ABCDEFGH
1
TitleAuthorURLLive/Recorded/StaticStartDateEndDate
Contact Person for Oxford study group
2
Data MngtDigital Preservation HandbookDPChttps://www.dpconline.org/handbookbook
3
Data MngtFAIR data managmentFAIRsFAIR
https://zoom.us/webinar/register/WN_P3f8bLcnQwaASsafzKT-vA
Live2020-0-08 3PM CEST2020-0-08 4PM CEST
4
Data MngtBest Practices for Biomedical Research Data Management
Elaine Martin & Julie Goldman (Harvard)
https://www.canvas.net/browse/harvard-medical/courses/biomed-research-data-mgmt
MOOC (recorded, live study groups)
Ongoing
5
Data MngtData Managment induction resources
University of Oxford
http://damaro.oucs.ox.ac.uk/induction.xml
static
6
Data MngtResearch Data Oxford site
University of Oxford
http://researchdata.ox.ac.uk/static
7
Data Simulation - RBeginner’s Guide to Simulating Data
Elizabeth Page-Gould
http://www.page-gould.com/simulation/Guide-to-Simulation-for-R.html
Static
8
Data Simulation - SPSSBeginner’s Guide to Simulating Data
Elizabeth Page-Gould
http://www.page-gould.com/simulation/Guide-to-Simulation-for-SPSS.html
Static
9
Data visualizationFundamental of data visualization Claus O. Wilke
https://serialmentor.com/dataviz/
static
10
Data visualization in ggplot2 RData Visualization: A practical introductionKieran Healyhttps://socviz.co/Book
11
Experimental DesignExperimental Design Assistant for animal researchNC3Rs
https://www.nc3rs.org.uk/experimental-design-assistant-eda
online tools
12
GitIntroduction to Git(Hub)Ana Martinovici
https://twitter.com/OSCRotterdam/status/1248248126370004993
Live
April 29th 2020 h.10:00 CEST
13
Git
Learning Git with GitKraken for use with GitHub, GitLab, Bitbucket and Azure DevOps
GitKraken
https://www.gitkraken.com/resources/learn-git?utm_campaign=Learn%20Git%20with%20GitKraken&utm_medium=email&_hsenc=p2ANqtz-8g7GQ9iS2XSOm_fvuUVFgfgxOgNh9vEJLprO2qtdCULPF7NqWJZsrQrw-dnVERX6xkqDtzGWZI-0GceJsfFrrhTaHmfQ&_hsmi=85892999&utm_source=hs_email&utm_content=85734388&hsCtaTracking=b5b92b82-1424-485a-b74d-ec5e043c6425%7C99d00f4c-8345-4ca6-b990-0b3cc79bd080
recorded
14
git, Unix/Linux, and RStudioData Science: Productivity Tools
Harvard University
https://online-learning.harvard.edu/course/data-science-productivity-tools?delta=0
Recorded
15
GitHubGitHub learning Lab
GitHub community
https://lab.github.com/online courses
16
GitLabGitLab trainingGitlab
https://about.gitlab.com/training/
online courses
17
IntegrityResearch Integrity and Ethics
University of Oxford
https://researchsupport.admin.ox.ac.uk/support/training/ethics#tab-268861static
18
IntegrityEpigeum, Research integrity training
University of Oxford
https://www.epigeum.com/courses/research/research-integrity/static
19
MetasciencePhilosophical PsychologyPaul Meelhhttp://meehl.umn.edu/talks/philosophical-psychology-1989static
20
Misc.list of Springer Link free book during covid19 crisisSpringer Link
https://link.springer.com/search/page/1?facet-content-type=%22Book%22&package=mat-covid19_textbooks&facet-language=%22En%22&sortOrder=newestFirst&showAll=true
Books
21
MplusIntroduction to MplusUCLA
https://idre.ucla.edu/calendar-event/introduction-to-mplus-2
Live
May 4, 2020 @ 1:00 pm - 4:00 pm california time
22
Open DataDetection of Open data in biomedical publications
Nico Riedel from QUEST Berlin
https://www.bihealth.org/en/notices/helmholtz-open-science-webinar-oddpub-detection-of-open-data-in-biomedical-publications/
Live
3 April 2020, 11 to 11.30 am CEST & 27 April 2020, 3 to 3.30 pm CEST
23
Open Eductation
