RefEx sample annotations for CAGE mouse PRJDB1100 (FANTOM5)
 Share
The version of the browser you are using is no longer supported. Please upgrade to a supported browser.Dismiss

 
View only
 
 
ABCDEFGHI
1
FANTOM5 Original OrderAlphabetical Uniq Order by developmental, primary cellsRefEx Tissue Class10RefEx Tissue Class40Cell ClassTissue ClassDescription (RefEx refined)FANTOM5 URLDescription (FANTOM5 Original)
2
104286primary cellsTSt-4/DLL1 feeder cellshttp://fantom.gsc.riken.jp/5/sstar/FF:13003-139B6tpm.TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B6
3
103286primary cellsTSt-4/DLL1 feeder cellshttp://fantom.gsc.riken.jp/5/sstar/FF:12987-138I8tpm.TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I8
4
102286primary cellsTSt-4/DLL1 feeder cellshttp://fantom.gsc.riken.jp/5/sstar/FF:12971-138H1tpm.TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H1
5
333285primary cellstrophoblast stem cell line Rybp differentiation, day00http://fantom.gsc.riken.jp/5/sstar/FF:13290-142G5tpm.trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G5
6
332284primary cellstrophoblast stem cell line R1AB differentiation, day00http://fantom.gsc.riken.jp/5/sstar/FF:13283-142F7tpm.trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F7
7
331283primary cellstrophoblast stem cell line B1 differentiation, day00http://fantom.gsc.riken.jp/5/sstar/FF:13297-142H3tpm.trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H3
8
107282primary cells
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr
http://fantom.gsc.riken.jp/5/sstar/FF:13369-143G3
tpm.Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G3
9
106282primary cells
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr
http://fantom.gsc.riken.jp/5/sstar/FF:13368-143G2
tpm.Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G2
10
105282primary cells
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr
http://fantom.gsc.riken.jp/5/sstar/FF:13367-143G1
tpm.Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G1
11
293281primary cellsstem cell (cKit+ Sca1- lineage-) KSLhttp://fantom.gsc.riken.jp/5/sstar/FF:12127-128D3tpm.stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D3
12
292281primary cellsstem cell (cKit+ Sca1- lineage-) KSLhttp://fantom.gsc.riken.jp/5/sstar/FF:12124-128C9tpm.stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C9
13
291281primary cellsstem cell (cKit+ Sca1- lineage-) KSLhttp://fantom.gsc.riken.jp/5/sstar/FF:12121-128C6tpm.stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C6
14
100280primary cells
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr (000hC6)
http://fantom.gsc.riken.jp/5/sstar/FF:12582-133I8
tpm.ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I8
15
99280primary cells
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr (000hC5)
http://fantom.gsc.riken.jp/5/sstar/FF:12460-132E3
tpm.ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E3
16
98280primary cells
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr (000hC4)
http://fantom.gsc.riken.jp/5/sstar/FF:12338-130I7
tpm.ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I7
17
101279primary cellsCD4+CD25-CD44- naive conventional T cells (C57BL_6J)http://fantom.gsc.riken.jp/5/sstar/FF:12157-128G6tpm.Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G6
18
249278primary cellsneurospheres - sympathetic neuron derivedhttp://fantom.gsc.riken.jp/5/sstar/FF:11806-124D6tpm.neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D6
19
248278primary cellsneurospheres - sympathetic neuron derivedhttp://fantom.gsc.riken.jp/5/sstar/FF:11805-124D5tpm.neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D5
20
247278primary cellsneurospheres - sympathetic neuron derivedhttp://fantom.gsc.riken.jp/5/sstar/FF:11804-124D4tpm.neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D4
21
246277primary cellsneurospheres - parasympathetic neuron derivedhttp://fantom.gsc.riken.jp/5/sstar/FF:11809-124D9tpm.neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D9
22
245277primary cellsneurospheres - parasympathetic neuron derivedhttp://fantom.gsc.riken.jp/5/sstar/FF:11808-124D8tpm.neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D8
23
