| A | B | C | D | E | F | G | H | I | J | K | L | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Full Citation | URL | Date Doc Added to Library | Who Added Doc to Library | Author | Date of Publication | Title | Place of Publication | Publisher Name | Size | Abstract | Keywords/Tags |
2 | Asarian, J.E., K. De Juilio, S. Naman, D. Gaeuman, and T. Buxton. 2023. Synthesizing 87 years of scientific inquiry into Trinity River water temperatures. 180 p. + appendices. Prepared for the Trinity River Restoration Program, Weaverville, California. https://kbmp.net/images/stories/pdf/Doc_library/Asarian_etal_2023_Temperature_Synthesis_87_years.pdf | https://kbmp.net/images/stories/pdf/Doc_library/Asarian_etal_2023_Temperature_Synthesis_87_years.pdf | 9/6/2023 | Randy Turner, Klamath Basin Monitoring Program | Asarian, J.E., K. De Juilio, S. Naman, D. Gaeuman, and T. Buxton. | 2023 | Synthesizing 87 years of scientific inquiry into Trinity River water temperatures | Weaverville, CA | Trinity River Restoration Program | 180 p | ||
3 | Asarian, J.E., J. Kann, K. Perkins. 2023. Temperature Dynamics and Trends in Upper Klamath Basin Tributaries: Assessment of The Klamath Tribes Long-Term Thermograph Monitoring Program. Prepared by Riverbend Sciences, Aquatic Ecosystem Sciences, LLC., and Environmental Research for the Klamath Tribes Ambodat, Chiloquin, OR. 60p. + appendices. https://kbmp.net/stories/pdf/Doc_library/images/UpperKlamTemps_20230731_final.pdf | https://kbmp.net/stories/pdf/Doc_library/images/UpperKlamTemps_20230731_final.pdf | 9/6/2023 | Randy Turner, Klamath Basin Monitoring Program | Asarian, J.E., J. Kann, K. Perkins | 2023 | Temperature Dynamics and Trends in Upper Klamath Basin Tributaries: Assessment of The Klamath Tribes Long-Term Thermograph Monitoring Program | Chiloquin, OR | 60 p | |||
4 | Asarian, J.E. 2023. Evaluating the hydrologic effects of the 2021–2022 Scott and Shasta irrigation curtailments using remote sensing and streamflow gages. Prepared by Riverbend Sciences for the Klamath Tribal Water Quality Consortium. 50p. + appendices. https://kbmp.net/images/stories/pdf/Doc_library/ScottShastaCurtailment_Final20230713.pdf | https://kbmp.net/images/stories/pdf/Doc_library/ScottShastaCurtailment_Final20230713.pdf | 9/6/2023 | Randy Turner, Klamath Basin Monitoring Program | Asarian, J.E. | 2023 | Evaluating the hydrologic effects of the 2021–2022 Scott and Shasta irrigation curtailments using remote sensing and streamflow gages | Klamath Tribal Water Quality Consortium | 50 p | |||
5 | Laurie, G. 2021. Streambed Sediment and Equivalent Roaded Area on the Klamath National Forest. U.S. Forest Service. | http://www.kbmp.net/images/stories/pdf/Doc_library/Streambed_Sediment_and_ERA_on_the_KNF_2021.pdf | 8/18/2021 | Randy Turner, Klamath Basin Monitoring Program | Greg Laurie | 2021 | Streambed Sediment and Equivalent Roaded Area on the Klamath National Forest | Yreka, CA | U.S. Forest Service- Klamath National Forest | 26 p | ||
6 | State Water Resources Control Board, 2021. Application of Passive Sampling in The State and Regional Water Boards for Water Quality Monitoring Programs. State Water Resources Control Board White Paper. 38 p | http://kbmp.net/images/stories/pdf/Doc_library/pas_samp_wpaper.pdf | 4/8/2021 | Randy Turner, Klamath Basin Monitoring Program | State Water Resources Control Board | 2021 | Application of Passive Sampling in The State and Regional Water Boards for Water Quality Monitoring Programs | State Water Resources Control Board | 38 p | |||
7 | Genzoli, L., Bandrowski, D.J., Fricke, S., McCovey, B., Hillemeier, D., Belchik, M., and Soto, T., Eds. 2021. Klamath Dam Removal Science Coordination Workshop Summary Report. Workshop Proceedings, Medford, Oregon, February 12-13, 2020. Yurok Tribe Fisheries Department. 65 p. | http://kbmp.net/images/stories/pdf/Doc_library/Genzoli_et_al2021Klamath_Dam_removal_summary_report_monitoring_summary.pdf | 3/25/2021 | Randy Turner, Klamath Basin Monitoring Program | Genzoli, L., Bandrowski, D.J., Fricke, S., McCovey, B., Hillemeier, D., Belchik, M., and Soto, T. | 2021 | Klamath Dam Removal Science Coordination Workshop Summary Report. Workshop Proceedings, Medford, Oregon, February 12-13, 2020 | Yurok Tribe Fisheries Department | 65 p | |||
8 | David, A.T., J.E. Asarian, and F.K. Lake, 2018. Wildfire Smoke Cools Summer River and Stream Water Temperatures. Water Resources Research 54:7273–7290. doi: 10.1029/2018WR022964 | https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2018WR022964 | 11/29/2020 | Randy Turner, Klamath Basin Monitoring Program | David, A.T., J.E. Asarian, and F.K. Lake | 2018 | Wildfire Smoke Cools Summer River and Stream Water Temperatures | Water Resources Research | 18 p | |||
9 | Giudice, D., and Morgan K., California Department of Fish and Wildlife, 2020, pp. 1–29, Shasta River Salmonid Monitoring 2019 Siskiyou County, CA. | http://kbmp.net/images/stories/pdf/Doc_library/Shasta_River_2019_annual_report_Final.pdf | 11/18/2020 | Jamie Yin, Clean Water Program | Giudice, D., and Morgan K. | 2020 | Shasta River Salmonid Monitoring 2019 Siskiyou County, CA | Yreka, California | California Department of Fish and Wildlife | 29 p | ||
10 | Stephens, S. L., Westerling, A. L., Hurteau, M. D., Peery, M. Z., Schultz, C. A., & Thompson, S. (2020). Fire and climate change: conserving seasonally dry forests is still possible. Frontiers in Ecology and the Environment, 18(6), 354-360. | http://kbmp.net/images/stories/pdf/Doc_library/Stephens_et_al_2020_Fire_and_climate_change_conserving_seasonally_dry.pdf | 11/18/2020 | Jamie Yin, Clean Water Program | Stephens, S. L., Westerling, A. L., Hurteau, M. D., Peery, M. Z., Schultz, C. A., & Thompson, S. | 2020 | Fire and climate change: conserving seasonally dry forests is still possible | Washington, DC | Frontiers in Ecology and the Environment | 7 p | ||
11 | Nichols, A. L., Lusardi, R. A., & Willis, A. D. (2020). Seasonal macrophyte growth constrains extent, but improves quality, of cold‐water habitat in a spring‐fed river. Hydrological Processes, 34(7), 1587-1597. | http://kbmp.net/images/stories/pdf/Doc_library/Nichols_et_al-2020-Hydrological_Processes.pdf | 11/18/2020 | Jamie Yin, Clean Water Program | Nichols, A. L., Lusardi, R. A., & Willis, A. D. | 2020 | Seasonal macrophyte growth constrains extent, but improves quality, of cold‐water habitat in a spring‐fed river | Davis, California | Hydrological Processes | 11 p | ||
12 | Morley, S. A., Foley, M. M., Duda, J. J., Beirne, M. M., Paradis, R. L., Johnson, R. C., ... & Stapleton, J. (2020). Shifting food web structure during dam removal—Disturbance and recovery during a major restoration action. PloS one, 15(9), e0239198. | http://kbmp.net/images/stories/pdf/Doc_library/Morley_et_al_2020.pdf | 11/18/2020 | Jamie Yin, Clean Water Program | Morley, S. A., Foley, M. M., Duda, J. J., Beirne, M. M., Paradis, R. L., Johnson, R. C., ... & Stapleton, J. | 2020 | Shifting food web structure during dam removal—Disturbance and recovery during a major restoration action | Washington | PloS one | 34 p | ||
13 | Magranet, L. Siskiyou Resource Conservation District, 2018, pp. 1–29, 2017 Monitoring Report For the Scott River Water Trust. | http://kbmp.net/images/stories/pdf/Doc_library/ScottRiverWaterTrust_2017_Monitoring_Report.pdf | 11/18/2020 | Jamie Yin, Clean Water Program | Magranet, L. | 2018 | 2017 Monitoring Report For the Scott River Water Trust | Etna, California | Siskiyou Resource Conservation District | 29 p | ||
14 | Roy-Lachapelle, A., Solliec, M., Bouchard, M. F., & Sauvé, S. (2017). Detection of cyanotoxins in algae dietary supplements. Toxins, 9(3), 76. | http://kbmp.net/images/stories/pdf/Doc_library/roy-lachapelle_etal_toxins_dietary_cyanobacteria_supplements_incl_UKL_AFA_2017_Toxins.pdf | 11/18/2020 | Jamie Yin, Clean Water Program | Roy-Lachapelle, A., Solliec, M., Bouchard, M. F., & Sauvé, S. | 2017 | Detection of cyanotoxins in algae dietary supplements | Montreal, Canada | Toxins | 20 p | ||
15 | Schenk, L.N., Stewart, M.A., and Eldridge, S.L.C., 2018, Nutrient loads in the Lost River and Klamath River Basins, south-central Oregon and northern California, March 2012–March 2015: U.S. Geological Survey Scientific Investigations Report 2018–5075, 55 p., https://doi.org/10.3133/sir20185075. | http://kbmp.net/images/stories/pdf/Doc_library/Schenk_et_al_2018.pdf | 11/18/2020 | Jamie Yin, Clean Water Program | Schenk, L.N., Stewart, M.A., and Eldridge, S.L.C. | 2018 | Nutrient loads in the Lost River and Klamath River Basins, south-central Oregon and northern California | Reston, Virginia | U.S. Geological Survey | 68 p | ||
16 | Martin, B. A., Echols, K. R., Elliott, D. G., Feltz, K., Conway, C. M., & Burdick, S. M. (2019). Effects of microcystin-LR on juvenile Lost River suckers (Deltistes luxatus) during feeding trials, Upper Klamath Lake, Oregon, 2014− 16 (No. 2019-1079). US Geological Survey. | http://kbmp.net/images/stories/pdf/Doc_library/Martin_et_al_2020.pdf | 11/18/2020 | Jamie Yin, Clean Water Program | Martin, B. A., Echols, K. R., Elliott, D. G., Feltz, K., Conway, C. M., & Burdick, S. M. | 2019 | Effects of microcystin-LR on juvenile Lost River suckers (Deltistes luxatus) during feeding trials, Upper Klamath Lake, Oregon | Reston, Virginia | U.S. Geological Survey | 32 p | ||
17 | State of California Natural Resources Agency Department of Fish and Wildlife, 2018, pp. 1–18, EVALUATION OF THE PETITION FROM THE KARUK TRIBE AND THE SALMON RIVER RESTORATION COUNCIL TO LIST UPPER KLAMATH TRINITY RIVER SPRING CHINOOK SALMON (ONCORHYNCHUS TSHAWYTSCHA) AS THREATENED OR ENDANGERED. | http://kbmp.net/images/stories/pdf/Doc_library/DFW_Eval_UKTRSCS.pdf | 11/17/2020 | Jamie Yin, Clean Water Program | California Department of Fish and Wildlife | 2018 | EVALUATION OF THE PETITION FROM THE KARUK TRIBE AND THE SALMON RIVER RESTORATION COUNCIL TO LIST UPPER KLAMATH TRINITY RIVER SPRING CHINOOK SALMON (ONCORHYNCHUS TSHAWYTSCHA) AS THREATENED OR ENDANGERED | California | California Department of Fish and Wildlife | 18 p | ||
18 | Lusardi, R. A., Hammock, B. G., Jeffres, C. A., Dahlgren, R. A., & Kiernan, J. D. (2020). Oversummer growth and survival of juvenile coho salmon (Oncorhynchus kisutch) across a natural gradient of stream water temperature and prey availability: an in situ enclosure experiment. Canadian Journal of Fisheries and Aquatic Sciences, 77(2), 413-424. | http://kbmp.net/images/stories/pdf/Doc_library/Lusardietal2020.pdf | 11/17/2020 | Jamie Yin, Clean Water Program | Lusardi, R. A., Hammock, B. G., Jeffres, C. A., Dahlgren, R. A., & Kiernan, J. D. | 2020 | Oversummer growth and survival of juvenile coho salmon (Oncorhynchus kisutch) across a natural gradient of stream water temperature and prey availability: an in situ enclosure experiment. | Canada | Canadian Journal of Fisheries and Aquatic Sciences | 12 p | ||
19 | Kroll, S. A., Horwitz, R. J., Keller, D. H., Sweeney, B. W., Jackson, J. K., & Perez, L. B. (2019). Large-scale protection and restoration programs aimed at protecting stream ecosystem integrity: the role of science-based goal-setting, monitoring, and data management. Freshwater Science, 38(1), 23-39. | http://kbmp.net/images/stories/pdf/Doc_library/Kroll_et_al_2019_The_role_of_science-based_goal-setting_monitoring_and_data_management.pdf | 11/17/2020 | Jamie Yin, Clean Water Program | Kroll, S. A., Horwitz, R. J., Keller, D. H., Sweeney, B. W., Jackson, J. K., & Perez, L. B. | 2019 | Large-scale protection and restoration programs aimed at protecting stream ecosystem integrity: the role of science-based goal-setting, monitoring, and data management. | Pennsylvania | Freshwater Science | 17 p | ||
