| A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z | AA | AB | AC | AD | AE | AF | AG | AH | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Sample ID (suffix is "_d" if the data are damage-restricted | Analysis Label (grouping individuals of similar ancestry across diverse regions) | ENA link | Reich Lab Y chromosome haplogroup | Newly analyzed Y haplogroup (YFull link) (search for the sheet with calls for an individual sample using the Sample ID in entire cell using the Find and Replace function) | Average of 95.4% date range in calBP (defined as 1950 CE) | Date: One of two formats. (Format 1) 95.4% CI calibrated radiocarbon age (Conventional Radiocarbon Age B, Lab number) e.g. 5983-5747 calBCE (6980±50 B B, Beta-226472). (Format 2) Archaeological context date B, e.g. 2500-1700 BCE | Location | mtDNA haplogroup | Study in which DNA was published | Split Label (grouping individuals of similar ancestry by site) | Country | Broad Geographic Region (Genetic clustering may sometimes differ) | Latitude | Longitude | Skeletal code | Master ID | Skeletal element | Data type | 14C date(s) that are newly published in this study | Broad chronological / archaeological period | Passed all analysis filters | Sex | Whole genome SNPs (number of 1,150,639 targeted autosomal SNPs covered by at least once sequence) | Whole genome average coverage across 1,150,639 targeted autosomal SNPs | X-contamination point estimate from ANGSD on non-damage-restricted data if male and ≥200 SNPs | X-contamination Z-score from ANGSD on non-damage-restricted data if male and ≥200 SNPs | Library ID(s) | UDG treatment by library (minus=untreated; half=treated except in last nucleotides; plus=treated over all nucleotides) | damage by library in sequences aligning to nuclear targets | mtDNA match rate to consensus by library (for all sequences and thus without damage restriction) | Assessment of data quality (notes in parentheses included if match rate to the mtDNA consensus sequence is <0.95 or X chromosome contamination estimate in males is significantly non-zero, or ratio of sequences matching Y and X chromosome is unexpected for a male or female) | Y chromosome determination strategy | Associated authors if this is a newly reported sample | |
124 | I11041 | Indus_Periphery2 | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324743/I11041.bam | R | R2 | 4006 | 2140-1972 calBCE (3675±25 BP, PSUAMS-4603) | Gonur | R2 | This study | Gonur2_BA | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonur tomb 3225, skeleton 3, UfaNov17-003 | I11041 | tooth | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | 2140-1972 calBCE (3675±25 BP, PSUAMS-4603) | BA | Yes | M | 128105 | 0.115931 | n/a (<200 SNPs) | n/a (<200 SNPs) | S11041.E1.L1 | half | 0.113 | 0.985 | PASS | manual | James Mallory, Nadezhda Dubova | |
125 | I10409 | Indus_Periphery3 | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324744/I10409.bam | H1a1d2 | M2826>M69>M52>M82>M2914>Z4361 | 4112 | 2280-2044 calBCE (3755±25 BP, PSUAMS-4599) | Gonur | R5a2b | This study | Gonur2_BA | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonur tomb 3225, skeleton 1, UfaNov17-004 | I10409 | tooth | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | 2280-2044 calBCE (3755±25 BP, PSUAMS-4599) | BA | Yes | M | 107688 | 0.097283 | n/a (<200 SNPs) | n/a (<200 SNPs) | S10409.E1.L2 | half | 0.132 | 0.995 | PASS | automatic | James Mallory, Nadezhda Dubova | |
126 | I8726 | Indus_Periphery4 | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324745/I8726.bam | J2a1h | L25>F3133>Y15604 | 5000 | 3100-3000 BCE | Seistan, Shahr-i Sokhta | U2c1 | This study | Shahr_I_Sokhta_BA2 | Iran | Iran / Turan | 30.649857 | 61.400311 | 201, Grave 201, LS 1, Period I, phases 10/9 | I8726 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | BA | Yes | M | 615135 | 1.07642 | 0.007786 | 2.69511456 | S8726.E1.L1 | half | 0.131 | 0.995 | PASS (Xcontam=0.008) | automatic | Massimo Vidale, Alfredo Coppa | |
127 | I11480 | Indus_Periphery6 | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324747/I11480.bam | J | J-Y33893? | 4800 | 2900-2800 BCE | Seistan, Shahr-i Sokhta | W6 | This study | Shahr_I_Sokhta_BA2 | Iran | Iran / Turan | 30.649857 | 61.400311 | 424, IRR Grave 22e (Central-E), Period I/II, phases 8-7 | I11480 | petrous | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | no 14C date | BA | Yes | M | 20314 | 0.017204 | n/a (<200 SNPs) | n/a (<200 SNPs) | S11480.Y1.E1.L1 | half | 0.071 | .. | PASS | automatic | Massimo Vidale, Alfredo Coppa | |
128 | I11458 | Indus_Periphery7 | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324748/I11458.bam | F | P1 / Q-F1213? | 4600 | 3200-2100 BCE | Seistan, Shahr-i Sokhta | .. | This study | Shahr_I_Sokhta_BA2 | Iran | Iran / Turan | 30.649857 | 61.400311 | 400, Grave 405 | I11458 | petrous | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | no 14C date | BA | Yes | M | 30098 | 0.025536 | n/a (<200 SNPs) | n/a (<200 SNPs) | S11458.Y1.E1.L1 | half | 0.191 | .. | PASS | manual | Massimo Vidale, Alfredo Coppa | |
129 | I8728 | Indus_Periphery9 | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324750/I8728.bam | J2a | L26>PF5160>PF5172>S26364>Z6082 | 4500 | 2600-2500 BCE | Seistan, Shahr-i Sokhta | R7 | This study | Shahr_I_Sokhta_BA2 | Iran | Iran / Turan | 30.649857 | 61.400311 | 303C, T.303C, Period II, phase 5B | I8728 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | BA | Yes | M | 657401 | 1.141412 | 0.006652 | 2.554277436 | S8728.E1.L1 | half | 0.082 | 0.997 | PASS (Xcontam=0.007) | automatic | Massimo Vidale, Alfredo Coppa | |
130 | I11459 | Indus_Periphery10 | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324739/I11459.bam | H1a1d2 | M2826>M69>M52>M82>M2914>Z4361 | 4703 | 2875-2631 calBCE (4150±25 BP, PSUAMS-5715) | Seistan, Shahr-i Sokhta | W3a1b | This study | Shahr_I_Sokhta_BA2 | Iran | Iran / Turan | 30.649857 | 61.400311 | 401, IRW Grave 10, Period II (late), phase 5B | I11459 | petrous | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | no 14C date | BA | Yes | M | 325684 | 0.386443 | 0.006188 | 0.8825764043 | S11459.Y1.E1.L1 | half | 0.134 | .. | PASS | automatic | Massimo Vidale, Alfredo Coppa | |
131 | I11460 | Indus_Periphery12_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324741/I11460.bam | BT | J2 | 4600 | 3200-2100 BCE | Seistan, Shahr-i Sokhta | H2a | This study | Shahr_I_Sokhta_BA2_LowCov | Iran | Iran / Turan | 30.649857 | 61.400311 | 404, IRQ Grave 31 | I11460 | petrous | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | no 14C date | BA | No | M | 5481 | 0.004608 | n/a (<200 SNPs) | n/a (<200 SNPs) | S11460.Y1.E1.L1 | half | 0.053 | .. | PASS | automatic | Massimo Vidale, Alfredo Coppa | |
132 | I3389 | Central_Steppe_MLBA | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324669/I3389.bam | .. | Z2124 | 3600 | 1900-1400 BCE | Krasnoyarsk Krai, near Orak Ulus, Orak burial place | H27+16093 | This study | Krasnoyarsk_MLBA | Russia | Forest / Steppe | 55.1924 | 89.3053 | StPet56, collection 3390, individual 4 | I3389 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | MLBA | Yes | M | 822898 | 4.6 | 0.003084 | 3.815294233 | S3389.E1.L2 | half | 0.049 | 0.98 | PASS (Xcontam=0.003) | .. | Vyacheslav Moiseyev | |