244277primary cellsneurospheres - parasympathetic neuron derivedhttp://fantom.gsc.riken.jp/5/sstar/FF:11807-124D7tpm.neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D7
24
243276primary cellsneurospheres - enteric neuron derivedhttp://fantom.gsc.riken.jp/5/sstar/FF:11812-124E3tpm.neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E3
25
242276primary cellsneurospheres - enteric neuron derivedhttp://fantom.gsc.riken.jp/5/sstar/FF:11811-124E2tpm.neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E2
26
241276primary cellsneurospheres - enteric neuron derivedhttp://fantom.gsc.riken.jp/5/sstar/FF:11810-124E1tpm.neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E1
27
90275primary cellsMouse Schwannhttp://fantom.gsc.riken.jp/5/sstar/FF:11746-123F9tpm.Mouse Schwann, donor2.CNhs12573.11746-123F9
28
89275primary cellsMouse Schwannhttp://fantom.gsc.riken.jp/5/sstar/FF:11728-123D9tpm.Mouse Schwann, donor1.CNhs12507.11728-123D9
29
88274primary cellsMouse Neurons - ventral spinal cordhttp://fantom.gsc.riken.jp/5/sstar/FF:11648-122E1tpm.Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E1
30
87274primary cellsMouse Neurons - ventral spinal cordhttp://fantom.gsc.riken.jp/5/sstar/FF:11743-123F6tpm.Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F6
31
86274primary cellsMouse Neurons - ventral spinal cordhttp://fantom.gsc.riken.jp/5/sstar/FF:11725-123D6tpm.Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D6
32
85273primary cellsMouse Neurons - substantia nigrahttp://fantom.gsc.riken.jp/5/sstar/FF:11770-123I6tpm.Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I6
33
84273primary cellsMouse Neurons - substantia nigrahttp://fantom.gsc.riken.jp/5/sstar/FF:11490-119E5tpm.Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E5
34
83273primary cellsMouse Neurons - substantia nigrahttp://fantom.gsc.riken.jp/5/sstar/FF:11489-119E4tpm.Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E4
35
82272primary cellsMouse Neurons - striatalhttp://fantom.gsc.riken.jp/5/sstar/FF:11646-122D8tpm.Mouse Neurons - striatal, donor3.CNhs12111.11646-122D8
36
81272primary cellsMouse Neurons - striatalhttp://fantom.gsc.riken.jp/5/sstar/FF:11741-123F4tpm.Mouse Neurons - striatal, donor2.CNhs12360.11741-123F4
37
80272primary cellsMouse Neurons - striatalhttp://fantom.gsc.riken.jp/5/sstar/FF:11723-123D4tpm.Mouse Neurons - striatal, donor1.CNhs12134.11723-123D4
38
79271primary cellsMouse Neurons - raphehttp://fantom.gsc.riken.jp/5/sstar/FF:11645-122D7tpm.Mouse Neurons - raphe, donor3.CNhs12619.11645-122D7
39
78271primary cellsMouse Neurons - raphehttp://fantom.gsc.riken.jp/5/sstar/FF:11740-123F3tpm.Mouse Neurons - raphe, donor2.CNhs12636.11740-123F3
40
77271primary cellsMouse Neurons - raphehttp://fantom.gsc.riken.jp/5/sstar/FF:11722-123D3tpm.Mouse Neurons - raphe, donor1.CNhs12631.11722-123D3
41
76270primary cellsMouse Neurons - hippocampalhttp://fantom.gsc.riken.jp/5/sstar/FF:11644-122D6tpm.Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D6
42
75270primary cellsMouse Neurons - hippocampalhttp://fantom.gsc.riken.jp/5/sstar/FF:11739-123F2tpm.Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F2
43
74270primary cellsMouse Neurons - hippocampalhttp://fantom.gsc.riken.jp/5/sstar/FF:11721-123D2tpm.Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D2
44
73269primary cellsMouse Neurons - dorsal spinal cordhttp://fantom.gsc.riken.jp/5/sstar/FF:11643-122D5tpm.Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D5
45
72269primary cellsMouse Neurons - dorsal spinal cordhttp://fantom.gsc.riken.jp/5/sstar/FF:11738-123F1tpm.Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F1
46
71268primary cellsMouse Neurons - corticalhttp://fantom.gsc.riken.jp/5/sstar/FF:11647-122D9tpm.Mouse Neurons - cortical, donor3.CNhs12112.11647-122D9
47
70268primary cellsMouse Neurons - corticalhttp://fantom.gsc.riken.jp/5/sstar/FF:11742-123F5tpm.Mouse Neurons - cortical, donor2.CNhs11947.11742-123F5
48
69268primary cellsMouse Neurons - corticalhttp://fantom.gsc.riken.jp/5/sstar/FF:11724-123D5tpm.Mouse Neurons - cortical, donor1.CNhs12025.11724-123D5
49
68267primary cellsMouse Microgliahttp://fantom.gsc.riken.jp/5/sstar/FF:11736-123E8tpm.Mouse Microglia, donor2.CNhs12634.11736-123E8