Framework for Open and Reproducible Research Training resources
FORRThttps://forrt.org/resources/list of resources
24
Open ResearchOpen Science, Open Data, Open SourceFernades, Voshttps://pfern.github.io/OSODOS/gitbook/book
25
Open ResearchUKRN Advanced Methods Workshop materials
Several UKRN enthusiasts
https://osf.io/gupxv/january course material
26
Open ResearchOpen Science: Sharing Your Research with the WorldTUDelft
https://www.edx.org/course/open-science-sharing-your-research-with-the-world
MOOC (recorded, live study groups)
Ongoing
27
Open ResearchInnovating with Open KnowledgeEdinburghhttps://openinnovation.is.ed.ac.uk/online
28
Open ResearchREproDucible ComputAtional ResearchTUDelft
https://humtechlab.gitbook.io/redcar/
static workshops
29
Open Research
Principles, Statistical and Computational Tools for Reproducible Science
Harvard University
https://online-learning.harvard.edu/course/principles-statistical-and-computational-tools-reproducible-science?delta=0
Recorded
30
Open Research
Open Science Workshop Materials of the LMU Open Science Center
LMU Open Science Center
https://osf.io/zjrhu/Static
31
Open ResearchCOS Reproducible Research Training
Center for Open Science
https://osf.io/adkj4/Recorded
32
Open ResearchOpen Science and Replication CrisisGilad Feldman
http://mgto.org/open-science/
List of resources
33
Open ResearchOpen research in neuroimaging tutorials and resources
https://learn-neuroimaging.github.io/tutorials-and-resources/
List of resources
34
Open Research
The Turing Way is a lightly opinionated guide to reproducible data science
Turing Institute
https://the-turing-way.netlify.app/introduction/introduction
Dynamic book
35
Open Research
Open Science list of resources of the LMU Open Science Center
LMU Open Science Center
https://www.osc.uni-muenchen.de/toolbox/index.html
list of resources
36
Open ResearchWhy Open research?http://whyopenresearch.org/list of resources
37
Open ResearchSSHOC Training Toolkit in Open Research
Social Sciences and Humanities Open Cloud
https://training-toolkit.sshopencloud.eu/
list > 100 resources
38
Open ResearchOpen Science Training Bookcollaborative
https://open-science-training-handbook.gitbook.io/book/
e-book
39
Open ResearchOpen Science training toolkitFOSTER
https://www.fosteropenscience.eu/
list of resources
40
Open ResearchOpen Science ManualBenjamin Le
https://docs.google.com/document/d/1oMkTCEFtOq_DB0eoNiyk-B5QCgL6sVSF5pVvD1ONZDc/edit#heading=h.jqg22zxoq67a
ebook
41
Open ResearchTeaching replicable and reproducible scienceSISP 2018https://osf.io/x7d45/static
42
Open Researchre:produce Brisbane 2019
re:produce workshop instructors
https://osf.io/mw6d3/static
43
Open ResearchOpen Science MOOC
Open Science MOOC team
https://opensciencemooc.eu/
Online courses and resources
44
Open SourceForge Your Future with Open Source
VM (Vicky) Brasseu
https://pragprog.com/book/vbopens/forge-your-future-with-open-source/
ebook
45
PCIbexWebinar: Introduction to PCIbex for Online Experiments
Jeremy Zehr & Florian Schwarz
https://sasupenn.zoom.us/j/302473588
recorded here: https://www.pcibex.net/documentation/
46
Peer reviewHow to peer reviewPublon
https://publons.com/community/academy/course-overview
online course
47
Peer reviewThe meta research reading list for peer reviewersQUEST
https://www.bihealth.org/en/research/quest-center/mission-approaches/meta-research/meta-research-reading-list/
static
48
PosterBetter poster materialsMike Morrisonhttps://osf.io/ef53g/online
49
Preregistration/Registered ReportPreregistration/Registered Report why, evidence, how