136 | I6117 | BMAC_1d.rel.I1781_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324617/I6117.bam | .. | 4000 | 2500-1600 BCE | Gonur | T | This study | Gonur1_BA_1d.rel.I1781_LowCov | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonur tomb 3037 sample 4 | I6117 | tooth | separate nuclear and mtDNA target enrichment | no 14C date | BA | No | M | 9040 | 0.007634 | n/a (<200 SNPs) | n/a (<200 SNPs) | S6117.E1.L1 | half | 0.083 | 0.971 | QUESTIONABLE (sex.intermediate=0.051) | .. | James Mallory, Nadezhda Dubova | ||
140 | I12293 | Ksirov_H_Kushan | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324752/I12293.bam | .. | 2000 | 200 BCE - 100 CE [based on other dates from same site] | Ksirov | U2e1e | This study | Ksirov_H_Kushan | Tajikistan | Iran / Turan | 37.41563 | 68.17371 | UfaNov17-052, Ksirov 1979, kurgan 8 (SE group), Ksirov III | I12293 | tooth | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | IA | Yes | M | 25750 | 0.021724 | n/a (<200 SNPs) | n/a (<200 SNPs) | S12293.E1.L1 | half | 0.107 | 0.943 | QUESTIONABLE (mtcontam=0.943) | .. | James Mallory, Nadezhda Dubova | ||
141 | I12257 | Ksirov_H_Kushan_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324756/I12257.bam | .. | 2000 | 200 BCE - 100 CE [based on other dates from same site] | Ksirov | J1b6 | This study | Ksirov_H_Kushan_LowCov | Tajikistan | Iran / Turan | 37.41563 | 68.17371 | UfaNov17-053, Ksirov 1984, kurgan 7, enclosure 3, Ksirov III | I12257 | tooth | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | IA | No | M | 5106 | 0.004229 | n/a (<200 SNPs) | n/a (<200 SNPs) | S12257.E1.L1 | half | 0.077 | 0.991 | PASS | .. | James Mallory, Nadezhda Dubova | ||
142 | I2312_all_d | Belt_Cave_M | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324566/I2312_all_d.bam | J2a2 | PF5008 | 11950 | 12000-8000 BCE | Alborz Mountains, near Behshahr, Belt Cave | K2a | This study | Belt_Cave_M | Iran | Iran / Turan | 35.59 | 53.5 | Belt4S | I2312 | bone (phalanx) | separate nuclear and mtDNA target enrichment | no 14C date | M / N | Yes | M | 30722 | 0.026067 | n/a (<200 SNPs) | n/a (<200 SNPs) | S2312.E1.L1,S2312.E1.L7 | minus,half | 0.17,0.049 | 0.678,.. | PASS (damage.restricted: sex.intermediate=0.242-0.273,mtcontam=0.678,) | .. | Janet Monge | |
146 | I1949 | Ganj_Dareh_N | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324698/I1949.bam | .. | R2>Y3399 | 10052 | 8241-7962 calBCE (8915±40 BP, PSUAMS-2261) | Ganj Dareh | .. | This study (supplement of Lazaridis Nature 2016) | Ganj_Dareh_N | Iran | Iran / Turan | 34.45 | 48.116 | GD37 | I1949 | petrous | separate nuclear and mtDNA target enrichment | previously published 14C date | M / N | Yes | M | 149362 | 0.141247 | n/a (<200 SNPs) | n/a (<200 SNPs) | S1949.E1.L1,S1949.E1.L2,S1949.E1.L3 | half,half,half | 0.073,0.102,0.1 | ..,0.93,0.952 | QUESTIONABLE (mtcontam=0.930-0.952) | manual | Christopher Meiklejohn, Deborah Merrett | |
185 | I1945 | Ganj_Dareh_N | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324699/I1945.bam | .. | R2>Y3399 | 9800 | 8000-7700 BCE | Ganj Dareh | J1c10 | This study (supplement of Lazaridis Nature 2016) | Ganj_Dareh_N | Iran | Iran / Turan | 34.45 | 48.116 | GD16 | I1945 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | M / N | Yes | M | 247405 | 0.242441 | n/a (<200 SNPs) | n/a (<200 SNPs) | S1945.E1.L2,S1945.E1.L3 | half,half | 0.084,0.08 | 0.915,0.894 | QUESTIONABLE (mtcontam=0.894-1.000) | manual | Christopher Meiklejohn, Deborah Merrett | |
193 | I12980 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324842/I12980.bam | .. | 2850 | 1000-800 BCE | Swat Valley, Loebanr | D4j1b | This study | Loebanr_IA | Pakistan | South Asia | 34.75146111 | 72.40193611 | Grave 145, single burial , 709 | I12980 | petrous | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | LBA / IA | Yes | M | 24259 | 0.020434 | n/a (<200 SNPs) | n/a (<200 SNPs) | S12980.Y1.E1.L1 | half | 0.168 | 0.849 | QUESTIONABLE (mtcontam=0.849) | .. | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | ||
194 | I3453 | Tasbas_LBA_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324956/I3453.bam | A | 3130 | 1264-1095 BCE (2940±30 BP, OS-97173, layer date) | Tasbas, Byan Zherek | .. | This study | Tasbas_LBA_LowCov | Kazakhstan | Forest / Steppe | 45.13427 | 79.36794 | 14d, ctx 20, level 2, ZA-0238 | I3453 | bone | separate nuclear and mtDNA target enrichment | no 14C date | LBA | No | M | 8696 | 0.007446 | n/a (<200 SNPs) | n/a (<200 SNPs) | S3453.E1.L2 | half | 0.024 | n/a (mtDNA coverage <2x) | QUESTIONABLE_CRITICAL (sex.intermediate=0.041,damage=0.024) | automatic | Michael Frachetti | ||
199 | I4785 | Myrzhyk_MLBA_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324758/I4785.bam | A | 3000 | 1600-500 BCE | Myrzhyk | .. | This study | Myrzhyk_MLBA_LowCov | Kazakhstan | Forest / Steppe | .. | .. | KZ-MRK-001, Myrzhik 6, kurgan 3 | I4785 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | MLBA | No | M | 3737 | 0.003103 | n/a (<200 SNPs) | n/a (<200 SNPs) | S4785.E1.L1 | half | 0.027 | n/a (mtDNA coverage <2x) | QUESTIONABLE_CRITICAL (2500.to.5000.SNPs, damage=0.027) | automatic | Michael Frachetti | ||
201 | I6118 | BMAC_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324630/I6118.bam | A | 4000 | 2500-1600 BCE | Gonur | J1b1a3 | This study | Gonur1_BA_LowCov | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonur 2003 tomb 3050 sample 6 | I6118 | tooth | separate nuclear and mtDNA target enrichment | no 14C date | BA | No | M | 4053 | 0.003357 | n/a (<200 SNPs) | n/a (<200 SNPs) | S6118.E1.L1 | half | 0.042 | 0.998 | QUESTIONABLE (2500.to.5000.SNPs) | automatic | James Mallory, Nadezhda Dubova | ||
202 | I6122 | BMAC_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324627/I6122.bam | A | 4000 | 2500-1600 BCE | Gonur | N1a2 | This study | Gonur1_BA_LowCov | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonur 2000 tomb 1646 sample 39 | I6122 | tooth | separate nuclear and mtDNA target enrichment | no 14C date | BA | No | M | 8667 | 0.007242 | n/a (<200 SNPs) | n/a (<200 SNPs) | S6122.E1.L1 | half | 0.068 | 1 | PASS | automatic | James Mallory, Nadezhda Dubova | ||
204 | I2954 | Swat_H_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324943/I2954.bam | A | 2332 | 403-360 calBCE (2296±19 BP, CIRCE-DSH-5624) | Swat Valley, Saidu Sharif | H2 | This study | Saidu_Sharif_H_LowCov | Pakistan | South Asia | 34.75700556 | 72.36238056 | Grave 5, Individual 1 in a double burial , SSI G5 6 | I2954 | .. | separate nuclear and mtDNA target enrichment | no 14C date | H | No | M | 5697 | 0.005 | n/a (<200 SNPs) | n/a (<200 SNPs) | S2954.E1.L1 | half | 0.034 | 0.74 | QUESTIONABLE_CRITICAL (sex.intermediate=0.122,mtcontam=0.740) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | ||
206 | I4319 | Steppe_LBA_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324898/I4319.bam | BT | 3638 | 1746-1630 calBCE (3395±25 BP, PSUAMS-2543) | Kairan | .. | This study | Kairan_MLBA_o_LowCov | Kazakhstan | Forest / Steppe | 48.74175 | 76.99573333 | KZ-KAR-010, Kairan I, Enclosure 10 | I4319 | petrous | separate nuclear and mtDNA target enrichment | 1746-1630 calBCE (3395±25 BP, PSUAMS-2543) | MLBA | No | M | 7159 | 0.006 | n/a (<200 SNPs) | n/a (<200 SNPs) | S4319.E1.L1 | half | 0.101 | n/a (mtDNA coverage <2x) | PASS | automatic | Michael Frachetti | ||