50
67267primary cellsMouse Microgliahttp://fantom.gsc.riken.jp/5/sstar/FF:11718-123C8tpm.Mouse Microglia, donor1.CNhs12629.11718-123C8
51
66266primary cellsMouse Mesenchymal stem cells - bone marrow derivedhttp://fantom.gsc.riken.jp/5/sstar/FF:11640-122D2tpm.Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D2
52
65266primary cellsMouse Mesenchymal stem cells - bone marrow derivedhttp://fantom.gsc.riken.jp/5/sstar/FF:11735-123E7tpm.Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E7
53
64266primary cellsMouse Mesenchymal stem cells - bone marrow derivedhttp://fantom.gsc.riken.jp/5/sstar/FF:11717-123C7tpm.Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C7
54
63265primary cellsMouse Meningeal cellshttp://fantom.gsc.riken.jp/5/sstar/FF:11639-122D1tpm.Mouse Meningeal cells, donor3.CNhs12109.11639-122D1
55
62265primary cellsMouse Meningeal cellshttp://fantom.gsc.riken.jp/5/sstar/FF:11716-123C6tpm.Mouse Meningeal cells, donor1.CNhs12132.11716-123C6
56
96264primary cellsMouse hepatocytehttp://fantom.gsc.riken.jp/5/sstar/FF:11824-124F6tpm.Mouse hepatocyte, donor8.CNhs13091.11824-124F6
57
95264primary cellsMouse hepatocytehttp://fantom.gsc.riken.jp/5/sstar/FF:11822-124F4tpm.Mouse hepatocyte, donor6.CNhs13090.11822-124F4
58
94264primary cellsMouse hepatocytehttp://fantom.gsc.riken.jp/5/sstar/FF:11637-122C8tpm.Mouse hepatocyte, donor3.CNhs12615.11637-122C8
59
93264primary cellsMouse hepatocytehttp://fantom.gsc.riken.jp/5/sstar/FF:11714-123C4tpm.Mouse hepatocyte, donor1.CNhs13078.11714-123C4
60
92263primary cellsMouse hepatic Stellate Cells (lipocyte)http://fantom.gsc.riken.jp/5/sstar/FF:11825-124F7tpm.Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F7
61
91262primary cellsMouse hepatic Sinusoidal Endothelial Cellshttp://fantom.gsc.riken.jp/5/sstar/FF:11830-124G3tpm.Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G3
62
61261primary cellsMouse Granule cellshttp://fantom.gsc.riken.jp/5/sstar/FF:11636-122C7tpm.Mouse Granule cells, donor3.CNhs12108.11636-122C7
63
60261primary cellsMouse Granule cellshttp://fantom.gsc.riken.jp/5/sstar/FF:11731-123E3tpm.Mouse Granule cells, donor2.CNhs12357.11731-123E3
64
59261primary cellsMouse Granule cellshttp://fantom.gsc.riken.jp/5/sstar/FF:11713-123C3tpm.Mouse Granule cells, donor1.CNhs12131.11713-123C3
65
55260primary cellsMouse CD8+ T Cellshttp://fantom.gsc.riken.jp/5/sstar/FF:11855-125A1tpm.Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A1
66
54259primary cellsMouse CD4+ T Cellshttp://fantom.gsc.riken.jp/5/sstar/FF:11854-124I9tpm.Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I9
67
53258primary cellsMouse CD19+ B Cellshttp://fantom.gsc.riken.jp/5/sstar/FF:11856-125A2tpm.Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A2
68
58257primary cellsMouse Cardiac Myocyteshttp://fantom.gsc.riken.jp/5/sstar/FF:11634-122C5tpm.Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C5
69
57257primary cellsMouse Cardiac Myocyteshttp://fantom.gsc.riken.jp/5/sstar/FF:11729-123E1tpm.Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E1
70
56257primary cellsMouse Cardiac Myocyteshttp://fantom.gsc.riken.jp/5/sstar/FF:11711-123C1tpm.Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C1
71
52256primary cellsMouse Astrocyteshttp://fantom.gsc.riken.jp/5/sstar/FF:11633-122C4tpm.Mouse Astrocytes, donor3.CNhs12107.11633-122C4
72
51256primary cellsMouse Astrocyteshttp://fantom.gsc.riken.jp/5/sstar/FF:11552-120C4tpm.Mouse Astrocytes, donor2.CNhs12078.11552-120C4
73
50255primary cellsMouse Astrocytes - hippocampushttp://fantom.gsc.riken.jp/5/sstar/FF:11551-120C3tpm.Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C3
74
49255primary cellsMouse Astrocytes - hippocampushttp://fantom.gsc.riken.jp/5/sstar/FF:11709-123B8tpm.Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B8
75
48254primary cellsMouse Astrocytes - cerebellarhttp://fantom.gsc.riken.jp/5/sstar/FF:11550-120C2tpm.Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C2
76
47254primary cellsMouse Astrocytes - cerebellarhttp://fantom.gsc.riken.jp/5/sstar/FF:11708-123B7tpm.Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B7
77