20 | Genzoli, L. (2020). Distribution of Rooted Aquatic Plants and Filamentous Algae in the Klamath River, CA. Prepared for the Klamath Tribal Water Quality Consortium. 22p. | http://kbmp.net/images/stories/pdf/Doc_library/Macrophyte_Trends_Final26Oct2020_small.pdf | 11/17/2020 | Jamie Yin, Clean Water Program | Genzoli, L. | 2020 | Distribution of Rooted Aquatic Plants and Filamentous Algae in the Klamath River, CA. | Klamath Tribal Water Quality Consortium | 22 p | |||
21 | Garwood, J. M., Fountain, A. G., Lindke, K. T., van Hattem, M. G., & Basagic, H. J. (2020). 20th Century Retreat and Recent Drought Accelerated Extinction of Mountain Glaciers and Perennial Snowfields in the Trinity Alps, California. Northwest Science, 94(1), 44-61. | http://kbmp.net/images/stories/pdf/Doc_library/Garwood_et_al-2020-20th_Century_Retreat_and_Recent_Drought_Accelerate.pdf | 11/17/2020 | Jamie Yin, Clean Water Program | Garwood, J. M., Fountain, A. G., Lindke, K. T., van Hattem, M. G., & Basagic, H. J. | 2020 | 20th Century Retreat and Recent Drought Accelerated Extinction of Mountain Glaciers and Perennial Snowfields in the Trinity Alps, California. | Northwest Science | 19 p | |||
22 | Lusardi, R. A., Jeffres, C. A., & Moyle, P. B. (2018). Stream macrophytes increase invertebrate production and fish habitat utilization in a California stream. River Research and Applications, 34(8), 1003-1012. | http://kbmp.net/images/stories/pdf/Doc_library/Lusardietal2018.pdf | 11/17/2020 | Jamie Yin, Clean Water Program | Lusardi, R. A., Jeffres, C. A., & Moyle, P. B. | 2018 | Stream macrophytes increase invertebrate production and fish habitat utilization in a California stream. | Davis, California | River Research and Applications | 10 p | ||
23 | Stillwater Sciences. 2020. Agency Wetlands Project – Analysis of Wetland Treatment Potential. Prepared by Stillwater Sciences, Berkeley, California for Trout Unlimited, Klamath Falls, Oregon. | http://kbmp.net/images/stories/pdf/Doc_library/Final_Agency Wetlands Treatment Potential_StillwaterSci.pdf | 11/17/2020 | Jamie Yin, Clean Water Program | Stillwater Sciences | 2020 | Agency Wetlands Project – Analysis of Wetland Treatment Potential | Berkeley, California | Stillwater Sciences | 56 p | ||
24 | Corson-Dosch, N.T., 2020, Benthic vertical hydraulic gradients in Upper Klamath Lake, Oregon, 2017: U.S. Geological Survey Scientific Investigations Report 2020–5029, 22 p., https://doi.org/ 10.3133/ sir20205029. | http://kbmp.net/images/stories/pdf/Doc_library/Corson_Dosch_2020_OR_2017.pdf | 11/17/2020 | Jamie Yin, Clean Water Program | Corson-Dosch, N.T. | 2017 | Benthic vertical hydraulic gradients in Upper Klamath Lake, Oregon | Portland, Oregon | U.S. Geological Survey | 32 p | ||
25 | Banet, N. V., & Hewitt, D. A. (2019). Monitoring of endangered Klamath Basin suckers translocated from Lake Ewauna to Upper Klamath Lake, Oregon, 2014− 2017 (No. 2019-1085). US Geological Survey. | http://kbmp.net/images/stories/pdf/Doc_library/Banet_et_al_2019.pdf | 11/17/2020 | Jamie Yin, Clean Water Program | Banet, N.V., and Hewitt, D.A. | 2019 | Monitoring of Endangered Klamath Basin Suckers Translocated from Lake Ewauna to Upper Klamath Lake, Oregon, 2014–2017 | Seattle, Washington | U.S. Geological Survey | 49 p | ||
26 | Essaid, H. I., Kuwabara, J. S., Corson-Dosch, N. T., Carter, J. L., & Topping, B. R. (2020). Evaluating the dynamics of groundwater, lakebed transport, nutrient inflow and algal blooms in Upper Klamath Lake, Oregon, USA. Science of The Total Environment, 142768. | http://kbmp.net/images/stories/pdf/Doc_library/Essaid_et_al_2020.pdf | 11/16/2020 | Jamie Yin, Clean Water Program | Essaid, H. I., Kuwabara, J. S., Corson-Dosch, N. T., Carter, J. L., & Topping, B. R. | 2020 | Evaluating the dynamics of groundwater, lakebed transport, nutrient inflow and algal blooms in Upper Klamath Lake, Oregon, USA | Amsterdam, Netherlands | Elsevier B.V. | 16 p | ||
27 | U.S. Department of the Interior Bureau of Reclamation, 2018, pp. 1–447, The Effects of the Proposed Action to Operate the Klamath Project from April 1, 2019 through March 31, 2029 on Federally-Listed Threatened and Endangered Species. | http://kbmp.net/images/stories/pdf/Doc_library/2018_Klamath_Project_Bi_Op.pdf | 11/16/2020 | Jamie Yin, Clean Water Program | U.S. Bureau of Reclamation | 2018 | The Effects of the Proposed Action to Operate the Klamath Project from April 1, 2019 through March 31, 2029 on Federally-Listed Threatened and Endangered Species | Washington DC | U.S. Bureau of Reclamation | 447 p | ||
28 | Garwood, J.M., A.G. Fountain, K.T. Lindke, M.G. van Hattem, and H.J. Basagic, 2020. 20th Century Retreat and Recent Drought Accelerated Extinction of Mountain Glaciers and Perennial Snowfields in the Trinity Alps, California. Northwest Science 94:44. doi: 10.3955/046.094.0104. | 8/11/2020 | Randy Turner, Klamath Basin Monitoring Program | Garwood, J.M., A.G. Fountain, K.T. Lindke, M.G. van Hattem, and H.J. Basagic | 2020 | 20th Century Retreat and Recent Drought Accelerated Extinction of Mountain Glaciers and Perennial Snowfields in the Trinity Alps, California | Northwest Science | |||||
29 | Asarian, J.E., L. Cressey, B. Bennett, J. Grunbaum, L. Cyr, T. Soto. 2019. Evidence of Climate-Driven Increases in Salmon River Water Temperatures. Prepared for the Salmon River Restoration Council by Riverbend Sciences with assistance from the Salmon River Restoration Council, Klamath National Forest, Six Rivers National Forest, and Karuk Tribe Department of Natural Resources. 53 p. + appendices. | http://kbmp.net/images/stories/pdf/Doc_library/Asarian_SalmonStreamTemps_Final_20191206.pdf | 8/4/2020 | Randy Turner, Klamath Basin Monitoring Program | Asarian, J.E., L. Cressey, B. Bennett, J. Grunbaum, L. Cyr, T. Soto | 2019 | Evidence of Climate-Driven Increases in Salmon River Water Temperatures | Forks of Salmon, CA | Salmon River Restoration Council | 53 p | ||
30 | Beckmann, J.J. and Mattson, K.G. 2012. 2012 Investigations of Bacterial Concentrations in Steams Associated with Cattle Grazing in Wilderness Areas in the Klamath National Forest in Northern California. Quartz Valley Indian Reservation. 14 p. | http://kbmp.net/images/stories/pdf/WQ_Reports/QVIR/usfs_grazing_study_2012_final.pdf | 7/2/2020 | Randy Turner, Klamath Basin Monitoring Program | Beckmann, J.J. and Mattson, K.G. | 2012 | 2012 Investigations of Bacterial Concentrations in Steams Associated with Cattle Grazing in Wilderness Areas in the Klamath National Forest in Northern California | Fort Jones, CA | Quartz Valley Indian Reservation | 14 p | ||
31 | Kann, J., and Walker, J. 2020. Detecting the effect of water level fluctuations on water quality impacting endangered fish in a shallow, hypereutrophic lake using long-term monitoring data. Hydrobiologia. https://doi.org/10.1007/s10750-020-04215-z. 22p. | http://kbmp.net/images/stories/pdf/Doc_library/Kann_and_Walker_2020.pdf | 6/25/2020 | Randy Turner, Klamath Basin Monitoring Program | Kann, J., and Walker, J. | 2020 | Detecting the effect of water level fluctuations on water quality impacting endangered fish in a shallow, hypereutrophic lake using long-term monitoring data | Hydrobiologia | ||||
32 | Jassby, A., and J. Kann. 2010. Upper Klamath Lake monitoring program: preliminary analysis of status and trends for 1990-2009. Technical Memorandum prepared by Aquatic Ecosystem Sciences LLC for the Klamath Tribes Natural Resources Department, Chiloquin OR. 55 p. | http://kbmp.net/images/stories/pdf/Doc_library/Jassby_and_Kann_2010.pdf | 6/25/2020 | Randy Turner, Klamath Basin Monitoring Program | Jassby, A., and Kann, J. | 2010 | Upper Klamath Lake monitoring program: preliminary analysis of status and trends for 1990-2009 | Chiloquin, Oregon | Klamath Tribes Natural Resources Department | 58 p | ||
33 | Walker, W.W., J. D. Walker, and J. Kann. 2012. Evaluation of Water and Nutrient Balances for the Upper Klamath Lake Basin in Water Years 1992-2010. Technical Report to the Klamath Tribes Natural Resources Department, Chiloquin, OR. 50 pp +Appendices. | http://kbmp.net/images/stories/pdf/Doc_library/Kann_Walker_upperklamath_nutrientbudget_2012_final.pdf | 6/25/2020 | Randy Turner, Klamath Basin Monitoring Program | Walker, W.W., J. D. Walker, and J. Kann | 2012 | Evaluation of Water and Nutrient Balances for the Upper Klamath Lake Basin in Water Years 1992-2010 | Chiloquin, Oregon | Klamath Tribes Natural Resources Department | 50 p | ||
34 | J. Kann, J.E. Asarian, A. St. Amand. 2014. Initial Analysis of 1990-2013 Phytoplankton and Zooplankton Data for Upper Klamath Lake (Phase I). Prepared by Aquatic Ecosystem Sciences LLC. for the Klamath Tribes Natural Resources Department. 100p. + appendices. | http://kbmp.net/images/stories/pdf/Doc_library/Phase_1_Plankton_report_June_25_2015.pdf | 6/25/2020 | Randy Turner, Klamath Basin Monitoring Program | Kann, J., Asarian, J.E., and Sman | 2015 | Initial Analysis of 1990-2013 Phytoplankton and Zooplankton Data for Upper Klamath Lake (Phase I) | Chiloquin, Oregon | Klamath Tribes Natural Resources Department | 100 p | ||
35 | Nielsen, J. M., Kann, J., and Brett M. T. 2018. Combined analyses of long-term (1990-2015) water quality and plankton dynamics of Upper Klamath Lake (Phase II). Prepared by Aquatic Ecosystem Sciences LLC and University of Washington for the Klamath Tribes Natural Resources Department. 107p. | http://kbmp.net/images/stories/pdf/Doc_library/Phase_II_Plankton_report_July_20_2018.pdf | 6/25/2020 | Randy Turner, Klamath Basin Monitoring Program | Nielsen, J. M., Kann, J., and Brett M. T. | 2018 | Combined analyses of long-term (1990-2015) water quality and plankton dynamics of Upper Klamath Lake (Phase II) | Chiloquin, Oregon | Klamath Tribes Natural Resources Department | 107 p | ||
36 | Schenk, L.N., Stewart, M.A., and Eldridge, S.L.C., 2018, Nutrient loads in the Lost River and Klamath River Basins, south-central Oregon and northern California, March 2012–March 2015: U.S. Geological Survey Scientific Investigations Report 2018–5075, 55 p., https://doi.org/10.3133/sir20185075. | https://www.usgs.gov/centers/or-water/science/nutrient-loading-lost-river?qt-science_center_objects=3#qt-science_center_objects | 7/3/2018 | Randy Turner, Klamath Basin Monitoring Program | Schenk, L.N., Stewart, M.A., and Eldridge, S.L.C. | 2018 | Nutrient Loads in the Lost River and Klamath River Basins, South-Central Oregon and Northern California, March 2012–March 2015 | U.S. Geological Survey | 68 p | |||
37 | Pollock, M.M., G.M. Lewallen, K. Woodruff, C.E. Jordan and J.M. Castro (Editors) 2017. The Beaver Restoration Guidebook: Working with Beaver to Restore Streams, Wetlands, and Floodplains. Version 2.0. United States Fish and Wildlife Service, Portland, Oregon. 219 pp. | https://www.fws.gov/oregonfwo/Documents/BRGv.2.0_6.30.17_forpublicationcomp.pdf | 8/15/2017 | Randy Turner, Klamath Basin Monitoring Program | Pollock, M.M., G.M. Lewallen, K. Woodruff, C.E. Jordan and J.M. Castro (Editors) | 2017 | The Beaver Restoration Guidebook: Working with Beaver to Restore Streams, Wetlands, and Floodplains. Version 2.0 | Portland, Oregon | United States Fish and Wildlife Service | 219 p | ||