210 | I5762 | Western_Steppe_MLBA_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3325065/I5762.bam | BT | 3500 | 1600-1500 BCE | Kairan | .. | This study | Kairan_MLBA_LowCov | Kazakhstan | Forest / Steppe | 48.74175 | 76.99573333 | KZ-KAR-014, Kairan I, Enclosure 6, Grave 1 | I5762 | tooth | separate nuclear and mtDNA target enrichment | no 14C date | MLBA | No | M | 6302 | 0.005266 | n/a (<200 SNPs) | n/a (<200 SNPs) | S5762.E1.L1 | half | 0.052 | n/a (mtDNA coverage <2x) | PASS | automatic | Michael Frachetti | ||
213 | I11461 | Shahr_I_Sokhta_BA1_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324783/I11461.bam | BT | 4600 | 3200-2100 BCE | Seistan, Shahr-i Sokhta | L3f2b | This study | Shahr_I_Sokhta_BA1_LowCov | Iran | Iran / Turan | 30.649857 | 61.400311 | 405, IRV Grave 45 | I11461 | petrous | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | no 14C date | BA | No | M | 2854 | 0.002391 | n/a (<200 SNPs) | n/a (<200 SNPs) | S11461.Y1.E1.L1 | half | 0.049 | .. | QUESTIONABLE (2500.to.5000.SNPS) | automatic | Massimo Vidale, Alfredo Coppa | ||
215 | I7101 | BMAC_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324634/I7101.bam | BT | 4050 | 2500-1700 BCE | Gonur | U1a1c1 | This study | Gonur1_BA_LowCov | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonut tomb 1466 sample 25 | I7101 | tooth | separate nuclear and mtDNA target enrichment | no 14C date | BA | No | M | 9474 | 0.007985 | n/a (<200 SNPs) | n/a (<200 SNPs) | S7101.E1.L1 | half | 0.083 | 1 | PASS | automatic | James Mallory, Nadezhda Dubova | ||
219 | I6120 | BMAC_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324631/I6120.bam | BT | 4000 | 2500-1600 BCE | Gonur | R2 | This study | Gonur1_BA_LowCov | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonur tomb 1307 sample 62 | I6120 | tooth | separate nuclear and mtDNA target enrichment | no 14C date | BA | No | M | 3106 | 0.002592 | n/a (<200 SNPs) | n/a (<200 SNPs) | S6120.E1.L1 | half | 0.049 | 1 | QUESTIONABLE (2500.to.5000.SNPs) | automatic | James Mallory, Nadezhda Dubova | ||
220 | I11562 | Swat_Medieval_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3325072/I11562.bam | BT | 1450 | 1-1000 CE | Swat Valley, Parwak | .. | This study | Parwak_Medieval_LowCov | Pakistan | South Asia | 36.280247 | 72.414702 | Grave 31, Skeleton 2 in a multiple burial , PARWAK28 | I11562 | bone (long bone) | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | H | No | M | 1794 | 0.001503 | n/a (<200 SNPs) | n/a (<200 SNPs) | S11562.E1.L1 | half | 0.051 | n/a (mtDNA coverage <2x) | QUESTIONABLE_CRITICAL (<2500.SNPs) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | ||
222 | I6553 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324858/I6553.bam | C1b1a1a1 | K281>K98>P92>Z5895 (xK96) | 2853 | 971-834 calBCE (2755±20 BP, PSUAMS-2795) | Swat Valley, Loebanr | U2e1'2'3 | This study | Loebanr_IA | Pakistan | South Asia | 34.75146111 | 72.40193611 | Grave 135, Individual 1 (?) in a double burial , LOEB_53 | I6553 | petrous | separate nuclear and mtDNA target enrichment | 971-834 calBCE (2755±20 BP, PSUAMS-2795) | LBA / IA | Yes | M | 446528 | 0.603595 | 0.001432 | 0.549968181 | S6553.E1.L1 | half | 0.102 | 0.999 | PASS | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
225 | I6708 | Kanai_MBA | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324751/I6708.bam | C2b | M217>L1373>F1699 | 4062 | 2193-2031 calBCE (3705±20 BP, PSUAMS-2916) | Northwestern Kazakhstan, Kanai Cemetery | T | This study | Kanai_MBA | Kazakhstan | Forest / Steppe | 48.832683 | 83.909744 | StPet37, collection 6095, individual 9 | I6708 | petrous | separate nuclear and mtDNA target enrichment | 2193-2031 calBCE (3705±20 BP, PSUAMS-2916) | EMBA | Yes | M | 136470 | 0.126689 | n/a (<200 SNPs) | n/a (<200 SNPs) | S6708.E1.L1 | half | 0.1 | 0.999 | PASS | automatic | Vyacheslav Moiseyev | |
228 | I3456 | Tasbas_LBA | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324955/I3456.bam | CT | F | 2997 | 1117-976 calBCE (2870±20 BP, PSUAMS-2538) | Tasbas, Byan Zherek | H2a2 | This study | Tasbas_LBA | Kazakhstan | Forest / Steppe | 45.13427 | 79.36794 | TB ctx 129. Bag ZA-0255 | I3456 | bone | separate nuclear and mtDNA target enrichment | 1117-976 calBCE (2870±20 BP, PSUAMS-2538) | LBA | Yes | M | 21625 | 0.020526 | n/a (<200 SNPs) | n/a (<200 SNPs) | S3456.E1.L1,S3456.E1.L2 | half,half | 0.02,0.025 | 0.976,0.991 | QUESTIONABLE_CRITICAL (sex.intermediate=0.050-0.103,damage=0.020-0.025) | manual | Michael Frachetti | |
231 | I11042 | BMAC | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324603/I11042.bam | CT | 4225 | 2300-2250 BCE | Gonur | HV18 | This study | Gonur1_BA | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonur tomb 3220, skeleton 3, UfaNov17-005 | I11042 | tooth | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | no 14C date | BA | Yes | M | 19125 | 0.016221 | n/a (<200 SNPs) | n/a (<200 SNPs) | S11042.E1.L1 | half | 0.139 | 0.994 | PASS | automatic | James Mallory, Nadezhda Dubova | ||
234 | I6312 | BMAC_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324628/I6312.bam | CT | 4000 | 2500-1600 BCE | Gonur | R2 | This study | Gonur1_BA_LowCov | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonur tomb 1415 sample 46 | I6312 | tooth | separate nuclear and mtDNA target enrichment | no 14C date | BA | No | M | 7736 | 0.006419 | n/a (<200 SNPs) | n/a (<200 SNPs) | S6312.E1.L1 | half | 0.104 | 0.999 | PASS | automatic | James Mallory, Nadezhda Dubova | ||
241 | I6119 | BMAC | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324599/I6119.bam | CT | L56 | 3989 | 2130-1948 calBCE (3650±20 BP, PSUAMS-2840) | Gonur | J1 | This study | Gonur1_BA | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonur 2005 tomb 3466 sample 2 | I6119 | tooth | separate nuclear and mtDNA target enrichment | 2130-1948 calBCE (3650±20 BP, PSUAMS-2840) | BA | Yes | M | 51113 | 0.043698 | n/a (<200 SNPs) | n/a (<200 SNPs) | S6119.E1.L1 | half | 0.068 | 0.996 | PASS | automatic | James Mallory, Nadezhda Dubova | |
250 | I7170 | BMAC_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324635/I7170.bam | CT | 3850 | 2000-1800 BCE | Gonur | HV12b1 | This study | Gonur1_BA_LowCov | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonur 2006 Area 10 pit tomb 3300(2 = individual 2), N23m | I7170 | tooth | separate nuclear and mtDNA target enrichment | no 14C date | BA | No | M | 7636 | 0.006362 | n/a (<200 SNPs) | n/a (<200 SNPs) | S7170.E1.L1 | half | 0.064 | 1 | PASS | automatic | James Mallory, Nadezhda Dubova | ||
258 | I4158 | BMAC_o_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324637/I4158.bam | CT | 3400 | 1600-1300 BCE | Bustan | H2 | This study | Bustan_BA_o_LowCov | Uzbekistan | Iran / Turan | 37.66666667 | 67 | UZ-BST-006, Site 5, Grave 4, 57-28 | I4158 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | BA | No | M | 10710 | 0.008995 | n/a (<200 SNPs) | n/a (<200 SNPs) | S4158.E1.L1 | half | 0.055 | 0.782 | QUESTIONABLE_CRITICAL (mtcontam=0.782) | automatic | Michael Frachetti | ||
259 | I2328 | Hajji_Firuz_C | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324735/I2328.bam | CT | 7906 | 6013-5898 calBCE (7075±30 BP, PSUAMS-2345) | Hajji Firuz | K1b1a | This study | Hajji_Firuz_C | Iran | Iran / Turan | 36.9944 | 45.4744 | FH9, F10 B1 skull 7 | I2328 | tooth (molar) | separate nuclear and mtDNA target enrichment | 6013-5898 calBCE (7075±30 BP, PSUAMS-2345) | C / EN | Yes | M | 16500 | 0.013842 | n/a (<200 SNPs) | n/a (<200 SNPs) | S2328.E1.L2,S2328.E1.L3,S2328.E1.L4,S2328.E1.L5 | half,half,half,half | ..,..,..,.. | 1,0.999,1,1 | PASS | automatic | Janet Monge | ||
