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Metamodeling meeting agenda
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meeting link: https://huji.zoom.us/my/barak.raveh
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meta-modeling googledrive: https://drive.google.com/drive/folders/1nuR-oBgArPXNxTKzsW_2Mkf5u57sq5BZ?usp=sharing
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Review some papers, plan for your projects, etc.
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Time in SFTime in ShanghaiTime in JerusalemDiscussion leaderTopic (15 - 20 min)
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04/20/202221:0004/21/202212:0004/21/202207:00lipingCatalina meeting 2019
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05/04/202221:0005/05/202212:0005/05/202207:00canceled
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05/18/202221:0005/19/202212:0005/19/202207:00Barakmetamodeling of GSIS
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06/01/202221:0006/02/202212:0006/02/202207:00jingjing(1) Glucose sensing (metabolism) and amplification (cAMP mediated example GLP-1).
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06/15/202221:0006/16/202212:0006/16/202207:00canceled
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06/29/202221:0006/30/202212:0006/30/202207:00jihui & tracyAccuracy and precision in metamodeling paper in slides
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07/13/202221:0007/14/202212:0007/14/202207:00XianniCompartment model (PBCC)
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07/27/202221:0007/28/202212:0007/28/202207:00canceled
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08/10/202221:0008/11/202212:0008/11/202207:00canceled
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08/24/202221:0008/25/202212:0008/25/202207:00canceled
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09/07/202221:0009/08/202212:0009/08/202207:00YuBing(2) Regulation proinsulin synthesis, quality control and folding ER.
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09/21/202221:0009/22/202212:0009/22/202207:00canceled
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10/05/202221:0010/06/202212:0010/06/202207:00canceled
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10/19/202221:0010/20/202212:0010/20/202207:00Jinyu(3) Proinsulin processing to insulin and C-peptide in Golgi and secretory vesicles.
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11/02/202221:0011/03/202212:0011/03/202207:00canceled
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11/16/202221:0011/17/202212:0011/17/202207:00tracy(4) Insulin secretory vesicle trafficking, docking and exocytosis.
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11/30/202221:0012/01/202212:0012/01/202207:00weimincryo-et
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12/14/202221:0012/15/202212:0012/15/202207:00canceled
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12/28/202221:0012/29/202212:0012/29/202207:00canceled
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01/11/202321:0001/12/202312:0001/12/202307:00Angdi(5) Recycling misfolded proteins by proteasome and autophagy
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01/25/202321:0001/26/202312:0001/26/202307:00canceled
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02/08/202321:0002/09/202312:0002/09/202307:00lipingThe neural basis of psychedelic action
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02/22/202321:0002/23/202312:0002/23/202307:00xianni
(6) Membrane phospholipid biosynthesis at the mitochondrial endoplasmic reticulum membranes (MAM) and distribution through cell.
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03/08/202321:0003/09/202312:0003/09/202307:00Barakmetamodeling of NPC
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03/22/202321:0003/23/202312:0003/23/202307:00Xianni
(7) Regulation of intracellular Ca flux ER to Mitochondria (MAM) required for oxidative phosphorylation, extracellular to cytosol (exocytosis).
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04/05/202321:0004/06/202312:0004/06/202307:00canceled
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04/19/202321:0004/20/202312:0004/20/202307:00canceled
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05/03/202321:0005/04/202312:0005/04/202307:00canceled
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05/17/202321:0005/18/202312:0005/18/202307:00BarakMetamodeling of NPC
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05/31/202321:0006/01/202312:0006/01/202307:00Barak
(8) Global islet insulin secretion (concept recruitment populations beta cells at increasing glucose concentration, beta cell hub).
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06/14/202321:0006/15/202312:0006/15/202307:00TracyUncertainty in metamodeling
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06/28/202321:0006/29/202312:0006/29/202307:00Reshef
(9) Global pancreatic islet insulin secretion and interaction with hepatocytes, pulsatile insulin secretion.
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07/12/202321:0007/13/202312:0007/13/202307:00canceled
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07/26/202321:0007/27/202312:0007/27/202307:00canceled
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08/09/202322:0008/10/202313:0008/10/202308:00JinyuA minimum whole-cell metamodel to study beta-cell biology
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09/06/202322:0009/07/202313:0009/07/202308:00
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10/04/202322:0010/05/202313:0010/05/202308:00
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11/01/202322:0011/02/202313:0011/02/202308:00
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11/29/202322:0011/30/202313:0011/30/202308:00
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12/27/202322:0012/28/202313:0012/28/202308:00
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01/24/202422:0001/25/202413:0001/25/202408:00
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02/21/202422:0002/22/202413:0002/22/202408:00
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03/20/202422:0003/21/202413:0003/21/202408:00
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04/17/202422:0004/18/202413:0004/18/202408:00
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05/15/202422:0005/16/202413:0005/16/202408:00
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06/12/202422:0006/13/202413:0006/13/202408:00
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07/10/202422:0007/11/202413:0007/11/202408:00
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08/07/202422:0008/08/202413:0008/08/202408:00
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Technical discussions- how to include new people (accessibility ~= impact), tutorial
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Flim in ihuman
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01/13/202121:0001/14/202112:0001/14/202107:00BarakIslet metamodeling + remaining challenges methods wise
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01/27/202121:0001/28/202112:0001/28/202107:00JihuiCovert's paper about whole cell modeling
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02/10/202121:0002/11/202112:0002/11/202107:00canceled
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02/24/202121:0002/25/202112:0002/25/202107:00TracyEmbed BD simulations to BMM
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03/10/202121:0003/11/202112:0003/11/202107:00LipingWhy and how to represent model uncertainty (both for input and surrogate models)
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03/24/202121:0003/25/202112:0003/25/202107:00LipingEstimating model uncertainty using Kalman Filter
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04/07/202121:0004/08/202112:0004/08/202107:00canceled
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04/21/202121:0004/22/202112:0004/22/202107:00XianniDevelopment of a spatiotemporal compartment model of the pancreatic β-cell
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05/05/202121:0005/06/202112:0005/06/202107:00TracyImprove Bayesian metamodeling
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05/19/202121:0005/20/202112:0005/20/202107:00AngdiA stochastic grid model to represent mitochondria dynamics in pancreatic β-cells
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06/02/202121:0006/03/202112:0006/03/202107:00canceled
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06/16/202121:0006/17/202112:0006/17/202107:00canceled
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06/30/202121:0007/01/202112:0007/01/202107:00allCatching up and planning
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07/14/202121:0007/15/202112:0007/15/202107:00canceled
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07/28/202121:0007/29/202112:0007/29/202107:00WenLinFlim
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08/11/202121:0008/12/202112:0008/12/202107:00TracyModel uncertainty and couplers
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08/25/202121:0008/26/202112:0008/26/202107:00Xianniβ-cells Different spieces
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09/08/202121:0009/09/202112:0009/09/202107:00ReshefIslet model and how can we simplify it
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09/22/202121:0009/23/202112:0009/23/202107:00TanmoyReview of Covert paper
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10/06/202121:0010/07/202112:0010/07/202107:00canceled