38 | ESSA. 2017. Klamath Basin Integrated Fisheries Restoration and Monitoring (IFRM) Synthesis Report. 416 pp + Appendices. | http://kbmp.net/images/stories/pdf/WQ_Reports/Klamath_Synthesis_Report_20170814_FINAL.pdf | 8/15/2017 | Randy Turner, Klamath Basin Monitoring Program | ESSA | 2017 | Klamath Basin Integrated Fisheries Restoration and Monitoring (IFRM) Synthesis Report | 416 p + Appendices | ||||
39 | Burdick, S.M., Elliott, D.G., Ostberg, C.O., Conway, C.M., Dolan-Caret, A., Hoy, M.S., Feltz, K.P., and Echols, K.R., 2015, Health and condition of endangered juvenile Lost River and shortnose suckers relative to water quality and fish assemblages in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California: U.S. Geological Survey Open-File Report 2015-1217, 56 p., http://dx.doi.org/10.3133/ofr20151217. | http://dx.doi.org/10.3133/ofr20151217 | 7/26/2017 | Randy Turner, Klamath Basin Monitoring Program | Burdick, S.M., Elliott, D.G., Ostberg, C.O., Conway, C.M., Dolan-Caret, A., Hoy, M.S., Feltz, K.P., and Echols, K.R. | 2015 | Health and condition of endangered juvenile Lost River and shortnose suckers relative to water quality and fish assemblages in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California | U.S. Geological Survey Open-File Report 2015-1217 | 56 p | |||
40 | Carpenter, K.D., Snyder, D.T., Duff, J.H., Triska, F.J., Lee, K.K., Avanzino, R.J., and Sobieszczyk, Steven, 2009, Hydrologic and water-quality conditions during restoration of the Wood River Wetland, upper Klamath River basin, Oregon, 2003–05: U.S. Geological Survey Scientific Investigations Report 2009-5004, 66 p. (Available at http://pubs.usgs.gov/sir/2009/5004) | http://pubs.usgs.gov/sir/2009/5004 | 7/26/2017 | Randy Turner, Klamath Basin Monitoring Program | Carpenter, K.D., Snyder, D.T., Duff, J.H., Triska, F.J., Lee, K.K., Avanzino, R.J., and Sobieszczyk, S. | 2009 | Hydrologic and water-quality conditions during restoration of the Wood River Wetland, upper Klamath River basin, Oregon, 2003–05 | U.S. Geological Survey Scientific Investigations Report 2009-5004 | 66 p | |||
41 | Cheng, F. Y., and Basu, N. B.. 2017. Biogeochemical hotspots: Role of small water bodies in landscape nutrient processing. Water Resources Research. 53:6. 19 p. http://onlinelibrary.wiley.com/doi/10.1002/2016WR020102/full | http://onlinelibrary.wiley.com/doi/10.1002/2016WR020102/full | 7/26/2017 | Randy Turner, Klamath Basin Monitoring Program | Cheng, F. Y., and Basu, N. B. | 2017 | Biogeochemical hotspots: Role of small water bodies in landscape nutrient processing | Water Resources Research | 19 p | |||
42 | Rhodes, J.R. 2016. Field Review of Stream, Riparian, and Watershed Conditions Affected by Livestock Grazing in the Big Meadow Allotment on the Klamath National Forest. Planeto Azul Hydrology. Portland, OR. 44 pp. | http://www.kbmp.net/images/stories/pdf/Doc_library/RhodesRpt_KNF-BMA_2-18-16.pdf | 1/27/2017 | Randy Turner, Klamath Basin Monitoring Program | Rhodes, J.R. | 2016 | Field Review of Stream, Riparian, and Watershed Conditions Affected by Livestock Grazing in the Big Meadow Allotment on the Klamath National Forest | Planeto Azul Hydrology | 44 p | |||
43 | East, A.E., G.R. Pess, J.A. Bountry, C.S. Magirl, A.C. Ritchie, J.B. Logan, T.J. Randle,M.C.Mastin, J.T. Minear, J.J. Duda, M.C. Liermann, M.L. McHenry, T.J. Beechie, and P.B. Shafroth. 2014. Large-scale dam removal on the Elwha River, Washington, USA: River channel and floodplain geomorphic change. Geomorphology 228: 765-786. 22 p. | http://kbmp.net/images/stories/pdf/Doc_library/East_etal_Elwha_2015.pdf | 12/30/2016 | Randy Turner, Klamath Basin Monitoring Program | East, A.E., G.R. Pess, J.A. Bountry, C.S. Magirl, A.C. Ritchie, J.B. Logan, T.J. Randle,M.C.Mastin, J.T. Minear, J.J. Duda, M.C. Liermann, M.L. McHenry, T.J. Beechie, and P.B. Shafroth. | 2014 | Large-scale dam removal on the Elwha River, Washington, USA: River channel and floodplain geomorphic change | Geomorphology | 22 p | Fluvial geomorphology, Dams, Dam removal, Channel evolution, Floodplain, Sediment wave | ||
44 | Eldridge, S.L.C., Wood, T.M., and Echols, K.R.. 2012. Spatial and temporal dynamics of cyanotoxins and their relation to other water quality variables in Upper Klamath Lake, Oregon, 2007–09. U.S. Geological Survey Scientific Investigations Report 2012–5069. 34 p | https://pubs.usgs.gov/sir/2012/5069/pdf/sir20125069.pdf | 12/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Eldridge, S.L.C., Wood, T.M., and Echols, K.R. | 2012 | Spatial and temporal dynamics of cyanotoxins and their relation to other water quality variables in Upper Klamath Lake, Oregon, 2007–09 | U.S. Geological Survey | 34 p | |||
45 | Schenk, L.N., Anderson, C.W., Diaz, Paul, and Stewart, M.A.. 2016. Evaluating external nutrient and suspendedsediment loads to Upper Klamath Lake, Oregon, using surrogate regressions with real-time turbidity and acoustic backscatter data. U.S. Geological Survey Scientific Investigations Report 2016–5167. 46 p. | https://pubs.usgs.gov/sir/2016/5167/sir20165167.pdf | 12/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Schenk, L.N., Anderson, C.W., Diaz, Paul, and Stewart, M.A. | 2016 | Evaluating external nutrient and suspendedsediment loads to Upper Klamath Lake, Oregon, using surrogate regressions with real-time turbidity and acoustic backscatter data | U.S. Geological Survey | 46 p | |||
46 | Hamilton, J.B., Rondorf, D.W., Tinniswood, W.R., Leary, R.J., Mayer, T., Gavette, C., and Casal, L.A. 2016. The Persistence and Characteristics of Chinook Salmon Migrations to the Upper Klamath River Prior to Exclusion by Dams. Oregon Historical Society. Vol 117, No. 3. 26 p. | http://kbmp.net/images/stories/pdf/Doc_library/Hamilton_Chinook-Salmon-Migrations_OHQ_117_3_Fall-2016_Spread.pdf | 11/12/2016 | Randy Turner, Klamath Basin Monitoring Program | Hamilton, J.B., Rondorf, D.W., Tinniswood, W.R., Leary, R.J., Mayer, T., Gavette, C., and Casal, L.A. | 2016 | The Persistence and Characteristics of Chinook Salmon Migrations to the Upper Klamath River Prior to Exclusion by Dams | Oregon Historical Society | 26 p | |||
47 | Genzoli, L., and Kann, J. 2016. Evaluation of phycocyanin probes as a monitoring tool for toxigenic cyanobacteria in the Klamath River below Iron Gate Dam. Prepared for the Klamath Tribal Water Quality Consortium. 78 pages. | http://kbmp.net/images/stories/pdf/Doc_library/Klamth_River_Phycocyanin_Report_FINAL_11-8-2016.pdf | 11/11/2016 | Randy Turner, Klamath Basin Monitoring Program | Genzoli, L., and Kann, J. | 2016 | Evaluation of phycocyanin probes as a monitoring tool for toxigenic cyanobacteria in the Klamath River below Iron Gate Dam | Klamath Tribal Water Quality Consortium | 78 p | |||
48 | Oliver, A. A., Dahlgren, R. A., and Deas, M. L. 2014. The upside-down river: Reservoirs, algal blooms, and tributaries affect temporal and spatial patterns in nitrogen and phosphorus in the Klamath River, USA. Journal of Hydrology. 519 (2014) 164-176. 13 p. | http://kbmp.net/images/stories/pdf/Doc_library/KlamathNutrientsUpsideDownRiver_Oliver_et_al_2014_JofHydrology.pdf | 9/26/2016 | Randy Turner, Klamath Basin Monitoring Program | Oliver, A. A., Dahlgren, R. A., and Deas, M. L. | 2014 | The upside-down river: Reservoirs, algal blooms, and tributaries affect temporal and spatial patterns in nitrogen and phosphorus in the Klamath River, USA | Journal of Hydrology | 13 p. | |||
49 | Sullivan, A.B., and Rounds, S.A., 2016, Modeling water quality, temperature, and flow in Link River, south-central Oregon: U.S. Geological Survey Open-File Report 2016–1146, 31 p., http://dx.doi.org/10.3133/ofr20161146. | http://dx.doi.org/10.3133/ofr20161146 | 9/12/2016 | Randy Turner, Klamath Basin Monitoring Program | Sullivan, A.B., and Rounds, S.A. | 2016 | Modeling water quality, temperature, and flow in Link River, south-central Oregon | Portland, OR | USGS | 31 p | ||
50 | Tullos, D. D., Collins, M. J., Bellmore, J. R., Bountry, J. A., Connolly, P. J., Shafroth, P. B., and Wilcox, A. C. 2016. Synthesis of Common Management Concerns Associated with Dam Removal. Journal of the American Water Resources Association (JAWRA) 1-28. DOI: 10.1111/1752-1688.12450 | http://kbmp.net/images/stories/pdf/Doc_library/Tullos_Collins_etal_2016_JAWRA.pdf | 9/9/2016 | Randy Turner, Klamath Basin Monitoring Program | Tullos, D. D., Collins, M. J., Bellmore, J. R., Bountry, J. A., Connolly, P. j., Shafroth, P. B., and Wilcox, A. C. | 2016 | Synthesis of common management concerns associated with dam removal | Journal of the American Water Resources Association | 28 p | Managers make decisions regarding if and how to remove dams in spite of uncertainty surrounding physical and ecological responses, and stakeholders often raise concerns about certain negative effects, regardless of whether these concerns are warranted at a particular site. We used a dam-removal science database supplemented with other information sources to explore seven frequently raised concerns, herein Common Management Concerns (CMCs). We investigate the occurrence of these concerns and the contributing biophysical controls. The CMCs addressed are the following: degree and rate of reservoir sediment erosion, excessive channel incision upstream of reservoirs, downstream sediment aggradation, elevated downstream turbidity, drawdown impacts on local water infrastructure, colonization of reservoir sediments by nonnative plants, and expansion of invasive fish. Biophysical controls emerged for some of the concerns, providing managers with information to assess whether a given concern is likely to occur at a site. To fully assess CMC risk, managers should concurrently evaluate site conditions and identify the ecosystem or human uses that will be negatively affected if the biophysical phenomenon producing the CMC occurs. We show how many CMCs have one or more controls in common, facilitating the identification of multiple risks at a site, and demonstrate why CMC risks should be considered in the context of other factors such as natural watershed variability and disturbance history. | sediment management; headcut; aggradation; reservoir erosion; reservoir drawdown; wells; turbidity; nonnative plants; invasive fish; dam removal; river restoration | |