324 | I8527 | Geoksyur_EN | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324716/I8527.bam | CT | P1 | 5100 | 3500-2800 BCE | Geoksyur | .. | This study | Geoksyur_EN | Turkmenistan | Iran / Turan | 37.1907 | 61.0343 | MOS324, Geoksyur 1, 1964, 172, вяпе (Vyape), IE-10-23 | I8527 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | C / EN | Yes | M | 33138 | 0.028172 | n/a (<200 SNPs) | n/a (<200 SNPs) | S8527.E1.L1 | half | 0.083 | n/a (mtDNA coverage <2x) | PASS | manual | Sergey Vasilyev | |
326 | I12140 | SPGT_1d.rel.I10523_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324872/I12140.bam | CT | 2850 | 1000-800 BCE | Swat Valley, Katelai | .. | This study | Katelai_IA_1d.rel.I10523_LowCov | Pakistan | South Asia | 34.76584167 | 72.34913333 | Grave unrecorded, 559 | I12140 | petrous | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | no 14C date | LBA / IA | No | M | 12681 | 0.009737 | n/a (<200 SNPs) | n/a (<200 SNPs) | S12140.Y1.E1.L1 | half | 0.303 | n/a (mtDNA coverage <2x) | PASS | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | ||
328 | I3261 | SPGT_1d.rel.of.I1985 | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324874/I3261.bam | DE | 2950 | 1200-800 BCE | Swat Valley, Udegram | .. | This study | Udegram_IA_1d.rel.of.I1985 | Pakistan | South Asia | 34.74876389 | 72.30835833 | Grave 27, Individual 1 in a double burial , DA-UDE0317-020 | I3261 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | LBA / IA | No | M | 25473 | 0.021606 | n/a (<200 SNPs) | n/a (<200 SNPs) | S3261.E1.L1,S6898.E1.L1 | half,half | 0.048,0.076 | ..,.. | PASS | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Ayushi Nayak, Nicole Boivin | ||
331 | I1992 | SPGT_o | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324883/I1992.bam | E1a | E | 3037 | 1195-978 calBCE (2890±30 BP, Beta-428665) | Swat Valley, Udegram | H2a2 | This study | Udegram_IA_o | Pakistan | South Asia | 34.74876389 | 72.30835833 | Grave 29, Individual 1 in a double burial , UDG12 | I1992 | tooth | separate nuclear and mtDNA target enrichment | 1195-978 calBCE (2890±30 BP, Beta-428665) | LBA / IA | Yes | M | 45938 | 0.039648 | n/a (<200 SNPs) | n/a (<200 SNPs) | S1992.E1.L1,S1992.E1.L2,S1992.E1.L3 | half,half,half | ..,0.119,0.119 | 0.926,0.913,0.969 | QUESTIONABLE (mtcontam=0.913-0.969) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli | |
332 | I10551 | Farkhor_BA_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324907/I10551.bam | E1b1b | M215 | 4450 | 3000-2000 BCE | Farkhor | .. | This study | Farkhor_BA_LowCov | Tajikistan | Iran / Turan | 37.48333 | 69.40119 | UfaNov17-024, Farkhor 2017 Area 6A, tomb 43 | I10551 | petrous | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | no 14C date | MLBA | No | M | 12221 | 0.010293 | n/a (<200 SNPs) | n/a (<200 SNPs) | S10551.E1.L1 | half | 0.013 | n/a (mtDNA coverage <2x) | QUESTIONABLE (damage=0.013) | automatic | James Mallory, Nadezhda Dubova | |
333 | I2085 | BMAC | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324596/I2085.bam | E1b1b1 | M123>M34 | 3899 | 2011-1886 calBCE (3580±20 BP, PSUAMS-2313) | Gonur | .. | This study | Gonur1_BA | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonur 2004 Area 8 cist 3201 N28m | I2085 | bone | separate nuclear and mtDNA target enrichment | 2011-1886 calBCE (3580±20 BP, PSUAMS-2313) | BA | Yes | M | 141334 | 0.130472 | n/a (<200 SNPs) | n/a (<200 SNPs) | S2085.E1.L1,S2085.E1.L2,S2085.E1.L3 | half,half,half | 0.089,0.086,0.079 | 0.999,0.978,0.981 | PASS | manual | James Mallory, Nadezhda Dubova | |
334 | I6900 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324871/I6900.bam | E1b1b1b2 | M123>pre-Y31991 | 3213 | 1400-1126 calBCE (3018±45 BP, CEDAD-LTL13327A) | Swat Valley, Udegram | .. | This study | Udegram_IA | Pakistan | South Asia | 34.74876389 | 72.30835833 | Grave 3, Individual 1 in a single burial , DA-UDE0317-026 | I6900 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | LBA / IA | Yes | M | 764737 | 2.11586 | 0.005762 | 3.354720013 | S6900.E1.L1 | half | 0.15 | 0.964 | PASS (Xcontam=0.006) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Ayushi Nayak, Nicole Boivin | |
335 | I1799 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324866/I1799.bam | E1b1b1b2 | M123>pre-Y31991 | 3157 | 1491-922 calBCE [1044-922 calBCE (2830±20 BP, PSUAMS-2632), 1491-1231 calBCE (3098±45 BP, CEDAD-LTL13335A)] | Swat Valley, Udegram | T2a1b | This study | Udegram_IA | Pakistan | South Asia | 34.74876389 | 72.30835833 | Grave 5, Individual 1 in a double burial , UDG53, DA-UDE0317-053 | I1799 | bone | separate nuclear and mtDNA target enrichment | 1044-922 calBCE (2830±20 BP, PSUAMS-2632) | LBA / IA | Yes | M | 817478 | 3.638625 | 0.005791 | 5.055182763 | S8191.E1.L1,S1799.E1.L2 | half,half | 0.151,.. | 0.998,0.99 | PASS (Xcontam=0.006) | manual | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Ayushi Nayak, Nicole Boivin | |
336 | I6194 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324868/I6194.bam | E1b1b1b2 | M123>pre-Y31991 | 2950 | 1200-800 BCE | Swat Valley, Udegram | U8b1a | This study | Udegram_IA | Pakistan | South Asia | 34.74876389 | 72.30835833 | Grave 5, Individual 2 in a double burial , UDG45, DA-UDE0317-055 | I6194 | tooth | separate nuclear and mtDNA target enrichment | no 14C date | LBA / IA | Yes | M | 776502 | 2.163694 | 0.008474 | 4.952262735 | S8195.E1.L1,S6194.E1.L1 | half,half | 0.15,0.068 | 0.999,1 | PASS (Xcontam=0.008) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
337 | I6197 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324869/I6197.bam | E1b1b1b2 | M123>pre-Y31991 | 2950 | 1200-800 BCE | Swat Valley, Udegram | M65a | This study | Udegram_IA | Pakistan | South Asia | 34.74876389 | 72.30835833 | Grave 4, Individual 2, UDG58, DA-UDE0317-48, Luca58 | I6197 | tooth | separate nuclear and mtDNA target enrichment | no 14C date | LBA / IA | Yes | M | 836021 | 2.939387 | 0.005198 | 4.051625093 | S7725.E1.L1,S6197.E1.L1 | half,half | 0.156,0.003 | 0.994,.. | PASS (damage=0.003-0.156, neutralized by Xcontam=0.005) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
340 | I6899 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324867/I6899.bam | E1b1b1b2 | M123>pre-Y31991 | 2868 | 1044-792 calBCE [1044-830 calBCE (2785±45 BP, CEDAD-LTL13328A), 901-792 calBCE (2659±40 BP, CEDAD-LTL13328A)] | Swat Valley, Udegram | .. | This study | Udegram_IA | Pakistan | South Asia | 34.74876389 | 72.30835833 | Grave 1, Individual 1 or 2 in a double burial , DA-UDE0317-024 | I6899 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | LBA / IA | Yes | M | 838191 | 2.884011 | 0.005387 | 4.258639417 | S6899.E1.L1 | half | 0.132 | 0.981 | PASS (Xcontam=0.005) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Ayushi Nayak, Nicole Boivin | |
341 | I12472 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3325071/I12472.bam | E1b1b1b2 | Z830 | 2850 | 1000-800 BCE | Swat Valley, Katelai | M65a+@16311 | This study | Katelai_IA | Pakistan | South Asia | 34.76584167 | 72.34913333 | Grave 204, single burial , 610 | I12472 | petrous | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | LBA / IA | Yes | M | 136826 | 0.129843 | n/a (<200 SNPs) | n/a (<200 SNPs) | S12472.Y1.E1.L1 | half | 0.228 | 0.998 | PASS | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