Sarahanne Miranda Field
https://osf.io/u4vqx/static
50
ProgrammingIntroduction to Computer Science
Harvard University
https://online-learning.harvard.edu/course/cs50-introduction-computer-science?delta=0
Recorded
51
ProgrammingComputing Skills for Biologists: A Toolbox
Stefano Allesina & Madlen Wilmes
https://computingskillsforbiologists.com/
book + websiteMalika - rrox slack
52
ProgrammingFree and Open source Software Developers' European MeetingFOSDEM
https://fosdem.org/2020/schedule/tracks/
conference materialThibault, Rowan, Malika - rrox slack
53
Programminglist of 25 Free Books To Learn Linux For Free
Abhishek Prakash
https://itsfoss.com/learn-linux-for-free/
ebooks + recording
54
ProgrammingProgramming workshopsCodeBarhttps://codebar.io/LiveOngoing
55
ProgrammingCompilation of Free Linux training courses
Abhishek Prakash
https://itsfoss.com/free-linux-training-courses/
online courses
56
ProgrammingThe Missing Semester of Your Computer Science EducationMIT
https://missing.csail.mit.edu/
recordedThibault, Rowan, Malika - rrox slack
57
Programming
List of fantastic OA books on programming/data science/data viz/R, etc.
Various artistshttps://bookdown.org/static
58
ProgrammingHow to teach online carpentry workshops
Software carpentry community
https://carpentries.org/blog/2020/03/tips-for-teaching-online/Static
59
ProgrammingLearn to code for data analysis (Python, Jupyter Notebook)OpenLearn
https://www.open.edu/openlearn/science-maths-technology/learn-code-data-analysis/content-section-overview-0?active-tab=description-tab
60
PythonUsing Python for Research
Harvard University
https://online-learning.harvard.edu/course/using-python-research?delta=0
Recorded
61
PythonPython 3Code academy
https://www.codecademy.com/learn/learn-python-3
online course
62
ROpen Online Introduction to R Course
Wolfgang Viechtbauer
http://www.wvbauer.com/doku.php/course_oor
Live
2020-04-22 17:00:00 CEST
2020-04-24 22:00:00 CEST
63
RR Data ManagementUCLA
https://idre.ucla.edu/calendar-event/r-data-management
Live
Monday, May 11 from 1 to 4 p.m. california time
64
RR programming
Johns Hopkins University
https://www.coursera.org/learn/r-programming
online course
65
RR course in SEM
Sacha Epskamp, UvA
https://www.youtube.com/channel/UCMeLz8qEk77g7kBCHW23oNQrecorded
66
RRobust Tool - Data Science in RDanielle Navarrohttps://djnavarro.github.io/robust-tools/recorded youtube + slides
67
RR for DataScience
Garrett Grolemund/ Hadley Wickham
https://r4ds.had.co.nz/static
68
RRStudio’s Beginners’ Site
R Studio community
https://education.rstudio.com/learn/beginner/
static
69
RData Science: R Basics
Harvard University
https://online-learning.harvard.edu/course/data-science-r-basics?delta=0
Recorded
70
RData Science: Wrangling
Harvard University
https://online-learning.harvard.edu/course/data-science-wrangling?delta=0
Recorded
71
RR for Reproducible researchPhil McAleer
https://psyteachr.github.io/resources/
list of resources
72
RReproducible Research Data & Project Management in RAnna Krystalli
https://annakrystalli.me/rrresearchACCE20/
static
73
RMastering Software Development in R
Roger D. Peng, Sean Kross, and Brooke Anderson
https://bookdown.org/rdpeng/RProgDA/
static
74
R - GitR, Git, GitHub
Software carpentry community
https://software-carpentry.org/lessons/static
75
R ggplot2ggplot2: Elegant Graphics for Data AnalysisHadley Wickhamhttps://ggplot2-book.org/book
76
R ggplot2Introduction to ggplot2UCLA
https://idre.ucla.edu/calendar-event/introduction-to-ggplot2-3