51 | Bellmore, J. R., Duda, J. J., Craig, L. S., Greene, S. L., Torgensen, C. E., Collins, M. J., and Vittum, K. 2016. Study and trends of dam removal research in the United States. WIREs Water. doi: 10.1002/wat2.1164. 64 p. | http://kbmp.net/images/stories/pdf/Doc_library/Bellmore_et_al-2016-Wiley_Interdisciplinary_Reviews__Water.pdf | 9/9/2016 | Randy Turner, Klamath Basin Monitoring Program | Bellmore, J. R., Duda, J. J., Craig, L. S., Greene, S. L., Torgensen, C. E., Collins, M. J., and Vittum, K. | 2016 | Study and trends of dam removal research in the United States | WIREs Water | 13 p | Aging infrastructure coupled with growing interest in river restoration has driven a dramatic increase in the practice of dam removal. With this increase, there has been a proliferation of studies that assess the physical and ecological responses of rivers to these removals. As more dams are considered for removal, scientific information from these dam-removal studies will increasingly be called upon to inform decisions about whether, and how best, to bring down dams. This raises a critical question: what is the current state of dam-removal science in the United States? To explore the status, trends, and characteristics of dam-removal research in the U.S., we searched the scientific literature and extracted basic information from studies on dam removal. Our literature review illustrates that although over 1200 dams have been removed in the U.S., fewer than 10% have been scientifically evaluated, and most of these studies were short in duration (<4 years) and had limited (1–2 years) or no pre-removal monitoring. The majority of studies focused on hydrologic and geomorphic responses to removal rather than biological and water-quality responses, and few studies were published on linkages between physical and ecological components. Our review illustrates the need for long-term, multidisciplinary case studies, with robust study designs, in order to anticipate the effects of dam removal and inform future decision making. | ||
52 | Pischel, E.M., and Gannett, M.W., 2015, Effects of groundwater pumping on agricultural drains in the Tule Lake subbasin, Oregon and California: U.S. Geological Survey Scientific Investigations Report 2015–5087, 44 p. | http://dx.doi.org/10.3133/sir20155087 | 8/1/2016 | Randy Turner, Klamath Basin Monitoring Program | Pischel, E.M., and Gannett, M.W. | 2015 | Effects of groundwater pumping on agricultural drains in the Tule Lake subbasin, Oregon and California | U.S. Geological Survey Scientific Investigations Report 2015–5087 | 44 p | |||
53 | Walker, J. D., J. Kann, and W.W. Walker. 2015. Spatial and temporal nutrient loading dynamics in the Sprague River Basin, Oregon. Prepared by Aquatic Ecosystem Sciences, J. D. Walker, and W. W. Walker for the Klamath Tribes Natural Resources Department. 73p. + appendices. | http://kbmp.net/images/stories/pdf/Doc_library/Walker_et_al._2015b.pdf | 7/25/2016 | Randy Turner, Klamath Basin Monitoring Program | Walker, J. D., J. Kann, and W.W. Walker | 2015 | Spatial and temporal nutrient loading dynamics in the Sprague River Basin, Oregon | Prepared for the Klamath Tribes Natural Resources Department | 73 p | |||
54 | Ciotti, D., S. M. Griffith, J. Kann, and J. Baham. 2010. Nutrient and Sediment Transport on Flood-Irrigated Pasture in the Klamath Basin, Oregon. Rangeland Ecological Management, 63:308-316. 9 p. | http://kbmp.net/images/stories/pdf/Doc_library/Ciotti_et_al._2010.pdf | 7/25/2016 | Randy Turner, Klamath Basin Monitoring Program | Ciotti, D., S. M. Griffith, J. Kann, and J. Baham | 2010 | Nutrient and Sediment Transport on Flood-Irrigated Pasture in the Klamath Basin, Oregon | Rangeland Ecological Management | 9 p | |||
55 | Luciano V. Chiaramonte, R. Adam Ray, R. Alex Corum, Toz Soto, Sascha L. Hallett & Jerri L. Bartholomew. 2016. Klamath River Thermal Refuge Provides Juvenile Salmon Reduced Exposure to the Parasite Ceratonova shasta. Transactions of the American Fisheries Society. 145:4, 810-820 | http://kbmp.net/images/stories/pdf/Doc_library/Klamath_Thermal_Refuge_Cshasta_Paper_2016.pdf | 7/20/2016 | Randy Turner, Klamath Basin Monitoring Program | Luciano V. Chiaramonte, R. Adam Ray, R. Alex Corum, Toz Soto, Sascha L. Hallett & Jerri L. Bartholomew | 2016 | Klamath River Thermal Refuge Provides Juvenile Salmon Reduced Exposure to the Parasite Ceratonova shasta | Transactions of the American Fisheries Society. 145:4 | 11 p | Salmon in the Klamath River of northern California contend with water temperatures that reach stressful and sometimes lethal levels during summer, forcing them to seek thermal refuge at coolwater tributary junctions. During migration, these fish also encounter a range of pathogens that affect their survival. A significant myxozoan parasite, Ceratonova shasta, causes enteronecrosis in salmon, and this disease increases in severity as temperature and parasite dose increase. In complementary laboratory and field studies, we examined how the use of a thermal refuge (an area at least 2°C colder than the main stem) affects progression of enteronecrosis in juvenile Chinook Salmon Oncorhynchus tshawytscha and Coho Salmon O. kisutch. We compared fish use, water temperature, and C. shasta concentration in a refuge at the Beaver Creek–Klamath River confluence during the summer in 2008 and 2010. Salmonid numbers ranged from 190 to 2,125, and temperatures were 2–8°C cooler than in the main stem. In June and July of 2008, parasite levels in the refuge were lower than in the main stem, where they exceeded 100 spores/L. In 2010, main-stem parasite levels did not exceed 10 spores/L, and levels in the refuge were lower in June. In the laboratory, we compared the effect of fluctuating and constant temperature treatments on mortality rates of Chinook Salmon and Coho Salmon exposed to C. shasta. Under most experimental conditions, fluctuating temperature, within the range experienced by fish using thermal refuges (15.5–21°C), had no significant effect on disease progression compared with a constant midrange temperature (18.5°C) with equivalent degree-day accumulation. We propose that in the Klamath River thermal refuges can function as disease refuges from enteronecrosis by (1) providing areas of decreased C. shasta exposure and/or (2) alleviating disease effects as a result of relatively lower water temperatures. The trend of increasing water temperatures suggests that juvenile salmon will rely even more on these critical habitats in the future. | ||
56 | Jones, E.C., Perry, R.W., Risley, J.C., Som, N.A., and Hetrick, N.J., 2016, Construction, calibration, and validation of the RBM10 water temperature model for the Trinity River, northern California: U.S. Geological Survey Open-File Report 2016–1056, 46 p. | https://pubs.er.usgs.gov/publication/ofr20161056 | 7/20/2016 | Randy Turner, Klamath Basin Monitoring Program | Jones, E.C., Perry, R.W., Risley, J.C., Som, N.A., and Hetrick, N.J. | 2016 | Construction, calibration, and validation of the RBM10 water temperature model for the Trinity River, northern California | U.S. Geological Survey Open-File Report 2016–1056 | 46 p | |||
57 | Oregon Watershed Enhancement Board. 2016. Upper Klamath Special Investment Partnership Accomplishments Summary Report. Oregon Watershed Enhancement Board. 12 p. | http://www.oregon.gov/OWEB/docs/board/2016/April/UKSIP-Accomplishments-Report-2016.pdf | 5/5/2016 | Randy Turner, Klamath Basin Monitoring Program | Oregon Watershed Enhancement Board | 2016 | Upper Klamath Special Investment Partnership Accomplishments Summary Report | Oregon Watershed Enhancement Board | 12 p | |||
58 | Kennedy, T.A, J.D. Muehlbauer, C.B. Yackulic, D.A. Lytle, S.W. Miller, K.L. Dibble, E.W. Kortenhoeven, A.N. Metcalfe, and C.V. Baxter. 2016. Flow Management for Hydropower Extirpates Aquatic Insects, Undermining River Food Webs. BioScience | http://bioscience.oxfordjournals.org/content/early/2016/04/30/biosci.biw059.abstract | 5/2/2016 | Randy Turner, Klamath Basin Monitoring Program | Kennedy, T.A, J.D. Muehlbauer, C.B. Yackulic, D.A. Lytle, S.W. Miller, K.L. Dibble, E.W. Kortenhoeven, A.N. Metcalfe, and C.V. Baxter | 2016 | Flow Management for Hydropower Extirpates Aquatic Insects, Undermining River Food Webs | Bioscience | Dams impound the majority of rivers and provide important societal benefits, especially daily water releases that enable on-peak hydroelectricity generation. Such “hydropeaking” is common worldwide, but its downstream impacts remain unclear. We evaluated the response of aquatic insects, a cornerstone of river food webs, to hydropeaking using a life history–hydrodynamic model. Our model predicts that aquatic-insect abundance will depend on a basic life-history trait—adult egg-laying behavior—such that open-water layers will be unaffected by hydropeaking, whereas ecologically important and widespread river-edge layers, such as mayflies, will be extirpated. These predictions are supported by a more-than-2500-sample, citizen-science data set of aquatic insects from the Colorado River in the Grand Canyon and by a survey of insect diversity and hydropeaking intensity across dammed rivers of the Western United States. Our study reveals a hydropeaking-related life history bottleneck that precludes viable populations of many aquatic insects from inhabiting regulated rivers. | Biodiversity; dams; biological traits; river ecology; citizen science | ||
59 | Nightengale, T, A. Shelly, and R. Beamesderfer. 2016. Lower Deschutes River Macroinvertebrate & Periphyton Study: Final Report. Prepared for Portland General Electric Company by R2 Resource Consultants, Inc. 279 p. | https://www.portlandgeneral.com/-/media/public/corporate-responsibility/environmental-stewardship/water-quality-habitat-protection/deschutes/documents/deschutes-bmi-final-report.pdf | 5/2/2016 | Randy Turner, Klamath Basin Monitoring Program | Nightengale, T, A. Shelly, and R. Beamesderfer | 2016 | Lower Deschutes River Macroinvertebrate & Periphyton Study: Final Report | Redmond, WA | Portland General Electric Company | 279 p | ||
60 | Hallett, S.L., R.A. Ray, C.N. Hurst, R.A. Holt, G.R. Buckles, S.D. Atkinson, and J.L. Bartholomew. 2012. Density of the Waterborne Parasite Ceratomyxa shasta and Its Biological Effects on Salmon. Applied and Environmental Microbiology, 78(10):3724. 8 p. | http://aem.asm.org/content/78/10/3724.full.pdf+html | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Hallett, S.L., R.A. Ray, C.N. Hurst, R.A. Holt, G.R. Buckles, S.D. Atkinson, and J.L. Bartholomew | 2012 | Density of the Waterborne Parasite Ceratomyxa shasta and Its Biological Effects on Salmon | Applied and Environmental Microbiology | 8 p | The myxozoan parasite Ceratomyxa shasta is a significant pathogen of juvenile salmonids in the Pacific Northwest of North America and is limiting recovery of Chinook (Oncorhynchus tshawytscha) and coho (O. kisutch) salmon populations in the Klamath River. We conducted a 5-year monitoring program that comprised concurrent sentinel fish exposures and water sampling across 212 river kilometers of the Klamath River. We used percent mortality and degree-days to death to measure disease severity in fish. We analyzed water samples using quantitative PCR and Sanger sequencing, to determine total parasite density and relative abundance of C. shasta genotypes, which differ in their pathogenicity to salmonids. We detected the parasite throughout the study zone, but parasite density and genetic composition fluctuated spatially and temporally. Chinook and coho mortality increased with density of their specific parasite genotype, but mortality-density thresholds and time to death differed. A lethality threshold of 40% mortality was reached with 10 spores liter−1 for Chinook but only 5 spores liter−1 for coho. Parasite density did not affect degree-days to death for Chinook but was negatively correlated for coho, and there was wider variation among coho individuals. These differences likely reflect the different life histories and genetic heterogeneity of the salmon populations. Direct quantification of the density of host-specific parasite genotypes in water samples offers a management tool for predicting host population-level impacts. | ||