357 | I1985 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324870/I1985.bam | E1b1b1b2a | M123>pre-Y31991 | 2958 | 1192-824 calBCE [1192-939 calBCE (2880±30 BP, Beta-428667), 1001-824 calBCE (2758±40 BP, CEDAD-LTL13334A)] | Swat Valley, Udegram | M | This study | Udegram_IA | Pakistan | South Asia | 34.74876389 | 72.30835833 | Grave 10, Individual 1, UDG34+UDG39, DA-UDE0317-040 | I1985 | bone | separate nuclear and mtDNA target enrichment | 1192-939 calBCE (2880±30 BP, Beta-428667) | LBA / IA | Yes | M | 897462 | 4.204466 | 0.004396 | 4.585653934 | S1985.E1.L1,S1995.E1.L1,S1985.E1.L2 | half,half,half,half,half | 0.128,0.15,0.115 | 0.981,0.986,0.977 | PASS (Xcontam=0.004) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli | |
359 | I3262 | SPGT_father.or.son.I1799_1d.rel.I1992 | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324877/I3262.bam | E1b1b1b2a | M123>pre-Y31991 | 2854 | 976-832 calBCE (2760±25 BP, PSUAMS-2157) | Swat Valley, Udegram | H14a | This study | Udegram_IA_father.or.son.I1799 | Pakistan | South Asia | 34.74876389 | 72.30835833 | Grave 26, Individual 1 in a double burial , UDG5, DA-UDE0317-017, Luca5 | I3262 | tooth + petrous | separate nuclear and mtDNA target enrichment | 976-832 calBCE (2760±25 BP, PSUAMS-2157) | LBA / IA | No | M | 826940 | 3.02248 | 0.007634 | 5.139318344 | S3262.E1.L1,S3262.E1.L2,S7566.E1.L1 | half,half,half | 0.104,0.121,0.153 | 0.999,0.998,0.995 | PASS (Xcontam=0.008) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
360 | I4156 | BMAC | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324574/I4156.bam | G | Z6552 | 3400 | 1600-1300 BCE | Bustan | H2a2a | This study | Bustan_BA | Uzbekistan | Iran / Turan | 37.66666667 | 67 | UZ-BST-004, Site 7, Grave 33 (1), 44-91 | I4156 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | BA | Yes | M | 24080 | 0.02 | n/a (<200 SNPs) | n/a (<200 SNPs) | S4156.E1.L1 | half | 0.128 | 0.992 | PASS | automatic | Michael Frachetti | |
362 | I6670 | Parkhai_Anau_EN_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324768/I6670.bam | G | G M377- M406- Z6553- CTS11562- | 4450 | 2700-2300 BCE | Parkhai II | .. | This study | Parkhai_EBA_LowCov | Turkmenistan | Iran / Turan | 38.348048 | 56.24543 | StPet26, site II, grave K-178, individual 4 | I6670 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | C / EN | No | M | 2673 | 0.002216 | n/a (<200 SNPs) | n/a (<200 SNPs) | S6670.E1.L1 | half | 0.048 | n/a (mtDNA coverage <2x) | QUESTIONABLE (2500.to.5000.SNPs) | automatic | Vyacheslav Moiseyev, Andrey Gromov | |
366 | I7420 | BMAC | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324613/I7420.bam | G2a2a | PF3147>Z36520 | 3750 | 2000-1600 BCE | Sappali Tepe | W3a1 | This study | Sappali_Tepe_BA | Uzbekistan | Iran / Turan | 37.41666667 | 66.83333333 | UZ-ST-012, Sappali Tepe (ST), Grave 00-61 | I7420 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | BA | Yes | M | 899293 | 2.189652 | 0.003986 | 2.892606365 | S7420.E1.L1 | half | 0.097 | 0.996 | PASS (Xcontam=0.004) | automatic | Michael Frachetti | |
367 | I8246 | Aligrama2_IA | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324562/I8246.bam | G2a2a1 | PF3147>PF3148>PF3177>FGC6669>FGC6663>Y14935>FGC58131 | 2710 | 970-550 BCE | Swat Valley, Aligrama | U2c1a | This study | Aligrama2_IA | Pakistan | South Asia | 34.80489444 | 72.31816944 | Grave 5, Individual 1 | I8246 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | LBA / IA | Yes | M | 661402 | 0.605312 | 0.011634 | 1.90225509 | S8246.E1.L1 | half | 0.09 | 0.999 | PASS | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
368 | I11565 | Swat_Medieval_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324950/I11565.bam | GHIJK | GHIJK xG xI xN xP1 | 1450 | 1-1000 CE | Swat Valley, Parwak | J1b1 | This study | Parwak_Medieval_LowCov | Pakistan | South Asia | 36.280247 | 72.414702 | Grave 31 (?), unassigned skeleton probably in a multiple burial , PARWAK32 | I11565 | bone (long bone) | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | H | No | M | 10550 | 0.008873 | n/a (<200 SNPs) | n/a (<200 SNPs) | S11565.E1.L1 | half | 0.082 | 0.937 | QUESTIONABLE (mtcontam=0.937) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
371 | I6548 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324791/I6548.bam | H1a1 | M2826>M69>M52>M82 | 2850 | 1000-800 BCE | Swat Valley, Barikot | H | This study | Barikot_IA | Pakistan | South Asia | 34.67760278 | 72.21248056 | Grave 2, Individual 2 in a triple burial, BKOT4 | I6548 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | LBA / IA | Yes | M | 188029 | 0.179339 | n/a (<200 SNPs) | n/a (<200 SNPs) | S6548.E1.L1 | half | 0.129 | 0.965 | PASS | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
372 | I8194 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324797/I8194.bam | H1a1a | M2826>M69>M52>M82>Z5870* | 2950 | 1100-900 BCE | Swat Valley, Gogdara | R30a1b | This study | Gogdara_IA | Pakistan | South Asia | 34.74876389 | 72.30835833 | G IV Grave C, Individual 1, DA-UDE0317-072 | I8194 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | LBA / IA | Yes | M | 831565 | 3.867075 | 0.007912 | 6.193550003 | S8194.E1.L1 | half | 0.162 | 0.991 | PASS (Xcontam=0.008) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli | |
379 | I12447 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324821/I12447.bam | H1a1d2 | M2826>M69>M52>M82>M2914>Z4361 | 2850 | 1000-800 BCE | Swat Valley, Katelai | R30b1 | This study | Katelai_IA | Pakistan | South Asia | 34.76584167 | 72.34913333 | Grave 79, single burial , 584 | I12447 | petrous | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | LBA / IA | Yes | M | 460430 | 0.631899 | 0.007587 | 1.770133666 | S12447.Y1.E1.L1 | half | 0.15 | 0.995 | PASS | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
381 | I12143 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324822/I12143.bam | H1a1d2 | M2826>M69>M52>M82>M2914>Z4361 | 2850 | 1000-800 BCE | Swat Valley, Katelai | H13a2a | This study | Katelai_IA | Pakistan | South Asia | 34.76584167 | 72.34913333 | Grave 237, Individual 2 (B) in a double burial , 562 | I12143 | petrous | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | no 14C date | LBA / IA | Yes | M | 469049 | 0.621564 | 0.006713 | 1.587252422 | S12143.Y1.E1.L1 | half | 0.202 | 0.999 | PASS | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
384 | I6677 | Bilina_N_Baalberge | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324568/I6677.bam | H2 | P96>pre-Y21618 | 5550 | 3800-3400 BCE | Bílina, Titzler's sandpit | T2b | This study | Bilina_N_Baalberge | Czech Republic | Europe | 50.5528285 | 13.7868857 | BILI_4, National Museum No. P7A 7558 | I6677 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | MLBA | Yes | M | 873182 | 3.488173 | 0.004923 | 4.49419534 | S6677.E1.L1 | half | 0.098 | 0.99 | PASS (Xcontam=0.005) | automatic | Petr Veleminsky, Miroslav Dobeš | |
385 | I2335 | Tepe_Hissar_C_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324969/I2335.bam | H3 | M2826>Z5857 (Z13614+; C>T) | 5462 | 3639-3385 calBCE (4760±25 BP, PSUAMS-2346) | Tepe Hissar | U1a'c | This study | Tepe_Hissar_C_LowCov | Iran | Iran / Turan | 36.15444444 | 54.38361111 | TH16-4, 33-16-4, Period 1 | I2335 | bone (phalanx) | separate nuclear and mtDNA target enrichment | 3639-3385 calBCE (4760±25 BP, PSUAMS-2346) | C / EN | No | M | 8442 | 0.007056 | n/a (<200 SNPs) | n/a (<200 SNPs) | S2335.E1.L2,S2335.E1.L4 | half,half | ..,.. | 0.921,0.938 | QUESTIONABLE (mtcontam=0.921-0.938) | automatic | Janet Monge | |
