling
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Emek Demirdemire@ohsu.eduOHSUUSNLP and Crowdsourcing, access to Pathway Commons and other networksIntegrationCurationNewt/Factoid
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Emily AckermanEEA16@pitt.eduUniversity of PittsburghUSCurationCuration
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Emily Dziedzicemily.dziedzic@oregonstate.eduOregon State UniversityUSGraphic design for illustrating scientific models and conceptsVisualization, Scientific illustrationsGraphic Design/Scientific Illustration
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Emma Schymanskiemma.schymanski@uni.luUniversity of LuxembourgLUIf you need any form of chemical (small molecule) contribution, Marek knows where to find me.Data integration
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Enrico Glaabenrico.glaab@uni.luUniversity of LuxembourgLULiterature curation, data integationCuration, Data integrationCurationCellDesigner, Literature CurationBioinformatics, Pathway analysis
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Falk SchreiberFalk.Schreiber@uni-konstanz.deUniversity of KonstanzDEcuration in SBGN (SBGN-ED), map construction, omics data integration, modelling (when data is available)Curation, ModelingCurationSBGN-EDModellingData integration, network biology/analysis, visualisation
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Felicia Burtscherfelicia.burtscher@uni.luUniversity of LuxembourgLU
Map construction, Modelling and parameter integration, data integration, ML
Curation, Modelling
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Francesco Messinafrancesco.messina@inmi.itNational Institute for Infectious Diseases "L.Spallanzani"ITModeling, explorative HCoV-host interactome analysis, omics data analysisDomain expertise (MD/virology/immunology), Modelling, Network analysisWikiPathway/ReactomeModelling
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Francesco Nicola Lauriafrancesco.lauria@inmi.it ; fnicola46@gmail.comNational Institute for Infectious Diseases "L.Spallanzani"ITwide experience on clinical aspect in severe respiratory syndroms, caused by viral infections, disease managdementDomain expertise (MD/virology/immunology), Curation, Knowledge integrationCurationLiterature
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Francesco Vairofrancesco.vairo@inmi.itNational Institute for Infectious Diseases "L.Spallanzani"ITKnowledge integration from clinical and epidemiological informationDomain expertise (MD/virology/immunology), Curation, Knowledge integration
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Friederike Ehrhartfriederike.ehrhart@maastrichtuniversity.nlMaastricht UniversityNLWikiPathways creation and curation, omics data integration (when available), genetic variant data integration (when available)Curation, Data integration, Knowledge integrationCurationWikiPathwaysDataKnowledge integrationhttps://www.wikipathways.org/index.php/Pathway:WP4799; https://www.wikipathways.org/index.php/Pathway:WP4846
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Gerardo Tauriellogerardo.tauriello@unibas.chSwiss Institute of BioinformaticsCHContact within the SWISS-MODEL team for any needs for data of 3D structures for proteins of interestSWISS-MODEL3D structure homology modellingData
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Ghjuvan Grimaudgm.grimaud@biomathematica.comBiomathematicaFRPathways reconstruction, mechanistic models, dynamical models, multiscale models, metabolic modelsCuration, ModelingCurationCellDesigner/COBRAModelingDataSystems biology, ODEs, GEMs
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Gianni Cesarenicesareni@uniroma2.itUniversity of Rome Tor VergataITAnnotation of literature evidence in SIGNOR, Logic modleing of cell pathway perturbation after viral infectionCuration, Data integrationCurationSIGNORCausal interactions, Logic modeling, data retrieval and integration
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Gina Crovettoginacrovetto@gmail.comCALiterature curation, scientific Illustration, poster design, data anylsis,Curation, illustration, analysisCurationCellular and molecular biology, cancer biology, scientific illustration, translational research
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Giorgos TsapparellasG.Tsapparellas@ljmu.ac.ukLiverpool John Moores UniversityUKAir Quality, Literature curation, data analysis/integration, AI, MLData integrationData
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Gisela Fobog.fobo@helmholtz-muenchen.deHelmholtz Zentrum MünchenDELiterature Curation, renin-angiotensin systemCurationCuration