61 | Otten, T.G., and H.W. Paerl. 2015. Health Effects of Toxic Cyanobacteria in U.S. Drinking and Recreational Waters: Our Current Understanding and Proposed Direction. Curr Envir Health Rpt (2015) 2:75–84. | http://kbmp.net/images/stories/pdf/Doc_library/Health_Effects_of_Toxic_Cyanobacteria_Otten_Paerl.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Otten, T.G., and H.W. Paerl | 2015 | Health Effects of Toxic Cyanobacteria in U.S. Drinking and Recreational Waters: Our Current Understanding and Proposed Direction | Curr Envir Health Rpt | 10 p | Cyanobacterial-derived water quality impairment issues are a growing concern worldwide. In addition to their ecological impacts, these organisms are prolific producers of bioactive secondary metabolites, many of which are known human intoxicants. To date only a handful of these compounds have been thoroughly studied and their toxicological risks estimated. While there are currently no national guidelines in place to deal with this issue, it is increasingly likely that within the next several years guidelines will be implemented. The intent of this review is to survey all relevant literature pertaining to cyanobacterial harmful algal bloom secondary metabolites, to inform a discussion on how best to manage this global public health threat. | ||
62 | Strange, J.S. 2013. Factors influencing the behavior and duration of residence of adult Chinook salmon in a stratified estuary. Environmental Biology of Fishes, Vol. 96 (2):225-243. | http://kbmp.net/images/stories/pdf/Doc_library/Strange_chinook_estuary_EBF_2012.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Strange, J.S. | 2013 | Factors influencing the behavior and duration of residence of adult Chinook salmon in a stratified estuary | Environmental Biology of Fishes | 19 p | The duration of residence, behavior, and thermal experience of adult Chinook salmon (Oncorhynchus tshawytscha) in a stratified lagoon-type estuary over a four-year period was determined using acoustic and radio biotelemetry transmitters and archival temperature tags. Results did not support the hypothesis that adult Chinook salmon would hold extensively and migrate slowly through the estuarine lagoon with return trips to the sea and use of the salt wedge for behavioral thermo-osmoregulation in response to high summer water temperatures. Passive tidal transport was not observed as predicted and entry from the sea to the estuarine lagoon occurred during all tidal phases suggesting that conserving energy was not a priority for fish during the estuarine phase of their migration. An unexpected finding was that the persistent pursuit pressure of pinnipeds, especially from California sea lions (Zalophus californianus), appeared to negate the suitability of estuarine lagoon as holding habitat. This finding led to the hypothesis that the risk of pinniped predation was primarily responsible for the brief residence (<24 h on average) and rapid migration (mean 1.2 km/h, 0.42 body lengths/s) of adult Chinook salmon in the estuarine lagoon, especially given its relatively small size (7 km). This hypothesis will be difficult to test without exclusion of pinnipeds. Thermal records of fish that retreated back to the sea after tagging suggested that use of the marine river plume could be important for osmotic adaption to allow rapid migration through estuaries, which often contain concentrations of predators anticipating the return of migrating salmon. Alternatively, use of the marine river plume could have occurred independent of predators. Fish retreating back to the sea should be considered a tagging effect as downstream movement commonly occurs when adult salmonids are released after tagging. There was no evidence of any other tagging effects or biased behavior by fish tagged in this study. Regardless of the reasons, the successful migration of fish that held for weeks in the sea after tagging indicates that there could be considerable flexibility in the river entry timing of some salmon stocks. Tagging adult salmonids in the sea as they approach their natal rivers is ideal but the associated logistical challenges and expense make tagging fish immediately upon entrance to river mouths the next best option when possible. | Chinook salmon, Estuary, Migration, River entry, Pinnipeds, Tidal transport | |
63 | Bjork, S.J., J.D. Alexander, Y. Zhang, J.O. Sunyer, C.N. Hurst, J.L. Bartholomew, and M.E. Alonso-Naveiro. 2014. Defenses of susceptible and resistant Chinook salmon (Onchorhynchus tshawytscha) against the myxozoan parasite Ceratomyxa shasta. Fish and Shellfish Immunology, 37(1):87-95. 9 p. | http://kbmp.net/images/stories/pdf/Doc_library/Bjork_Cs_2014_immune_FSI.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Bjork, S.J., J.D. Alexander, Y. Zhang, J.O. Sunyer, C.N. Hurst, J.L. Bartholomew, and M.E. Alonso-Naveiro | 2014 | Defenses of susceptible and resistant Chinook salmon (Onchorhynchus tshawytscha) against the myxozoan parasite Ceratomyxa shasta | Fish and Shellfish Immunology | 9 p | We investigated intra-specific variation in the response of salmon to infection with the myxozoan Ceratomyxa shasta by comparing the progress of parasite infection and measures of host immune response in susceptible and resistant Chinook salmonOncorhynchus tshawytscha at days 12, 25 and 90 post exposure. There were no differences in invasion of the gills indicating that resistance does not occur at the site of entry. In the intestine on day 12, infection intensity and Ig+ cell numbers were higher in susceptible than resistant fish, but histological examination at that timepoint showed more severe inflammation in resistant fish. This suggests a role for the immune response in resistant fish that eliminates some parasites prior to or soon after reaching the intestine. Susceptible fish had a higher IFNγ, IL-6 and IL-10 response at day 12, but all died of fatal enteronecrosis by day 25. The greatest fold change in IFNγ expression was detected at day 25 in resistant Chinook. In addition, the number of Ig+ cells in resistant Chinook also increased by day 25. By day 90, resistant Chinook had resolved the inflammation, cytokine expression had decreased and Ig+ cell numbers were similar to uninfected controls. Thus, it appears that the susceptible strain was incapable of containing or eliminating C. shasta but resistant fish: 1) reduced infection intensity during early intestinal infection, 2) elicited an effective inflammatory response in the intestine that eliminated C. shasta, 3) resolved the inflammation and recovered from infection. | Resistance; Immune response; Inflammation; Cytokine; Myxozoa | |
64 | Otten, T.G, J.R. Crosswell, S. Mackey, and T W. Dreher. 2015. Application of molecular tools for microbial source tracking and public health risk assessment of a Microcystis bloom traversing 300 km of the Klamath River. Harmful Algae 46:71-81 | http://kbmp.net/images/stories/pdf/Doc_library/Otten_Klamath_River_Microcystis_Source_Tracking_2015_Harmful_Algae.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Otten, T.G, J.R. Crosswell, S. Mackey, and T W. Dreher | 2015 | Application of molecular tools for microbial source tracking and public health risk assessment of a Microcystis bloom traversing 300 km of the Klamath River | Harmful Algae | 11 p | Microcystis is a globally distributed cyanobacterium that forms dense surface scums in eutrophic freshwater bodies and is also capable of producing potent liver toxins (microcystins). Although it is not commonly observed in riverine environments, high concentrations of Microcystis cells – and microcystins – have been observed on a recurring basis in recent years throughout the Klamath River system (Oregon/California). In this study, a variety of genetic approaches were used to assess the connectivity ofMicrocystis populations found throughout the Klamath River. In 2012, samples were collected bi-weekly from 16 sites spanning the entire system, including all five reservoirs and Upper Klamath Lake. A newly designed QPCR assay targeting a conserved region within the c-phycocyanin β-subunit gene (cpcB) was used along with a microcystin synthetase gene (mcyE) targeting QPCR assay to quantify the spatiotemporal patterns of total and toxigenic Microcystis. These data were compared with traditional metrics, such as microscopic cell counts and analytical toxin measurements, and the public health implications are discussed. Overall, Microcystis was a minor constituent of the phytoplankton community above Copco and Iron Gate Reservoirs, although it was highly prolific within these reservoirs and our data indicate that most of these populations originate internally. Spatiotemporal variations in the proportional abundances of a single nucleotide polymorphism (SNP), identified by 454 deep sequencing of the cpcBA genes, was used to fingerprint Iron Gate Reservoir as the source of downriver Microcystisassemblages. Throughout the study period, the Microcystis populations remained highly toxic, with total microcystin concentrations ranging from 165 μg/L in Copco Reservoir to 3.6 μg/L within the lower estuary (0.8 km from the Pacific Ocean). These results demonstrate that large quantities of intact and toxic Microcystis cells can withstand passage through hydroelectric installations and transport over distances exceeding 300 km. This finding emphasizes that public health risk assessments should consider the impact of cyanobacterial blooms even when they originate in distant upstream locations within a watershed | ||
65 | Hurst, C.N., P. Wong, S.L. Hallett, R.A. Ray, and J.L. Bartholomew. 2014. Transmission and Persistence of Ceratonova shasta Genotypes in Chinook Salmon. Journal of Parasitology, 100(6):773-777. 5 p. | http://kbmp.net/images/stories/pdf/Doc_library/Hurst_2014_Cs_genotypes_JP.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Hurst, C.N., P. Wong, S.L. Hallett, R.A. Ray, and J.L. Bartholomew | 2014 | Transmission and Persistence of Ceratonova shasta Genotypes in Chinook Salmon | Journal of Parasitology | 5 p | Ceratonova shasta is a myxozoan parasite of salmon and trout transmitted by waterborne actinospores. Based on DNA sequence data and host specificity, 4 distinct parasite genotypes are recognized. Genotypes I and II are common in the lower reaches of the Klamath River, Oregon–California, but only infection by genotype I causes mortality in Chinook salmon. We conducted sentinel fish exposures and determined genotype composition in river water during exposure, and in fish gills, intestine, and tank water post-exposure to determine whether: (1) transmission of parasites having different genotypes is host-specific and (2) all transmitted genotypes persist in the host through to release as waterborne stages. Initial parasite transmission to the fish host appears indiscriminant, since we detected both genotypes I and II in 83.6% of the fish gills sampled. However, only genotype I was detected in fish that succumbed to infection, while both genotypes persisted in fish that survived. Persistence was likely dependent on exposure dose, initial infection type (mixed or single) and infection outcome (mortality or survival). The transmission of both genotypes to a majority of Chinook salmon and the persistence of multiple genotypes raises questions about how infection with mixed genotypes could result in within-host interactions that affect disease severity. | ||
