ABCDEFGHIJKLMNORSTUVWXYZAAABACADAEAF
1
SeqIDLibrary_IDLibrary_name
Sample-prep_person
Sample-prep_urlPrimary_taxa
SeqSubmissionDate
SeqReceiptDate
TissueMoleculePlatformSequencerLengthBriefDescSRA_IDExperimentProduct_urlRead1FileLocationRead1URLRead1FastQCRead2FileLocationRead2URLRead2FastQC
2
s_4_sequenceYOJI15yoji1O_kisutch5/22/09/Volumes/web/nightingales/O_kisutch/s_4_sequenceYOJI1.txt.gzhttp://owl.fish.washington.edu/nightingales/O_kisutch/s_4_sequenceYOJI1.txt.gz
3
s_1_1_sequenceO_keta5/23/09liverIlluminaPE100bert/Volumes/web/nightingales/O_keta/s_1_1_sequence.txt.gzhttp://owl.fish.washington.edu/nightingales/O_keta/s_1_1_sequence.txt.gz
/Volumes/web/nightingales/O_keta/s_1_2_sequence.txt.gz
http://owl.fish.washington.edu/nightingales/O_keta/s_1_2_sequence.txt.gz
4
s_2_1_sequenceO_keta5/23/09liverIlluminaPE100bert/Volumes/web/nightingales/O_keta/s_2_1_sequence.txt.gzhttp://owl.fish.washington.edu/nightingales/O_keta/s_2_1_sequence.txt.gz
/Volumes/web/nightingales/O_keta/s_2_2_sequence.txt.gz
http://owl.fish.washington.edu/nightingales/O_keta/s_2_2_sequence.txt.gz
5
s_3_1_sequenceO_keta5/23/09testesIlluminaPE100bert/Volumes/web/nightingales/O_keta/s_3_1_sequence.txt.gzhttp://owl.fish.washington.edu/nightingales/O_keta/s_3_1_sequence.txt.gz
/Volumes/web/nightingales/O_keta/s_3_2_sequence.txt.gz
http://owl.fish.washington.edu/nightingales/O_keta/s_3_2_sequence.txt.gz
6
s_4_1_sequenceO_keta5/23/09testesIlluminaPE100bert/Volumes/web/nightingales/O_keta/s_4_1_sequence.txt.gzhttp://owl.fish.washington.edu/nightingales/O_keta/s_4_1_sequence.txt.gz
/Volumes/web/nightingales/O_keta/s_4_2_sequence.txt.gz
http://owl.fish.washington.edu/nightingales/O_keta/s_4_2_sequence.txt.gz
7
s_5_1_sequenceO_keta5/23/09liverIlluminaPE100ernie/Volumes/web/nightingales/O_keta/s_5_1_sequence.txt.gzhttp://owl.fish.washington.edu/nightingales/O_keta/s_5_1_sequence.txt.gz
/Volumes/web/nightingales/O_keta/s_5_2_sequence.txt.gz
http://owl.fish.washington.edu/nightingales/O_keta/s_5_2_sequence.txt.gz
8
s_6_1_sequenceO_keta5/23/09liverIlluminaPE100ernie/Volumes/web/nightingales/O_keta/s_6_1_sequence.txt.gzhttp://owl.fish.washington.edu/nightingales/O_keta/s_6_1_sequence.txt.gz
/Volumes/web/nightingales/O_keta/s_6_2_sequence.txt.gz
http://owl.fish.washington.edu/nightingales/O_keta/s_6_2_sequence.txt.gz
9
s_7_1_sequenceO_keta5/23/09testesIlluminaPE100ernie/Volumes/web/nightingales/O_keta/s_7_1_sequence.txt.gzhttp://owl.fish.washington.edu/nightingales/O_keta/s_7_1_sequence.txt.gz
/Volumes/web/nightingales/O_keta/s_7_2_sequence.txt.gz
http://owl.fish.washington.edu/nightingales/O_keta/s_7_2_sequence.txt.gz
10
s_4_sequenceYOJI26yoji2O_kisutch7/2/09/Volumes/web/nightingales/O_kisutch/s_4_sequenceYOJI2.txt.gzhttp://owl.fish.washington.edu/nightingales/O_kisutch/s_4_sequenceYOJI2.txt.gz
11
F5BZJAM0120SR01SJW
http://onsnetwork.org/kubu4/2009/10/27/mrna-isolation-herring-gonadovary-rna-from-20091023/
C_pallasii10/27/0911/19/09liverRNA454SRX022719pool from all locations
Development of Genomic Resources for Pacific Herring through Targeted Transcriptome Pyrosequencing
/Volumes/web/nightingales/C_pallasii/F5BZJAM01.sffhttp://owl.fish.washington.edu/nightingales/C_pallasii/F5BZJAM01.sff
12
F5BZJAM0220SR02SJW
http://onsnetwork.org/kubu4/2009/10/27/mrna-isolation-herring-gonadovary-rna-from-20091023/
C_pallasii10/27/0911/19/09gonadRNA454SRX082042pool from all locations
Development of Genomic Resources for Pacific Herring through Targeted Transcriptome Pyrosequencing