388 | I6696 | Western_Steppe_MLBA | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324984/I6696.bam | I2a1 | P37>CTS595>S21825>Y4213>M838 | 4575 | 2900-2350 BCE | Velké Žernoseky | H2a1 | This study | Corded_Ware_Czech_EN | Czech Republic | Europe | 50.5320782 | 14.070678 | VEZE_27-III, Nicolaus Parthe’s quarry, Grave 27, National Museum No. P7A 6589 | I6696 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | MLBA | Yes | M | 850315 | 3.161274 | 0.006268 | 4.949916448 | S6696.E1.L1 | half | 0.077 | 0.991 | PASS (Xcontam=0.006) | manual | Petr Veleminsky, Miroslav Dobeš | |
390 | I12471 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324812/I12471.bam | I2a2a1b1b1 | M223>L701>L699>pre-L704 | 2850 | 1000-800 BCE | Swat Valley, Katelai | HV17 | This study | Katelai_IA | Pakistan | South Asia | 34.76584167 | 72.34913333 | Grave 61, single burial , 609 | I12471 | petrous | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | LBA / IA | Yes | M | 501631 | 0.739137 | 0.002312 | 1.041340122 | S12471.Y1.E1.L1 | half | 0.17 | 0.998 | PASS | manual | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
393 | I12149 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324813/I12149.bam | I2a2a1b1b1 | M223>L701>L699>pre-L704 | 2850 | 1000-800 BCE | Swat Valley, Katelai | M30c1 | This study | Katelai_IA | Pakistan | South Asia | 34.76584167 | 72.34913333 | Grave 122, single burial , 568 | I12149 | petrous | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | no 14C date | LBA / IA | Yes | M | 620955 | 1.463987 | 0.008124 | 3.808313035 | S12149.Y1.E1.L1 | half | 0.224 | 0.995 | PASS (Xcontam=0.008) | manual | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
394 | I1792 | Gonur1_BA_o | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324729/I1792.bam | J | L26>L24>Y22662 | 4280 | 2458-2202 calBCE (3840±35 BP, Poz-83487) | Gonur | .. | This study | Gonur1_BA_o | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonur 2004 large pit royal cemetery 3240 (9) | I1792 | tooth | separate nuclear and mtDNA target enrichment | 2458-2202 calBCE (3840±35 BP, Poz-83487) | BA | Yes | M | 46468 | 0.039834 | n/a (<200 SNPs) | n/a (<200 SNPs) | S1792.E1.L1,S1792.E1.L2,S1792.E1.L3 | half,half,half | 0.072,0.084,0.068 | 0.998,0.994,0.997 | PASS | automatic | James Mallory, Nadezhda Dubova | |
395 | I2128 | BMAC | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324601/I2128.bam | J | L25>F3133 | 4067 | 2198-2036 calBCE (3720±20 BP, PSUAMS-2316) | Gonur | .. | This study | Gonur1_BA | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonur tomb 1311 sample 59 | I2128 | tooth | separate nuclear and mtDNA target enrichment | 2198-2036 calBCE (3720±20 BP, PSUAMS-2316) | BA | Yes | M | 35446 | 0.030159 | n/a (<200 SNPs) | n/a (<200 SNPs) | S2128.E1.L1,S2128.E1.L2,S2128.E1.L3 | half,half,half | ..,0.04,0.044 | 0.937,0.963,0.953 | QUESTIONABLE (mtcontam=0.937-0.963) | automatic | James Mallory, Nadezhda Dubova | |
396 | I6127 | BMAC_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324629/I6127.bam | J | J (M410-) | 4000 | 2500-1600 BCE | Gonur | .. | This study | Gonur1_BA_LowCov | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonur tomb 1128 sample 22 | I6127 | tooth | separate nuclear and mtDNA target enrichment | no 14C date | BA | No | M | 3500 | 0.002926 | n/a (<200 SNPs) | n/a (<200 SNPs) | S6127.E1.L1 | half | 0.028 | 0.919 | QUESTIONABLE (2500.to.5000.SNPs, mtcontam=0.919) | automatic | James Mallory, Nadezhda Dubova | |
397 | I4899 | BMAC | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324577/I4899.bam | J | M410 | 3400 | 1600-1300 BCE | Bustan | HV | This study | Bustan_BA | Uzbekistan | Iran / Turan | 37.66666667 | 67 | UZ-BST-014, Site 5, Grave 11 | I4899 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | BA | Yes | M | 77841 | 0.069 | n/a (<200 SNPs) | n/a (<200 SNPs) | S4899.E1.L1 | half | 0.099 | 0.944 | QUESTIONABLE (mtcontam=0.944) | automatic | Michael Frachetti | |
398 | I8524 | Geoksyur_EN | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324723/I8524.bam | J | L620>PF4816>ZS6599>ZS4428>ZS6592 | 5100 | 3500-2800 BCE | Geoksyur | U7a | This study | Geoksyur_EN | Turkmenistan | Iran / Turan | 37.1907 | 61.0343 | MOS319, Geoksyur 1, 1963, Skull N124, IE-10-14 | I8524 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | C / EN | Yes | M | 218844 | 0.215971 | n/a (<200 SNPs) | n/a (<200 SNPs) | S8524.E1.L1 | half | 0.122 | 0.953 | PASS | automatic | Sergey Vasilyev | |
399 | I12482 | Geoksyur_EN | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324720/I12482.bam | J | PF5008>L581>Z37823>PF5000>PF4993 (xPH1795) | 5100 | 3500-2800 BCE | Geoksyur | I1c1 | This study | Geoksyur_EN | Turkmenistan | Iran / Turan | 37.1907 | 61.0343 | MOS297, IE-10-48 | I12482 | petrous | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | C / EN | Yes | M | 235342 | 0.261743 | n/a (<200 SNPs) | n/a (<200 SNPs) | S12482.Y1.E1.L1 | half | 0.169 | 0.977 | PASS | automatic | Sergey Vasilyev | |
407 | I12487 | Geoksyur_EN | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324717/I12487.bam | J | L620>PF4816>ZS6599>ZS4428 | 5100 | 3500-2800 BCE | Geoksyur | T2g1b | This study | Geoksyur_EN | Turkmenistan | Iran / Turan | 37.1907 | 61.0343 | MOS329, IE-10-9 | I12487 | petrous | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | C / EN | Yes | M | 436355 | 0.539743 | 0.009105 | 1.694978043 | S12487.Y1.E1.L1 | half | 0.211 | 1 | PASS | manual | Sergey Vasilyev | |
408 | I2927 | Tepe_Hissar_C | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324965/I2927.bam | J | L25>F3133 | 4413 | 2575-2350 calBCE (3970±30 BP, PSUAMS-1916) | Tepe Hissar | .. | This study | Tepe_Hissar_C | Iran | Iran / Turan | 36.15444444 | 54.38361111 | TH23-124, 33-23-124, Period 3 | I2927 | petrous | separate nuclear and mtDNA target enrichment | 2575-2350 calBCE (3970±30 BP, PSUAMS-1916) | C / EN | Yes | M | 404589 | 0.547576 | 0.001342 | 0.4068746659 | S2927.E1.L1,S2927.E1.L2,S2927.E1.L3 | half,half,half | 0.122,0.116,0.118 | 0.996,0.995,0.999 | PASS | automatic | Janet Monge | |
411 | I1808 | Swat_Medieval | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324945/I1808.bam | J | M102 | 1143 | 720-895 calCE (1200±30 BP, Beta-428663) | Swat Valley, Parwak | J1b1 | This study | Parwak_Medieval | Pakistan | South Asia | 36.280247 | 72.414702 | Grave 52, single burial , PARWAK30 | I1808 | .. | separate nuclear and mtDNA target enrichment | 720-895 calCE (1200±30 BP, Beta-428663) | H | Yes | M | 87450 | 0.077326 | n/a (<200 SNPs) | n/a (<200 SNPs) | S1808.E1.L1,S1808.E1.L2,S1808.E1.L3 | half,half,half | 0.044,0.065,0.057 | 0.935,0.969,0.967 | PASS (mtcontam=0.935-0.969) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
412 | I12465 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324818/I12465.bam | J | L25>F3133>Z7706 | 2850 | 1000-800 BCE | Swat Valley, Katelai | U7b | This study | Katelai_IA | Pakistan | South Asia | 34.76584167 | 72.34913333 | Grave 186, single burial , 603 | I12465 | petrous | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | LBA / IA | Yes | M | 200090 | 0.196641 | n/a (<200 SNPs) | n/a (<200 SNPs) | S12465.Y1.E1.L1 | half | 0.1575 | 0.984 | PASS | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