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Goar Frischmanngoar.frischmann@helmholtz-muenchen.deHelmholtz Zentrum MünchenDELiterature Curation, SARS-CoV-2 coagulation pathwayCurationCuration
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Gökçe Yağmur Summakgokcesummak@gmail.comAnkara UniversityTRCuration in CellDesignerCurationCurationCellDesigner
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Hanna Borlinghaushanna.borlinghaus@uni-konstanz.deUniversity of KonstanzDEcuration in SBGN-ED, map construction, data analysisCurationCurationSBGN-ED
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Henning Hermjakobhhe@ebi.ac.ukEMBL-EBIUKTargeted curation across molecular interactions/pathways/mathematical models. Also custom illustrations in "Reactome-style"Curation, Knowledge integrationCurationReactome/IntAct/BioModelsIllustrations
84
Hesamaddin Shirzad-AskiShirzad.hessam1364@gmail.comGolestan University of Medical SciencesIR
help with literature mining and curation of clinical data; Literature mining, Risk factor association of COVID-19 to Kidney failure; systematic review articles; epidemiology
Curation
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Hiroaki Kitanokitano@sbi.jpSystems Biology Institute / npj Systems Biology and ApplicationsJPGeneral support / Publication platform (npj Systems Biology and Applications)General support, Publication platformGeneral support / Publication platform
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Hkimi Chaimahkimichaima27@gmail.comInstitut Pasteur de Tunis/UTMTN
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Houcemeddine Othmanhoucemoo@gmail.comUniversity of the Witwatersrand SAData analysis workflow development, biomolecular structural analysis, text mining, pharmacogenomicsCuration, text mining, data integration, modelingCurationLitterature curation3D structural modelingbioinformatics, biomolecular simulation
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Ilda Hoxhajilda.hoxhaj1@unicatt.itUniversità Cattolica del Sacro CuoreITPersonalized medicine, literature curation, health technology assessmentCurationCurationLiterature curation
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Imen Rabhiymen.re@gmail.comInstitut Pasteur de Tunis/University of ManoubaTNNetwork and data integration, multi Proteomic analysisSystems biology
90
Inna KupersteinInna KupersteinInstitute CurieFRInna KupersteinInna KupersteinInna KupersteinInna KupersteinInna KupersteinInna KupersteinInna KupersteinInna KupersteinInna Kuperstein
91
Irina Balauririnaa.balaur@gmail.comUniversity of LuxembourgFRModeling, data integration, software engineeringModelling, Network analysisModelling
92
Isaure Chauvot de Beaucheneisaure.chauvot-de-beauchene@loria.frCNRS, LORIAFR3D modeling of protein - nucleic acids and protein - protein complexesModelling, Network analysis3D molecular modelinglooking for relevant targets for inhibitors of protein - protein/nucleic-acids interactions
93
Jakob Vanhoeferjakob.vanhoefer@uni-bonn.deUniversity of BonnDE
Curation in CellDesigner, map construction, modelling and parameter estimation
Curation, ModellingCurationCellDesignerModelling
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Jamal Nasirjamal.nasir@northampton.ac.ukUniversity of NorthamptonUKGenetics data analysis, pathophysiology, clinical aspectsData integration, curation, modellingCurationReactomeModellingDataGenetics, Pathology, Clinical Sciences
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Jan Hasenauerjan.hasenauer@uni-bonn.deUniversity of BonnDECuration in CellDesigner, map construction, modelling and parameter estimationCuration, ModellingCurationCellDesignerModelling
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Janet Piñerojanet.pinero@upf.eduHospital del Mar Research InstituteES
Annotation of entities (genes, variants) with disease phenotypes from DisGeNET; text mining of literature
Data integrationDisGeNET
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Jason E. Shoemakerjason.shoemaker@pitt.eduUniversity of PittsburghUSWe currently have several members with good knowledge of the cGAS, TLR and RIG-I pathway dynamics, all of which play regulatory roles in viral infection.CurationCuration
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Jean KrivineJkrivine@irif.frCNRSFRModeling of combinatorial protein interactions, cell signallingModeling, Simulation of protein-protein interactionsPPI
99
Jean-Marie Raveljean.marie.ravel@gmail.comUniversité de LorraineFRRegulated cell death / autophagyData integrationCurationCellDesignerregulated cell death / autophagy
100
Jeremy Teutonjeremy.teuton@pnnl.govPacific Northwest National LaboratoryUSCuration and review of viral pathogenesis pathwaysCurationCurationNewtEditorVirology