66 | Karuk Tribe of California. 2012. Water Quality Assessment Report 2012. Karuk Tribe Department of Natural Resources, Orleans, CA. 35 p. | http://www.klamathwaterquality.com/documents/2012%20Karuk%20Water%20Quality%20Annual%20Report_FINAL.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Karuk Tribe of California | 2012 | 2012 Water Quality Assessment Report | Orleans, CA | Karuk Tribe Department of Natural Resources | 35 p | ||
67 | Karuk Tribe of California. 2013. Water Quality Assessment Report 2013. Karuk Tribe Department of Natural Resources, Orleans, CA. 33 p. | http://www.klamathwaterquality.com/documents/2013WQAR.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Karuk Tribe of California | 2013 | 2013 Water Quality Assessment Report | Orleans, CA | Karuk Tribe Department of Natural Resources | 33 p | ||
68 | Alexander, J.D., S.L. Hallett, R.W. Stocking, L. Xue, and J.L. Bartholomew. Host and Parasite Populations After a Ten Year Flood: Manayunkia speciosa and Ceratonova (syn Ceratomyxa) shasta in the Klamath River. Northwest Science, 88(3):219-233. 15 p. | http://kbmp.net/images/stories/pdf/Doc_library/Alexander_NWSci_2014_poly.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Alexander, J.D., S.L. Hallett, R.W. Stocking, L. Xue, and J.L. Bartholomew | 2014 | Host and Parasite Populations After a Ten Year Flood: Manayunkia speciosa and Ceratonova (syn Ceratomyxa) shasta in the Klamath River | Northwest Science | 15 p | |||
69 | Office of Environmental Health Hazard Assessment (OEHHA). 2012. Toxicological Summary and Suggested Action Levels to Reduce Potential Adverse Health Effects of Six Cyanotoxins. Final Report -- May 2012. Office of Environmental Health Hazard Assessment California Environmental Protection Agency, Sacramento, California 95812-4010. | http://www.waterboards.ca.gov/water_issues/programs/peer_review/docs/calif_cyanotoxins/cyanotoxins053112.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Office of Environmental Health Hazard Assessment | 2012 | Toxicological Summary and Suggested Action Levels to Reduce Potential Adverse Health Effects of Six Cyanotoxins. Final Report -- May 2012. | Sacramento, California | Office of Environmental Health Hazard Assessment California Environmental Protection Agency | 119 p | ||
70 | M.S. Jordan. 2012. Hydraulic predictors and seasonal distribution of Manayunkia speciosa density in the Klamath River, CA, with implications for ceratomyxosis, a disease of salmon and trout. Masters Thesis submitted to Oregon State University. 91 p. | http://ir.library.oregonstate.edu/xmlui/handle/1957/35869 | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Jordan, M.S. | 2012 | Hydraulic predictors and seasonal distribution of Manayunkia speciosa density in the Klamath River, CA, with implications for ceratomyxosis, a disease of salmon and trout | Oregon State University | 91 p | The freshwater polychaete Manayunkia speciosa was identified as an obligate host of the salmonid parasite Ceratomyxa shasta in 1997, prompting increased research on the small benthic invertebrate. Ceratomyxa shasta infection in fish can cause mortality, and presents a disease risk for both hatchery and wild salmon and trout. Ceratomyxa shasta is endemic to rivers of the Pacific Northwest, and its effects have been particularly well documented in the Klamath River, Oregon and California. One option for managing C. shasta impacts is by decreasing densities of M. speciosa through habitat manipulation, thus decreasing amplification of the parasite. The Klamath River is regulated by irrigation and hydropower dams, thus manipulating the hydrograph to destabilize habitat is a possibility. Decreasing habitat through flow manipulation requires a thorough understanding of the hydraulic environment of polychaete habitat, and how that environment changes with discharge. This thesis proposes an influence diagram of physical variables driving M. speciosa density, and investigates several of them. Samples were collected for enumerating M. speciosa density from nine sites in the Klamath River over 15 months, and seasonal density changes were examined, as were the relationships between density and hydraulic variables (depth, average velocity, substrate size, Reynolds number, Froude number). Density increased directly with depth and inversely with velocity, and was greater on small (silt, sand) and large (boulder, bedrock) substrate relative to medium substrate (gravel, cobble). Density was highest in the summer (July, August, September), and there was evidence that summer densities were influenced by spring discharges through the mechanism of substrate mobilization. Differences in infection prevalence among seasons and habitats were also investigated; however, very low overall incidence of infection limited any conclusions. Based on these results, it is recommended that habitat modeling for management of M. speciosa populations include a habitat stability component that incorporates s whether peak discharge the previous year surpassed a stability threshold. | ||
71 | L.V. Chiaramonte. 2013. Climate Warming Effects on the Life Cycle of the Parasite Ceratomyxa shasta in Salmon of the Pacific Northwest. Masters Thesis submitted to Oregon State University. 121 p. | https://ir.library.oregonstate.edu/xmlui/bitstream/handle/1957/38001/ChiaramonteLucianoV2013.pdf?sequence=1 | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Chiaramonte, L.V. | 2013 | Climate Warming Effects on the Life Cycle of the Parasite Ceratomyxa shasta in Salmon of the Pacific Northwest | Oregon State University | 121 p | Aquatic ecosystems continue to be increasingly affected by climate warming. For salmonids in the Pacific Northwest of North America, increasing temperatures pose tighter thermal constraints on their habitat use as well as aspects of their individual performance, such as disease resistance. This thesis examines the effect of temperature on the phenology of the Ceratomyxa shasta life cycle, the effect of thermal refugia on disease risk in juvenile salmonids in the Klamath River, CA, and the spatial and temporal distribution of C. shasta in the Willamette River, OR. We developed a biological model that predicts an acceleration of the C. shasta life cycle development due to climate shifts in the Klamath River, resulting in more generations per year and earlier seasonal parasite occurrence. We showed that in early summer the Beaver Creek-Klamath River confluence provides juvenile Chinook and coho salmon an area of lower parasite doses and cooler temperatures than the main stem, thus lessening disease risk. By accelerating the development of C. shasta in its hosts, increasing temperatures will result in earlier parasite transmission to juvenile salmonids and a longer season of infectivity. These fish may find disease refuge at cold tributary inflows to the main stem of the Klamath River in early summer, further adding to the benefit of these important thermal habitats. To determine if similar disease patterns occur in other rivers with the parasite, we described spatial and temporal occurrence of C. shasta in the Willamette River. By collecting weekly water sampling at four sites over 28 months we characterize seasonal and annual differences of parasite abundance, which varies with weekly temperature. We also collected samples along the length of the main stem and its tributaries and identified spatial differences in C. shasta spore densities. Identification of spatial and temporal variation of C. shasta in the Willamette River provides a foundation for understanding future patterns of disease occurrence in this river where conservation of anadromous fisheries is also of concern. This thesis identifies likely responses of C. shasta to climate warming in the Klamath River, with useful application to other rivers in the Pacific Northwest. | ||
72 | R.A. Ray. 2013. Modeling Abiotic Influences on Disease Dynamics for the Complex Life Cycle of the Myxozoan Parasite Ceratomyxa shasta. Masters Thesis submitted to Oregon State University. 198 p. | http://ir.library.oregonstate.edu/xmlui/bitstream/handle/1957/43334/RayRobertA2013.pdf?sequence=4 | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Ray, R.A. | 2013 | Modeling Abiotic Influences on Disease Dynamics for the Complex Life Cycle of the Myxozoan Parasite Ceratomyxa shasta | Oregon State University | 198 p | Most parasites and their hosts live in a balance within their environment; however a disease outbreak can occur when either the parasite, host, or environment, are perturbed. Myxozoan parasites are associated with a wide variety of cultured and wild fish populations. Most myxozoans are relatively benign to their vertebrate host; however some cause dramatic population level effects on both cultured and wild fish populations. These parasites have a complex life cycle involving a vertebrate host (fish), an invertebrate host (annelid), and two spore stages (actinospore and myxospore). Interactions between these parasites and their hosts can be strongly influenced by environmental factors, most notably by water temperature and water velocity. Given the complex life cycle of myxozoan parasites and the lack of any chemical treatments or preventatives, controlling infections and disease caused by these parasites is challenging, especially for wild populations. The myxozoan Ceratomyxa shasta is endemic to many of the major rivers of the Pacific Northwest and infects all species of Pacific salmon. In the Klamath River, CA, USA, C. shasta infection is associated with decreased returns of adult Chinook salmon (Oncorhynchus tshawytscha). The goals of this dissertation were to 1) quantify the effect that elevated water temperature has on C. shasta-induced disease severity and mortality rate for both Chinook and coho (O. kitsch) salmon, 2) identify transmission patterns and quantify transmission rates of the actinospore stage to the salmon host, 3) develop an epidemiological model of this host-parasite life cycle and assess the sensitivity of specific parameters that may act as suitable management strategies, and 4) utilize a mixture cure model, an alternative survival analysis method, to quantify the effects water temperature and discharge on the total and rate of C. shasta-induced mortality of both Chinook and coho salmon. I found that, similar to disease progression naïve salmon species (i.e. from waters where C. shasta is absent), elevated water temperature increases the rate and overall mortality for salmon species from river systems where the parasite is endemic. Elevated water temperatures also increase the transmission rate of the actinospore stage to the salmon host. The transmission rate of the actinospore stage to the salmon host was inversely related to water velocity, and I identified a potential velocity threshold of ~0.3m/sec, above which transmission was greatly reduced. From the epidemiological model I sensitivity analyses and identified that reduction of the myxospore transmission rate from the adult salmon to the polychaete host during the winter may be the most effective management action to reduce C. shasta-related disease in the Klamath River. This action could potentially be achieved by increasing discharge during the winter to minimize contact between the polychaete host and myxospore stage. Lastly, I applied the mixture cure models to quantify how the daily survival rates of Chinook and coho salmon change over time after the fish become infected with C. shasta. Although varied in approach, the output from both of the models presented in this dissertation can be used to guide management and conservation actions for fish populations affected by myxozoan parasites. | ||