/Volumes/web/nightingales/C_pallasii/F5BZJAM02.sffhttp://owl.fish.washington.edu/nightingales/C_pallasii/F5BZJAM02.sff
13
F5ORNKL0121SR01SJW
http://onsnetwork.org/kubu4/2009/10/27/mrna-isolation-herring-gonadovary-rna-from-20091023/
C_pallasii10/27/0911/19/09liverRNA454SRX022719pool from all locations
Development of Genomic Resources for Pacific Herring through Targeted Transcriptome Pyrosequencing
/Volumes/web/nightingales/C_pallasii/F5ORNKL01.sffhttp://owl.fish.washington.edu/nightingales/C_pallasii/F5ORNKL01.sff
14
F5ORNKL0221SR02SJW
http://onsnetwork.org/kubu4/2009/10/27/mrna-isolation-herring-gonadovary-rna-from-20091023/
C_pallasii10/27/0911/19/09gonadRNA454SRX082042pool from all locations
Development of Genomic Resources for Pacific Herring through Targeted Transcriptome Pyrosequencing
/Volumes/web/nightingales/C_pallasii/F5ORNKL02.sffhttp://owl.fish.washington.edu/nightingales/C_pallasii/F5ORNKL02.sff
15
solid0078_20091105_BB39BB3MGhttp://genefish.wikispaces.com/Mac%27s+NotebookC_gigas11/11/09ctenidiaRNASOLiDSE25Big Beef Creek
http://www.sciencedirect.com/science/article/pii/S1744117X11001018
/Volumes/web/nightingales/C_gigas/solid0078_20091105_BB3.tar.gzhttp://owl.fish.washington.edu/nightingales/C_gigas/solid0078_20091105_BB3.tar.gz
16
solid0078_20091105_DH38DH3MGhttp://genefish.wikispaces.com/Mac%27s+NotebookC_gigas11/11/09ctenidiaRNASOLiDSE25Drayton Harbor
http://www.sciencedirect.com/science/article/pii/S1744117X11001018
/Volumes/web/nightingales/C_gigas/solid0078_20091105_DH3.tar.gzhttp://owl.fish.washington.edu/nightingales/C_gigas/solid0078_20091105_DH3.tar.gz
17
solid0078_20091105_RbbertsLab_DH2_F3
7DH2MGhttp://genefish.wikispaces.com/Mac%27s+NotebookC_gigas11/11/09ctenidiaRNASOLiDSE25Drayton Harbor
/Volumes/web/nightingales/C_gigas/solid0078_20091105_RbbertsLab_DH2_F3.tar.gz
http://owl.fish.washington.edu/nightingales/C_gigas/solid0078_20091105_RbbertsLab_DH2_F3.tar.gz
18
solid0078_20091105_RbbertsLab_GE_F3
14GECABC_gigas11/11/09ctenidiaRNASOLiDSE25oshvExposed
/Volumes/web/nightingales/C_gigas/solid0078_20091105_RbbertsLab_GE_F3.tar.gz
http://owl.fish.washington.edu/nightingales/C_gigas/solid0078_20091105_RbbertsLab_GE_F3.tar.gz
19
solid0078_20091105_RbbertsLab_RBC1_F3
11RBC 1S_namaycush11/12/09red blood cellsRNASOLiDSE25Poly_ICPoly I:C
/Volumes/web/nightingales/S_maycush/solid0078_20091105_RbbertsLab_RBC1_F3.tar.gz
http://owl.fish.washington.edu/nightingales/S_maycush/solid0078_20091105_RbbertsLab_RBC1_F3.tar.gz
20
solid0078_20091105_RbbertsLab_RBC2_F3
12RBC 2S_namaycush11/12/09red blood cellsRNASOLiDSE25ControlControl
/Volumes/web/nightingales/S_maycush/solid0078_20091105_RbbertsLab_RBC2_F3.tar.gz
http://owl.fish.washington.edu/nightingales/S_maycush/solid0078_20091105_RbbertsLab_RBC2_F3.tar.gz
21
solid0078_20091105_RbbertsLab_RBC3_F3
13RBC 3S_namaycush11/12/09red blood cellsRNASOLiDSE25Poly_ICPoly I:C
/Volumes/web/nightingales/S_maycush/solid0078_20091105_RbbertsLab_RBC3_F3.tar.gz
http://owl.fish.washington.edu/nightingales/S_maycush/solid0078_20091105_RbbertsLab_RBC3_F3.tar.gz
22
solid0078_20091105_RbbertsLab_RBC4_F3
10RBC 4S_namaycush11/12/09red blood cellsRNASOLiDSE25ControlControl
/Volumes/web/nightingales/S_maycush/solid0078_20091105_RbbertsLab_RBC4_F3.tar.gz
http://owl.fish.washington.edu/nightingales/S_maycush/solid0078_20091105_RbbertsLab_RBC4_F3.tar.gz
23
solid0078_20100107_MD_Roberts_Hao_64A_71A_64B_Roberts_GC_F3
15GCCABC_gigas1/7/10larvaeSOLiDSE25ControlControl