413 | I12453 | SPGT_LowCov | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324878/I12453.bam | J | L26 | 2850 | 1000-800 BCE | Swat Valley, Katelai | .. | This study | Katelai_IA_LowCov | Pakistan | South Asia | 34.76584167 | 72.34913333 | Grave 101, Individual 1 (C) in a triple burial , 590 | I12453 | petrous | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | LBA / IA | No | M | 11308 | 0.009431 | n/a (<200 SNPs) | n/a (<200 SNPs) | S12453.Y1.E1.L1 | half | 0.176 | n/a (mtDNA coverage <2x) | PASS | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
414 | I1784 | BMAC | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324600/I1784.bam | J1 | L620>PF4816>ZS6599>ZS4428>ZS6592 | 4066 | 2201-2031 calBCE (3720±30 BP, Poz-83485) | Gonur | U7a2 | This study | Gonur1_BA | Turkmenistan | Iran / Turan | 38.1907 | 62.0343 | Gonur tomb 2380 sample 17 | I1784 | bone | separate nuclear and mtDNA target enrichment | 2201-2031 calBCE (3720±30 BP, Poz-83485) | BA | Yes | M | 662584 | 1.794 | 0.006344 | 3.992646582 | S1784.E1.L1 | half | 0.119 | 0.987 | PASS (Xcontam=0.006) | automatic | James Mallory, Nadezhda Dubova | |
415 | I12481 | Geoksyur_EN | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324719/I12481.bam | J1 | L620>PF4816>ZS6599>ZS4428>ZS6592 | 5100 | 3500-2800 BCE | Geoksyur | HV12b1 | This study | Geoksyur_EN | Turkmenistan | Iran / Turan | 37.1907 | 61.0343 | MOS312, IE-10-52 | I12481 | petrous | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | C / EN | Yes | M | 489463 | 0.782561 | 0.00602 | 1.7622502 | S12481.Y1.E1.L1 | half | 0.229 | 0.989 | PASS | automatic | Sergey Vasilyev | |
417 | I8504 | Geoksyur_EN | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324718/I8504.bam | J1 | L620>PF4816>ZS6599>ZS4428>ZS6592 | 4959 | 3092-2925 calBCE (4400±25 BP, PSUAMS-3986) | Geoksyur | T2d2 | This study | Geoksyur_EN | Turkmenistan | Iran / Turan | 37.1907 | 61.0343 | MOS295, Geoksyur 1, 1963, N 139, Tolos "Ц" (ts), IE-10-35 | I8504 | petrous | separate nuclear and mtDNA target enrichment | 3092-2925 calBCE (4400±25 BP, PSUAMS-3986) | C / EN | Yes | M | 364312 | 0.393825 | 0.008093 | 0.9914610372 | S8504.E1.L1 | half | 0.115 | 0.996 | PASS | automatic | Sergey Vasilyev | |
418 | I6549 | Butkara_H | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324953/I6549.bam | J1 | Y6305 | 2057 | 167-46 calBCE (2080±20 BP, PSUAMS-2788) | Swat Valley, Butkara IV | M30 | This study | Butkara_H | Pakistan | South Asia | 34.76140556 | 72.37008056 | Grave 51, T.50b (to be corrected as T.51b) | I6549 | petrous | separate nuclear and mtDNA target enrichment | 167-46 calBCE (2080±20 BP, PSUAMS-2788) | H | Yes | M | 573555 | 0.918819 | 0.004192 | 1.6138688 | S6549.E1.L1 | half | 0.111 | 0.998 | PASS | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
419 | I6550 | Butkara_H | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324952/I6550.bam | J1 | Y6305>Y6304 | 1942 | 41 calBCE - 57 calCE (1990±20 BP, PSUAMS-2789) | Swat Valley, Butkara IV | U2a | This study | Butkara_H | Pakistan | South Asia | 34.76140556 | 72.37008056 | Grave 51, T.50a (corrected to T.51a) | I6550 | petrous | separate nuclear and mtDNA target enrichment | 41 calBCE - 57 calCE (1990±20 BP, PSUAMS-2789) | H | Yes | M | 714449 | 1.596593 | 0.002175 | 1.423266314 | S6550.E1.L1 | half | 0.098 | 0.993 | PASS | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
420 | I7715 | Swat_Medieval | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324944/I7715.bam | J1 | Y6305>Y6304 | 617 | 1276-1390 calCE (670±25 BP, PSUAMS-4427) | Swat Valley, Barikot | M49 | This study | Barikot_Medieval | Pakistan | South Asia | 34.75700556 | 72.36238056 | BKG308, Feature 139, DA-BIR0317-030 | I7715 | petrous | separate nuclear and mtDNA target enrichment | 1276-1390 calCE (670±25 BP, PSUAMS-4427) | H | Yes | M | 914627 | 4.449081 | 0.006171 | 5.790788414 | S7715.E1.L1 | half | 0.099 | 0.993 | PASS (Xcontam=0.006) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Ayushi Nayak, Nicole Boivin | |
422 | I12458 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324846/I12458.bam | J2 | M241>Z2432>Z2437>Y950 | 2850 | 1000-800 BCE | Swat Valley, Loebanr | M4 | This study | Loebanr_IA | Pakistan | South Asia | 34.75146111 | 72.40193611 | Grave 9, single burial , 595 | I12458 | petrous | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | LBA / IA | Yes | M | 672007 | 1.511464 | 0.004091 | 2.135413731 | S12458.Y1.E1.L1 | half | 0.1855 | 0.996 | PASS (sex.intermediate=0.328,Xcontam=0.004) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
423 | I11474 | Shahr_I_Sokhta_BA1 | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324778/I11474.bam | J2a | PF5008>L581>Z37823>PF5000>PF4993>P279>Y25795 | 4600 | 2700-2600 BCE | Seistan, Shahr-i Sokhta | R5a2b | This study | Shahr_I_Sokhta_BA1 | Iran | Iran / Turan | 30.649857 | 61.400311 | 418, Grave 303A, probably later Period II, phase 5B | I11474 | petrous | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | no 14C date | BA | Yes | M | 516701 | 0.890731 | 0.006839 | 1.98520458 | S11474.Y1.E1.L1 | half | 0.141 | .. | PASS | automatic | Massimo Vidale, Alfredo Coppa | |
428 | I7421 | BMAC | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324614/I7421.bam | J2a | PF5008* | 3799 | 1931-1767 calBCE (3525±25 BP, PSUAMS-3120) | Sappali Tepe | J1b1b1 | This study | Sappali_Tepe_BA | Uzbekistan | Iran / Turan | 37.41666667 | 66.83333333 | UZ-ST-002, Sappali Tepe (ST), Grave 00-91 | I7421 | petrous | separate nuclear and mtDNA target enrichment | 1931-1767 calBCE (3525±25 BP, PSUAMS-3120) | BA | Yes | M | 865688 | 1.850347 | 0.004238 | 2.898049253 | S7421.E1.L1 | half | 0.111 | 0.996 | PASS (Xcontam=0.004) | automatic | Michael Frachetti | |
431 | I4157 | BMAC | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324575/I4157.bam | J2a | M241>Z2432 | 3400 | 1600-1300 BCE | Bustan | T1 | This study | Bustan_BA | Uzbekistan | Iran / Turan | 37.66666667 | 67 | UZ-BST-005, Site 7, Grave 60, 56-63 | I4157 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | BA | Yes | M | 281113 | 0.293322 | n/a (<200 SNPs) | n/a (<200 SNPs) | S4157.E1.L1 | half | 0.108 | 0.98 | PASS | automatic | Michael Frachetti | |
433 | I8725 | Shahr_I_Sokhta_BA1 | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324781/I8725.bam | J2a1 | L26>PF5087>PF5160>PF5197>YSC0000253* (xY18934, SK1323, Z7429) | 4896 | 3010-2881 calBCE (4300±25 BP, PSUAMS-3989) | Seistan, Shahr-i Sokhta | J1 | This study | Shahr_I_Sokhta_BA1 | Iran | Iran / Turan | 30.649857 | 61.400311 | 48, IRL G-48, Late Period I or early Period II, phases 8/7 | I8725 | petrous | separate nuclear and mtDNA target enrichment | 3010-2881 calBCE (4300±25 BP, PSUAMS-3989) | BA | Yes | M | 646340 | 1.303552 | 0.002273 | 1.354701015 | S8725.E1.L1 | half | 0.154 | 0.998 | PASS | automatic | Massimo Vidale, Alfredo Coppa | |
437 | I8724 | Shahr_I_Sokhta_BA1 | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324780/I8724.bam | J2a1 | L26 | 4850 | 3000-2800 BCE [detected as a 2nd to 3rd degree relative of I8725 at 3010-2881 calBCE (4300±25 BP, PSUAMS-3989] | Seistan, Shahr-i Sokhta | I1 | This study | Shahr_I_Sokhta_BA1 | Iran | Iran / Turan | 30.649857 | 61.400311 | 38, T.38, Period II, phase 5A | I8724 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | BA | Yes | M | 173123 | 0.168067 | n/a (<200 SNPs) | n/a (<200 SNPs) | S8724.E1.L1 | half | 0.136 | 0.997 | PASS | automatic | Massimo Vidale, Alfredo Coppa | |