73 | Bartholomew, J.L. Year Unknown. Annual Report: Long-Term Fish Disease Monitoring Program in the Lower Klamath River; Fiscal Year 2012, 2011 Supplement. Cooperative Agreement R09AC20022, CESU # 3FC810873. Oregon State University. 16 p. | http://microbiology.science.oregonstate.edu/files/micro/Annual_Report_FY12_all.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Bartholomew, J.L. | Annual Report: Long-Term Fish Disease Monitoring Program in the Lower Klamath River; Fiscal Year 2012, 2011 Supplement. Cooperative Agreement R09AC20022, CESU # 3FC810873 | Oregon State University | 16 p | ||||
74 | Bartholomew, J.L. Year Unknown. Klamath River Fish Health Studies: Annual Report, First Reporting Cycle April 01, 2013 - June 30, 2014. GSA Contract #GS09T13BHD0052. Oregon State University. 63 p. | http://microbiology.science.oregonstate.edu/files/micro/KlamathRiverFishHealthStudies_2013_Firstreportingcycle_annualreport_June1_2014.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Bartholomew, J.L. | Klamath River Fish Health Studies: Annual Report, First Reporting Cycle April 01, 2013 - June 30, 2014. GSA Contract #GS09T13BHD0052 | Oregon State University | 63 p | ||||
75 | Bartholomew, J.L. Year Unknown. Klamath River Fish Health Studies: Annual Report, Second Reporting Cycle April 01, 2014 - June 30, 2015. GSA Contract #GS09T13BHD0052. Oregon State University. 49 p. | http://microbiology.science.oregonstate.edu/files/micro/KlamathRiverFishHealthStudies_2014_Secondreportingcycle_annualreport_May2015_final.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Bartholomew, J.L. | Klamath River Fish Health Studies: Annual Report, Second Reporting Cycle April 01, 2014 - June 30, 2015. GSA Contract #GS09T13BHD0052 | Oregon State University | 49 p | ||||
76 | PacifiCorp. 2015. Study Plan Klamath Hydroelectric Project Interim Measure 11 Study Activities for 2015, May 29, 2015. | http://www.pacificorp.com/content/dam/pacificorp/doc/Energy_Sources/Hydro/Hydro_Licensing/Klamath_River/2015-IM11-WQStudyPlnF-5-29-15.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | PacifiCorp | 2015 | Study Plan Klamath Hydroelectric Project Interim Measure 11 Study Activities for 2015 | Portland OR | PacifiCorp | 16 p | ||
77 | Kann J, Bowater L, Raverty, S., Johnson G, and Bowman C. 2013. Microcystin bioaccumulation and histopathology in Klamath River salmonids; 2010 study results. Technical Memorandum. Prepared by Aquatic Ecosystem Sciences LLC for the Karuk Tribe Department of Natural Resources, Orleans California. 52 p. | http://kbmp.net/images/stories/pdf/Doc_library/2010_Karuk_Microcystin_Salmon_Report_6-5-13_F.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Kann J, Bowater L, Raverty, S., Johnson G, and Bowman C. | 2013 | Microcystin bioaccumulation and histopathology in Klamath River salmonids; 2010 study results | Prepared by Aquatic Ecosystem Sciences LLC for the Karuk Tribe Department of Natural Resources, Orleans, California | 52 p | |||
78 | Asarian, E. and J. Kann. 2013. Synthesis of Continuous Water Quality Data for the Lower and Middle Klamath River, 2001-2011. Prepared by Kier Associates and Aquatic Ecosystem Sciences for the Klamath Basin Tribal Water Quality Work Group. 50 p. + appendices. | http://www.klamathwaterquality.com/documents/Klamath_2001_2011_sonde_rpt_20130502_final.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Asarian, E. and J. Kann | 2013 | Synthesis of Continuous Water Quality Data for the Lower and Middle Klamath River, 2001-2011 | Prepared by Kier Associates and Aquatic Ecosystem Sciences for the Klamath Basin Tribal Water Quality Work Group | 50 p. + appendices | |||
79 | Asarian, E. and J. Kann. 2014. Justification for Revisions Proposed in the Karuk Tribe’s 2014 Water Quality Control Plan. Prepared by Riverbend Sciences and Aquatic Ecosystem Sciences for Karuk Tribe of California Department of Natural Resources, Orleans, California. 19 p. + appendices. | http://kbmp.net/images/stories/pdf/Doc_library/Karuk_WQCP_Justification_final20140220.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Asarian, E. and J. Kann | 2014 | Justification for Revisions Proposed in the Karuk Tribe’s 2014 Water Quality Control Plan | Prepared by Riverbend Sciences and Aquatic Ecosystem Sciences for Karuk Tribe of California Department of Natural Resources, Orleans, California | 19 p. + appendices | |||
80 | Asarian, J.E., Y. Pan, N.D. Gillett, and J. Kann. 2015. Periphyton Assemblages and Associated Environmental Conditions in the Klamath River 2004-2013. Prepared by Riverbend Sciences, Portland State University, and Aquatic Ecosystem Sciences LLC. for the Klamath Basin Tribal Water Quality Work Group. 48p. + appendices. | http://www.klamathwaterquality.com/documents/KlamPeriphyton_Phase2_20150819final.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Asarian, J.E., Y. Pan, N.D. Gillett, and J. Kann | 2015 | Periphyton Assemblages and Associated Environmental Conditions in the Klamath River 2004-2013 | Prepared by Riverbend Sciences, Portland State University, and Aquatic Ecosystem Sciences LLC. for the Klamath Basin Tribal Water Quality Work Group | 48p. + appendices | |||
81 | Hoopa Valley Tribal Environmental Protection Agency (HVTEPA). 2013. Water Quality Monitoring by the Hoopa Tribal Environmental Protection Agency 2008-2012. Prepared by the Hoopa Tribal Environmental Protection Agency in cooperation with Kier Associates. 21p. | http://www.klamathwaterquality.com/documents/hoopa_2013_WQreport20082012_final.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Hoopa Valley Tribal Environmental Protection Agency | 2013 | Water Quality Monitoring by the Hoopa Tribal Environmental Protection Agency 2008-2012 | Prepared by the Hoopa Tribal Environmental Protection Agency in cooperation with Kier Associates | 21 p | |||
82 | Genzoli, L., R.O. Hall, J.E. Asarian, and J. Kann. 2015. Variation and Environmental Association of Ecosystem Metabolism in the Lower Klamath River: 2007-2014. Prepared by the University of Wyoming, Riverbend Sciences, and Aquatic Ecosystem Sciences LLC. for the Klamath Tribal Water Quality Consortium. 44p. + appendices. | http://www.klamathwaterquality.com/documents/Genzoli_2015KlamathMetabolism_final20151215.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Genzoli, L., R.O. Hall, J.E. Asarian, and J. Kann | 2015 | Variation and Environmental Association of Ecosystem Metabolism in the Lower Klamath River: 2007-2014 | Prepared by the University of Wyoming, Riverbend Sciences, and Aquatic Ecosystem Sciences LLC. for the Klamath Tribal Water Quality Consortium. | 44p. + appendices. | |||
83 | Deas, M.L., S.K. Tanaka, E. Limanto, and E. Miao. 2012. Pilot Testing of Environmentally-Safe Algaecide on Copco Reservoir Water – 2011 Study Results. Prepared for PacifiCorp. December 10, 2012. 46 pp. | http://www.pacificorp.com/content/dam/pacificorp/doc/Energy_Sources/Hydro/Hydro_Licensing/Klamath_River/Algaecide2011Rpt(12-11-12)F.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Deas, M.L., S.K. Tanaka, E. Limanto, and E. Miao | 2012 | Pilot Testing of Environmentally-Safe Algaecide on Copco Reservoir Water – 2011 Study Results | Prepared for PacifiCorp | 46 p | |||
84 | Miao, E. and M. Deas. 2014. Assessment of an Intake Barrier for Water Quality Control at Iron Gate Reservoir – 2013. Final Technical Report. Prepared for PacifiCorp, Portland, Oregon. Prepared by Watercourse Engineering, Inc., Davis, California. April 2014. | http://www.pacificorp.com/content/dam/pacificorp/doc/Energy_Sources/Hydro/Hydro_Licensing/Klamath_River/2013IG-Intake-Barrier-TechRpt(4-25-14)F.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Watercourse Engineering, Inc. | 2014 | Assessment of an Intake Barrier for Water Quality Control at Iron Gate Reservoir – 2013. Final Technical Report. | Prepared for PacifiCorp | ||||
85 | CH2MHill. 2015. Interim Measure 11 Study of Nutrient Reduction Methods: Jar Test Results and Summary Report. Prepared for PacifiCorp by CH2MHill, Portland, OR. | http://www.pacificorp.com/content/dam/pacificorp/doc/Energy_Sources/Hydro/Hydro_Licensing/Klamath_River/2015IM11-Act7-Rpt(3-12-15)F.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | CH2MHill | 2015 | Interim Measure 11 Study of Nutrient Reduction Methods: Jar Test Results and Summary Report | Prepared for PacifiCorp by CH2MHill | ||||
86 | Watercourse Engineering, Inc. (Watercourse). 2013a. 2012 Localized Treatment of Copco Cove in Copco Reservoir Using Environmentally Safe Algaecide. Prepared for PacifiCorp Energy, Portland OR. July. 57 pp. | http://www.pacificorp.com/content/dam/pacificorp/doc/Energy_Sources/Hydro/Hydro_Licensing/Klamath_River/2012%20Final%20Algaecide%20Tech%20Report%20(7-24-13)-P8.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Watercourse Engineering, Inc. | 2013 | 2012 Localized Treatment of Copco Cove in Copco Reservoir Using Environmentally Safe Algaecide | Portland OR | Prepared for PacifiCorp Energy | 57 p | ||
87 | Watercourse Engineering, Inc. (Watercourse). 2013b. Evaluation of Particulate Organic Matter Removal from Klamath River Source Water Using Stormwater Treatment Technology, 2012. Prepared for PacifiCorp Energy, Portland OR. April. | http://www.pacificorp.com/content/dam/pacificorp/doc/Energy_Sources/Hydro/Hydro_Licensing/Klamath_River/OM%20Separator%202012%20Report%20(July%2015%202013).pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Watercourse Engineering, Inc. | 2013 | Evaluation of Particulate Organic Matter Removal from Klamath River Source Water Using Stormwater Treatment Technology, 2012 | Portland OR | Prepared for PacifiCorp Energy | |||
88 | Watercourse Engineering, Inc. (Watercourse). 2014a. 2013 Localized Treatment of Long Gulch Cove in Iron Gate Reservoir Using Environmentally Safe Algaecide. Prepared for PacifiCorp Energy, Portland OR. July. 65 pp. | http://www.pacificorp.com/content/dam/pacificorp/doc/Energy_Sources/Hydro/Hydro_Licensing/Klamath_River/2013CoveAlgalMgt-TechRpt(7-2-14)F.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Watercourse Engineering, Inc. | 2014 | 2013 Localized Treatment of Long Gulch Cove in Iron Gate Reservoir Using Environmentally Safe Algaecide | Portland OR | Prepared for PacifiCorp Energy | 65 p | ||
89 | Watercourse Engineering, Inc. (Watercourse). 2014c. Evaluation of Particulate Organic Matter Removal from Klamath River Source Water Using Stormwater Treatment Technology, 2013. Prepared for PacifiCorp Energy, Portland OR. June. | http://www.pacificorp.com/content/dam/pacificorp/doc/Energy_Sources/Hydro/Hydro_Licensing/Klamath_River/OM%20Separator%202012%20Report%20(July%2015%202013).pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Watercourse Engineering, Inc. | 2014 | Evaluation of Particulate Organic Matter Removal from Klamath River Source Water Using Stormwater Treatment Technology, 2013 | Portland OR | Prepared for PacifiCorp Energy | |||