Live
April 27, 2020 @ 1:00 pm - 4:00 pm california time
77
R ggplot2ggplot2 workshop
Thomas Lin Pedersen
https://www.youtube.com/watch?v=h29g21z0a68&t=16s
recorded workshops
78
R ggplot2Data Science: Visualization
Harvard University
https://online-learning.harvard.edu/course/data-science-visualization?delta=0
Recorded
79
R ggplot2Data VisualizationAndrew Heiss
https://datavizm20.classes.andrewheiss.com/
LiveMay 11 2020June 1 2020
80
R markdown
bookdown: Authoring Books and Technical Documents with R Markdown
Yihui Xiehttps://bookdown.org/yihui/bookdown/static
81
StatsStatistical Rethinking: A Bayesian course
Richard McElreath
https://xcelab.net/rm/statistical-rethinking/bookIlse - rrox slack
82
Stats
Multilevel Modelling for Public Health and Health Services Research
Leyland, Alastair H., Groenewegen, Peter P
https://www.springer.com/gb/book/9783030347994book
83
StatsStatistical inference (MOOC study group)Daniel Lakenswww.coursera.org/learn/statistical-inferences
MOOC (recorded, live study groups)
2020-04-09 16:00 BSTongoing
jackie.thompson@bristol.ac.uk, katie.drax@bristol.ac.uk
84
StatsImproving Your Statistical Questions (MOOC study group)Daniel Lakens
https://www.coursera.org/learn/improving-statistical-questions
MOOC (recorded, live study groups)
2020-06-30ongoing
85
StatsStructural Equation Modeling SEMSacha Epskamp
https://www.youtube.com/playlist?list=PLliBbGBc5nn3m8bXQ4CmOep3UmQ_5tVlC
recorded
86
StatsStatistical Rethinking: A Bayesian course
Richard McElreath
https://github.com/rmcelreath/statrethinking_winter2019recorded lecturesIlse - rrox slack
87
StatsStructural Equation Modeling SEMSacha Epskamp
http://sachaepskamp.com/SEM2019
slides + lectures on youtube
88
StatsStatistics for BiologistsNaturehttps://www.nature.com/collections/qghhqm/pointsofsignificancestatic
89
StatsDesign and Statistical Analysis of Animal ExperimentsILAR journal
https://academic.oup.com/ilarjournal/issue/55/3
static
90
StatsBayesian data analysisAki Vehtari
https://github.com/avehtari/BDA_course_Aalto
Recorded
91
Stats - RStatistical thinking from scratch : a primer for scientistsEdge, M. D.
https://global.oup.com/academic/product/statistical-thinking-from-scratch-9780198827634?cc=gb&lang=en&#
book
92
Stats - RCausal-Inference-for-Beginning-Undergraduates
Tom O'Grady, UCL
https://github.com/tomogradyucl/Causal-Inference-for-Beginning-Undergraduates
Recorded
93
Stats - RLearning Statistics with RDanielle Navarrohttps://learningstatisticswithr.com/static
94
Stats - RStatistical Inference via Data Science; R & tidyverse
Chester Ismay and Albert Y. Kim
https://moderndive.com/static
95
Stats - RData Science: Probability
Harvard University
https://online-learning.harvard.edu/course/data-science-probability?delta=0
Recorded
96
Stats - RData Science: Inference and Modeling
Harvard University
https://online-learning.harvard.edu/course/data-science-inference-and-modeling?delta=0
Recorded
97
Stats - RData Science: Linear Regression
Harvard University
https://online-learning.harvard.edu/course/data-science-linear-regression?delta=0
Recorded
98
Stats - RStatistics and R
Harvard University
https://online-learning.harvard.edu/course/statistics-and-r?delta=1
Recorded
99
Stats - RIntroduction to Linear Models and Matrix Algebra
Harvard University
https://online-learning.harvard.edu/course/data-analysis-life-sciences-2-introduction-linear-models-and-matrix-algebra?delta=0
Recorded
100
Stats - RLearning Statistics with RDanielle Navarro
https://learningstatisticswithr.com/
Static