46253primary cellsMouse Aortic Smooth Muscle cellshttp://fantom.gsc.riken.jp/5/sstar/FF:11299-117B3tpm.Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B3
78
45252primary cellsMouse Aortic Smooth Muscle cells - differentiatedhttp://fantom.gsc.riken.jp/5/sstar/FF:11485-119D9tpm.Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D9
79
44252primary cellsMouse Aortic Smooth Muscle cells - differentiatedhttp://fantom.gsc.riken.jp/5/sstar/FF:11484-119D8tpm.Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D8
80
43251primary cells
MC1+Gr1+ myeloid-derived suppressor cells control (0128 PBS)
http://fantom.gsc.riken.jp/5/sstar/FF:12164-128H4tpm.MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H4
81
42251primary cells
MC1+Gr1+ myeloid-derived suppressor cells control (0127 PBS)
http://fantom.gsc.riken.jp/5/sstar/FF:12162-128H2tpm.MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H2
82
41251primary cellsMC1+Gr1+ myeloid-derived suppressor cells control (4,5,6PBS)http://fantom.gsc.riken.jp/5/sstar/FF:12160-128G9tpm.MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G9
83
40250primary cellsMC1+Gr1+ myeloid-derived suppressor cells cancer (0128 3LL)http://fantom.gsc.riken.jp/5/sstar/FF:12163-128H3tpm.MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H3
84
39250primary cellsMC1+Gr1+ myeloid-derived suppressor cells cancer (0127 3LL)http://fantom.gsc.riken.jp/5/sstar/FF:12161-128H1tpm.MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H1
85
38250primary cells
MC1+Gr1+ myeloid-derived suppressor cells cancer (10,11,12 3LL)
http://fantom.gsc.riken.jp/5/sstar/FF:12159-128G8
tpm.MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G8
86
234249primary cellsmacrophage, bone marrow derivedhttp://fantom.gsc.riken.jp/5/sstar/FF:3632-171A1tpm.macrophage, bone marrow derived, pool2.CNhs11532.3632-171A1
87
233249primary cellsmacrophage, bone marrow derivedhttp://fantom.gsc.riken.jp/5/sstar/FF:3560-170A1tpm.macrophage, bone marrow derived, pool1.CNhs11457.3560-170A1
88
37248primary cellsLgr5 positive intestinal stem cellshttp://fantom.gsc.riken.jp/5/sstar/FF:12230-129F7tpm.Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F7
89
36248primary cellsLgr5 positive intestinal stem cellshttp://fantom.gsc.riken.jp/5/sstar/FF:12229-129F6tpm.Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F6
90
35248primary cellsLgr5 positive intestinal stem cellshttp://fantom.gsc.riken.jp/5/sstar/FF:12228-129F5tpm.Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F5
91
34247primary cells
J2E erythroblastic leukemia response to erythropoietin, 00hr00min
http://fantom.gsc.riken.jp/5/sstar/FF:13195-141E9
tpm.J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E9
92
33247primary cells
J2E erythroblastic leukemia response to erythropoietin, 00hr00min
http://fantom.gsc.riken.jp/5/sstar/FF:13129-140G6
tpm.J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G6
93
32247primary cells
J2E erythroblastic leukemia response to erythropoietin, 00hr00min
http://fantom.gsc.riken.jp/5/sstar/FF:13063-139I3
tpm.J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I3
94
159246primary cellsgranulocyte macrophage progenitor GMPhttp://fantom.gsc.riken.jp/5/sstar/FF:12129-128D5tpm.granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D5
95
158246primary cellsgranulocyte macrophage progenitor GMPhttp://fantom.gsc.riken.jp/5/sstar/FF:12126-128D2tpm.granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D2
96
157246primary cellsgranulocyte macrophage progenitor GMPhttp://fantom.gsc.riken.jp/5/sstar/FF:12123-128C8tpm.granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C8
97
28245primary cellsGP2+ M cellhttp://fantom.gsc.riken.jp/5/sstar/FF:11847-124I2tpm.GP2+ M cell, pool3.CNhs13240.11847-124I2
98
27245primary cellsGP2+ M cellhttp://fantom.gsc.riken.jp/5/sstar/FF:11846-124I1tpm.GP2+ M cell, pool2.CNhs13231.11846-124I1
99
26245primary cellsGP2+ M cellhttp://fantom.gsc.riken.jp/5/sstar/FF:11845-124H9tpm.GP2+ M cell, pool1.CNhs13228.11845-124H9
100
23244primary cellsEBF KO HPCs induced to T cell, 00hr00minhttp://fantom.gsc.riken.jp/5/sstar/FF:12988-138I9tpm.EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I9
Loading...
 
 
 
141110 ver.
 
 
Main menu