90 | Watercourse Engineering, Inc. (Watercourse). 2015. 2014 Localized Treatment of Long Gulch Cove in Iron Gate Reservoir Using Hydrogen Peroxide Based Algaecide. Prepared for PacifiCorp Energy, Portland OR. July. 35 pp. | http://www.pacificorp.com/content/dam/pacificorp/doc/Energy_Sources/Hydro/Hydro_Licensing/Klamath_River/2014AlgaecideRpt(4-16-14)F.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Watercourse Engineering, Inc. | 2015 | 2014 Localized Treatment of Long Gulch Cove in Iron Gate Reservoir Using Hydrogen Peroxide Based Algaecide | Portland OR | Prepared for PacifiCorp Energy | 35 p | ||
91 | Asarian, J.E., Y. Pan, N.D. Gillett, and J. Kann. 2014. Spatial and Temporal Variation of Periphyton Assemblages in the Klamath River, 2004-2012. Prepared by Kier Associates, Portland State University, and Aquatic Ecosystem Sciences LLC. for the Klamath Basin Tribal Water Quality Work Group. 50p. + appendices. | http://www.klamathwaterquality.com/documents/KlamPeriphyton_Phase1Final_20140623.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Asarian, J.E., Y. Pan, N.D. Gillett, and J. Kann | 2014 | Spatial and Temporal Variation of Periphyton Assemblages in the Klamath River, 2004-2012 | Prepared for: Klamath Basin Tribal Water Quality Work Group | 50 p + appendices | |||
92 | Som, N.A., D.H. Goodman, R.W. Perry, and T.B. Hardy. 2015. Habitat suitability criteria via parametric distributions: estimation, model selection and uncertainty. River Research Applications, (Early View), http://dx.doi.org/10.1002/rra.2900 | http://onlinelibrary.wiley.com/doi/10.1002/rra.2900/abstract;jsessionid=0F035E6B865E67A04F7D0B68514CF2BE.f02t03 | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Som, N.A., D.H. Goodman, R.W. Perry, and T.B. Hardy | 2015 | Habitat suitability criteria via parametric distributions: estimation, model selection and uncertainty | River Research Applications | Previous methods for constructing univariate habitat suitability criteria (HSC) curves have ranged from professional judgement to kernel-smoothed density functions or combinations thereof. We present a new method of generating HSC curves that applies probability density functions as the mathematical representation of the curves. Compared with previous approaches, benefits of our method include (1) estimation of probability density function parameters directly from raw data, (2) quantitative methods for selecting among several candidate probability density functions, and (3) concise methods for expressing estimation uncertainty in the HSC curves. We demonstrate our method with a thorough example using data collected on the depth of water used by juvenile Chinook salmon (Oncorhynchus tschawytscha) in the Klamath River of northern California and southern Oregon. All R code needed to implement our example is provided in the appendix. Published 2015. This article is a U.S. Government work and is in the public domain in the USA. | habitat suitability criteria; maximum likelihood; probability density function; bootstrap | ||
93 | Gillett, N.D., Y. Pan, J.E. Asarian, and J. Kann. 2016. Spatial and temporal variability of river periphyton below a hypereutrophic lake and a series of dams. Science of the Total Environment 541: 1382–1392. | https://www.researchgate.net/profile/Yangdong_Pan/publication/283013280_Spatial_and_temporal_variability_of_river_periphyton_below_a_hypereutrophic_lake_and_a_series_of_dams/links/5643935f08aef646e6c6b913.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Gillett, N.D., Y. Pan, J. Eli Asarian, and J. Kann | 2016 | Spatial and Temporal Variability of River Periphyton below a Hypereutrophic Lake and a Series of Dams | Science of The Total Environment | 11 p | |||
94 | Strange, J.S. 2014. Memo to Klamath Fish Health Assessment Team: Update on flow forecasts for the lower Klamath River and adult salmon fish kill risk for 2014. Stillwater Sciences. 8 p. | http://kbmp.net/images/stories/pdf/KFHAT/Doc/Klamath%20flow%20and%20fish%20kill%20risk%20update%20Aug%2015th%202014.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Strange, J.S. | 2014 | Update on flow forecasts for the lower Klamath River and adult salmon fish kill risk for 2014 | Stillwater Sciences | 8 p | |||
95 | Strange, J.S. 2015. Memo to Klamath Fish Health Assessment Team: Scientific Rationale and Evidence for Elevated Background Levels of Ich in 2015. Stillwater Sciences. 10 p. | http://kbmp.net/images/stories/pdf/Doc_library/Background_Levels_of_Ich_2015_FINAL.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Strange, J.S. | 2015 | Scientific Rationale and Evidence for Elevated Background Levels of Ich in 2015 | Stillwater Sciences | 10 p | |||
96 | Strange, J.S. 2015. Memo to Klamath Fish Health Assessment Team: Update on flow forecasts for the lower Klamath River and adult salmon fish kill risk for 2015. Stillwater Sciences. 12 p. | http://kbmp.net/images/stories/pdf/KFHAT/Doc/Klamath%20flow%20and%20fish%20kill%20risk%20update%20July%2015%202015.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Strange, J.S. | 2015 | Update on flow forecasts for the lower Klamath River and adult salmon fish kill risk for 2015 | Stillwater Sciences | 12 p | |||
97 | Kann, J. and C. Bowman. 2012. Middle Klamath River Toxic Cyanobacteria Trends, 2010. Aquatic Ecosystem Sciences LLC. and Karuk Tribe Department of Natural Resources. 42 pp. | http://www.klamathwaterquality.com/documents/Karuk_Public_Health_Cyano_2010_Report_2_9_12_final.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Kann, J. and C. Bowman | 2012 | Middle Klamath River Toxic Cyanobacteria Trends, 2010 | Technical Memorandum prepared for the Karuk Tribe Natural Resources Department, Orleans, CA | 42 p | |||
98 | Kann, J. 2014. Evaluation of Cyanobacteria and Cyanobacterial toxins with reference to Selection of Water Quality Criteria for the Karuk Tribe of California. Technical Memorandum prepared for the Karuk Tribe Natural Resources Department, Orleans, CA. June 2014. 40 p. | http://kbmp.net/images/stories/pdf/Doc_library/Karuk_Tribe_Cyano_Guidelines_June_4_2014.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Kann, J | 2014 | Evaluation of Cyanobacteria and Cyanobacterial toxins with reference to Selection of Water Quality Criteria for the Karuk Tribe of California | Technical Memorandum prepared for the Karuk Tribe Natural Resources Department, Orleans, CA | 40 p | |||
99 | Strange, J.S. 2012. Migration Strategies of Adult Chinook Salmon Runs in Response to Diverse Environmental Conditions in the Klamath River Basin, Transactions of the American Fisheries Society, 141:6, 1622-1636. 16 p. | http://kbmp.net/images/stories/pdf/Doc_library/Strange_Klamath_Chinook_migration_TAFS_2012.pdf | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Strange, J.S. | 2012 | Migration Strategies of Adult Chinook Salmon Runs in Response to Diverse Environmental Conditions in the Klamath River Basin | Transactions of the American Fisheries Society | 16 p | Biotelemetry and body temperature records of 130 adult Chinook salmon Oncorhynchus tshawytscha tagged over multiple years were used to investigate migration behaviors in response to diverse riverine conditions within the context of run timing strategies in a single river system. Four distinct runs were identified: Klamath.Trinity spring run, Trinity summer run, Klamath fall run, and Trinity fall run. Only the timing of Klamath.Trinity spring-run and Trinity fall-run Chinook salmon tended to prevent fish exposure to adversely high river temperatures. Faster migration rates reduced the accumulation of thermal units regardless of river temperature, especially at migration rates .10 km/d. Behavioral thermoregulation was minimal for all run groups (8% of all migrants), typically brief (<12 h) during summer months at nonnatal tributary confluences. Spring-run fish migrating on the descending limb of the snowmelt peak experienced increased accumulated thermal units due to slow migration rates, resulting in more elevated relative disease risk with lower apparent migration success than rapidly migrating summer-run fish. Klamath fall-run fish held extensively in the lower Klamath River regardless of date or river condition, resulting in the highest cumulative thermal experience of all run groups with moderate thermal stress. Trinity fall-run fish experienced minimal thermal stress due to their later run timing. Results demonstrate the need to comprehensively investigate fish migrations in order to detect potentially subtle but important context-sensitive dynamics between migration behaviors and environmental conditions that can impact the viability of salmon populations. This study�fs findings highlight concerns regarding global warming and vulnerability runs of salmon that migrate in the late spring and early fall in the absence of adaptive shifts in run timing or appropriate human intervention. Conversely, these results also demonstrate the unexpected ability of adult Chinook salmon to migrate successfully through surprisingly warm temperatures and endure acute thermal stress if sufficiently large volumes of cold water await them at their destination. | ||
100 | Ray, R.A., R.W. Perry, N.A. Som, and J.L. Bartholomew. 2014. Using cure models for analyzing the influence of pathogens on salmon survival. Transactions of the American Fisheries Society, 143(2): 387-398. 12 p. | http://www.tandfonline.com/doi/abs/10.1080/00028487.2013.862183 | 2/29/2016 | Randy Turner, Klamath Basin Monitoring Program | Ray, R.A., R.W. Perry, N.A. Som, and J.L. Bartholomew | 2014 | Using cure models for analyzing the influence of pathogens on salmon survival | Transactions of the American Fisheries Society | 12 p | Parasites and pathogens influence the size and stability of wildlife populations, yet many population models ignore the population-level effects of pathogens. Standard survival analysis methods (e.g., accelerated failure time models) are used to assess how survival rates are influenced by disease. However, they assume that each individual is equally susceptible and will eventually experience the event of interest; this assumption is not typically satisfied with regard to pathogens of wildlife populations. In contrast, mixture cure models, which comprise logistic regression and survival analysis components, allow for different covariates to be entered into each part of the model and provide better predictions of survival when a fraction of the population is expected to survive a disease outbreak. We fitted mixture cure models to the host–pathogen dynamics of Chinook Salmon Oncorhynchus tshawytscha and Coho Salmon O. kisutch and the myxozoan parasite Ceratomyxa shasta. Total parasite concentration, water temperature, and discharge were used as covariates to predict the observed parasite-induced mortality in juvenile salmonids collected as part of a long-term monitoring program in the Klamath River, California. The mixture cure models predicted the observed total mortality well, but some of the variability in observed mortality rates was not captured by the models. Parasite concentration and water temperature were positively associated with total mortality and the mortality rate of both Chinook Salmon and Coho Salmon. Discharge was positively associated with total mortality for both species but only affected the mortality rate for Coho Salmon. The mixture cure models provide insights into how daily survival rates change over time in Chinook Salmon and Coho Salmon after they become infected with C. shasta. | ||