438 | I7494 | BMAC2 | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324646/I7494.bam | J2a1 | L25>F3133>Z7706>SK1382>L192 | 3897 | 2010-1883 calBCE (3575±20 BP, PSUAMS-3230) | Sappali Tepe | HV20 | This study | Sappali_Tepe2_BA | Uzbekistan | Iran / Turan | 37.41666667 | 66.83333333 | UZ-ST-006, Sappali Tepe (ST), 71, 8, zn2, Grave 00-149 | I7494 | petrous | separate nuclear and mtDNA target enrichment | 2010-1883 calBCE (3575±20 BP, PSUAMS-3230) | BA | Yes | M | 740205 | 1.303608 | 0.008519 | 3.174010595 | S7494.E1.L1 | half | 0.155 | 0.991 | PASS (Xcontam=0.009) | automatic | Michael Frachetti | |
445 | I11027 | BMAC | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324573/I11027.bam | J2a1 | M67>Z1847>Z7671>CTS900>Z7661* (xY3020) | 3542 | 1662-1521 calBCE (3315±25 BP, PSUAMS-6198) | Bustan | T2c | This study | Bustan_BA | Uzbekistan | Iran / Turan | 37.66666667 | 67 | UZ-BST-002, Site 7, Grave 33 (2), 44-92 | I11027 | petrous | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | 1662-1521 calBCE (3315±25 BP, PSUAMS-6198) | BA | Yes | M | 757100 | 2.414842 | 0.003561 | 3.10047147 | S11027.E1.L1 | half | 0.188 | 0.991 | PASS (Xcontam=0.004) | automatic | Michael Frachetti | |
447 | I4159 | BMAC | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324576/I4159.bam | J2a1 | L26>PF5087>PF5160>PF5197>PF5172>Z7314>PF5169>PF5174>PF5177>PF5252* | 3400 | 1600-1300 BCE | Bustan | R0 | This study | Bustan_BA | Uzbekistan | Iran / Turan | 37.66666667 | 67 | UZ-BST-007, Site 4, Grave 12 | I4159 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | BA | Yes | M | 242409 | 0.265 | n/a (<200 SNPs) | n/a (<200 SNPs) | S4159.E1.L1 | half | 0.119 | 0.968 | PASS | automatic | Michael Frachetti | |
448 | I12463 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324816/I12463.bam | J2a1 | L26>PF5087>PF5160>PF5197>PF5172>Z7314>PF5169>PF5174>Z7308>Z7366>CTS667 | 2850 | 1000-800 BCE | Swat Valley, Katelai | N1a1b1 | This study | Katelai_IA | Pakistan | South Asia | 34.76584167 | 72.34913333 | Grave 30, single burial , 600 | I12463 | petrous | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | LBA / IA | Yes | M | 287981 | 0.316596 | n/a (<200 SNPs) | n/a (<200 SNPs) | S12463.Y1.E1.L1 | half | 0.164 | 0.982 | PASS | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
449 | I5396 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324814/I5396.bam | J2a1 | L26>PF5087>PF5160>PF5197>PF5172>Z7314>PF5169>PF5174>pre-Z7308 | 2811 | 904-817 calBCE (2715±20 BP, PSUAMS-2790) | Swat Valley, Katelai | U4d | This study | Katelai_IA | Pakistan | South Asia | 34.76584167 | 72.34913333 | Grave 36, single burial | I5396 | petrous | separate nuclear and mtDNA target enrichment | 904-817 calBCE (2715±20 BP, PSUAMS-2790) | LBA / IA | Yes | M | 665846 | 1.127 | 0.006611 | 2.551144445 | S5396.E1.L1 | half | 0.141 | 1 | PASS (Xcontam=0.007) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa | |
453 | I4794 | Steppe_MLBA_oBMAC | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324906/I4794.bam | J2a1h2 | L25>F3133 | 3450 | 1600-1400 BCE | Aktobe, Koboda, Taldysay | C4a'b'c | This study | Taldysay_MLBA2 | Kazakhstan | Forest / Steppe | 48.2144 | 67.0205 | KZ-TAL-001, Taldysay 1, Grave N5, Central Kazakhstan Archaeology (project) 7.02 (?) | I4794 | petrous | separate nuclear and mtDNA target enrichment | no 14C date | MLBA | Yes | M | 369196 | 0.483 | 0.003793 | 1.093995341 | S4794.E1.L1 | half | 0.106 | 0.998 | PASS | manual | Michael Frachetti, Egor Kitov, Gaziz Akhatov, Antonina Yermolayeva | |
454 | I11478 | Shahr_I_Sokhta_BA1 | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324777/I11478.bam | J2a1h2 | L25>F3133>Y15604>Y15601>pre-Y15598 | 4500 | 3200-1900 BCE | Seistan, Shahr-i Sokhta | U1a1c1d | This study | Shahr_I_Sokhta_BA1 | Iran | Iran / Turan | 30.649857 | 61.400311 | 422, IRW Grave 7, possibly Period I | I11478 | petrous | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | no 14C date | BA | Yes | M | 667006 | 1.985607 | 0.003328 | 2.287008582 | S11478.Y1.E1.L1 | half | 0.146 | .. | PASS (Xcontam=0.003) | automatic | Massimo Vidale, Alfredo Coppa | |
455 | I11527 | Aigyrzhal_BA | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324558/I11527.bam | J2a1h2 | L25>F3133>Y15604>Y15601>pre-Y17404 | 3971 | 2114-1928 calBCE (3630±20 BP, PSUAMS-4750) | Aigyrzhal | HV14 | This study | Aigyrzhal_BA | Kyrgyzstan | Iran / Turan | 41.431467 | 75.885481 | Aigyrzhal K.105 | I11527 | petrous | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | 2114-1928 calBCE (3630±20 BP, PSUAMS-4750) | BA | Yes | M | 779712 | 4.067153 | 0.00665 | 5.670461755 | S11527.E1.L1 | half | 0.093 | 0.995 | PASS (Xcontam=0.007) | automatic | Michael Frachetti, Egor Kitov, Gaziz Akhatov, Antonina Yermolayeva, Kubatbek Tabaldiev, Oroz A. Soltobaev, Temirlan T. Chargynov | |
456 | I2337 | Tepe_Hissar_C | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324968/I2337.bam | J2a1h2 | L25>F3133>Z7706>F3369>Y15179>Z40298 | 5530 | 3641-3519 calBCE (4780±30 BP, PSUAMS-1919) | Tepe Hissar | I1 | This study | Tepe_Hissar_C | Iran | Iran / Turan | 36.15444444 | 54.38361111 | TH23-9, 33-23-9, Period 1 | I2337 | tooth (molar) | separate nuclear and mtDNA target enrichment | 3641-3519 calBCE (4780±30 BP, PSUAMS-1919) | C / EN | Yes | M | 521911 | 0.673423 | 0.001781 | 0.5498580125 | S2337.E1.L2,S2337.E1.L4,S2337.E1.L5 | half,half,half | 0.084,0.087,0.087 | 0.991,0.998,0.995 | PASS | automatic | Janet Monge | |
459 | I11028 | Bustan_EN | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324649/I11028.bam | J2a1h2 | L25>F3133>Y15604>Y15601>pre-Y17404 | 5102 | 3331-2972 calBCE (4445±25 BP, PSUAMS-4780) | Bustan | W1+119 | This study | Bustan_EN | Uzbekistan | Iran / Turan | 37.66666667 | 67 | UZ-BST-009, Site ?, 58-21, 119-4 | I11028 | petrous | simultaneous enrichment of nuclear and mtDNA targets (1st formulation) | 3331-2972 calBCE (4445±25 BP, PSUAMS-4780) | C / EN | Yes | M | 644891 | 1.127197 | 0.003857 | 1.933243212 | S11028.E1.L1 | half | 0.198 | 0.967 | PASS | automatic | Michael Frachetti | |
460 | I7716 | Swat_Medieval | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324946/I7716.bam | J2a1h2 | L25>F3133>Z7706>Y13534>FGC9942>Y14696>Y14699>Y14698 | 741 | 1169-1250 calCE (835±15 BP, PSUAMS-4428) | Swat Valley, Udegram, Raja Gira | H13a2a | This study | Udegram_Medieval_Ghaznavid | Pakistan | South Asia | 36.74316667 | 72.31416667 | Grave 370, single burial , DA-RAJ0317-011 | I7716 | petrous | separate nuclear and mtDNA target enrichment | 1169-1250 calCE (835±15 BP, PSUAMS-4428) | H | Yes | M | 899897 | 4.289278 | 0.005914 | 5.191635795 | S7716.E1.L1 | half | 0.115 | 0.995 | PASS (Xcontam=0.006) | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Ayushi Nayak, Nicole Boivin | |
461 | I12451 | SPGT | ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR332/ERR3324794/I12451.bam | J2a1h2 | L25 | 2850 | 1000-800 BCE | Swat Valley, Butkara II | HV13b | This study | Butkara_IA | Pakistan | South Asia | 34.75938611 | 72.37083333 | Grave 14, single burial , 588 | I12451 | petrous | simultaneous enrichment of nuclear and mtDNA targets (2nd formulation) | no 14C date | LBA / IA | Yes | M | 510322 | 0.742267 | 0.005564 | 1.397579455 | S12451.Y1.E1.L1 | half | 0.165 | 0.994 | PASS | automatic | Luca Olivieri, Muhammad Zahir, Massimo Vidale, Roberto Micheli, Alfredo Coppa |