/Volumes/web/nightingales/C_gigas/solid0078_20100107_MD_Roberts_Hao_64A_71A_64B_Roberts_GC_F3.tar.gz
http://owl.fish.washington.edu/nightingales/C_gigas/solid0078_20100107_MD_Roberts_Hao_64A_71A_64B_Roberts_GC_F3.tar.gz
24
SeebRobertsTranscriptomics_20100303_Sam_2L_F3
162LC_pallasii3/3/10liverRNASOLiDSE252L HKOD09
/Volumes/web/nightingales/C_pallasii/SeebRobertsTranscriptomics_20100303_Sam_2L_F3.tar.gz
http://owl.fish.washington.edu/nightingales/C_pallasii/SeebRobertsTranscriptomics_20100303_Sam_2L_F3.tar.gz
25
SeebRobertsTranscriptomics_20100303_Sam_3L_F3
183LC_pallasii3/3/10liverRNASOLiDSE254L HTOG09
/Volumes/web/nightingales/C_pallasii/SeebRobertsTranscriptomics_20100303_Sam_3L_F3.tar.gz
http://owl.fish.washington.edu/nightingales/C_pallasii/SeebRobertsTranscriptomics_20100303_Sam_3L_F3.tar.gz
26
SeebRobertsTranscriptomics_20100303_Sam_4L_F3
174LC_pallasii3/3/10liverRNASOLiDSE253L HSITK09
/Volumes/web/nightingales/C_pallasii/SeebRobertsTranscriptomics_20100303_Sam_4L_F3.tar.gz
http://owl.fish.washington.edu/nightingales/C_pallasii/SeebRobertsTranscriptomics_20100303_Sam_4L_F3.tar.gz
27
SeebRobertsTranscriptomics_20100303_Sam_6L_F3
196LC_pallasii3/3/10liverRNASOLiDSE256L HPWS09
/Volumes/web/nightingales/C_pallasii/SeebRobertsTranscriptomics_20100303_Sam_6L_F3.tar.gz
http://owl.fish.washington.edu/nightingales/C_pallasii/SeebRobertsTranscriptomics_20100303_Sam_6L_F3.tar.gz
28
Roberts_20100712_HPW509_F3
221 G/O HPWS09C_pallasii7/12/10ovaryRNASOLiDSE25
/Volumes/web/nightingales/C_pallasii/Roberts_20100712_HPW509_F3.tar.gz
http://owl.fish.washington.edu/nightingales/C_pallasii/Roberts_20100712_HPW509_F3.tar.gz
29
Roberts_20100712_CC_F328CCH_cracherodii7/12/10digestive glandRNASOLiDSE25
/Volumes/web/nightingales/H_cracherodii/Roberts_20100712_CC_F3.tar.gz
http://owl.fish.washington.edu/nightingales/H_cracherodii/Roberts_20100712_CC_F3.tar.gz
30
Roberts_20100712_CE_F329CEH_cracherodii7/12/10digestive glandRNASOLiDSE25
/Volumes/web/nightingales/H_cracherodii/Roberts_20100712_CE_F3.tar.gz
http://owl.fish.washington.edu/nightingales/H_cracherodii/Roberts_20100712_CE_F3.tar.gz
31
Roberts_20100712_CT_F323CTP_flavescens7/12/10RNASOLiDSE25
/Volumes/web/nightingales/P_flavescens/Roberts_20100712_CT_F3.tar.gz
http://owl.fish.washington.edu/nightingales/P_flavescens/Roberts_20100712_CT_F3.tar.gz
32
Roberts_20100712_PQ_F324PQP_flavescens7/12/10RNASOLiDSE25
/Volumes/web/nightingales/P_flavescens/Roberts_20100712_PQ_F3.tar.gz
http://owl.fish.washington.edu/nightingales/P_flavescens/Roberts_20100712_PQ_F3.tar.gz
33
Roberts_20100712_WB_F325WBP_flavescens7/12/10RNASOLiDSE25
/Volumes/web/nightingales/P_flavescens/Roberts_20100712_WB_F3.tar.gz
http://owl.fish.washington.edu/nightingales/P_flavescens/Roberts_20100712_WB_F3.tar.gz
34
Roberts_20100712_Lean_F3
26LeanS_namaycush7/12/10muscleRNASOLiDSE25
/Volumes/web/nightingales/S_maycush/Roberts_20100712_Lean_F3.tar.gz
http://owl.fish.washington.edu/nightingales/S_maycush/Roberts_20100712_Lean_F3.tar.gz
35
Roberts_20100712_Sisco_F3
27SiscoS_namaycush7/12/10muscleRNASOLiDSE25
/Volumes/web/nightingales/S_maycush/Roberts_20100712_Sisco_F3.tar.gz
http://owl.fish.washington.edu/nightingales/S_maycush/Roberts_20100712_Sisco_F3.tar.gz
36
solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_SB_METH
34SB meth C.gigasC_gigas4/19/11gillDNASOLiDSE25
/Volumes/web/nightingales/C_gigas/solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_SB_METH.tar.gz
http://owl.fish.washington.edu/nightingales/C_gigas/solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_SB_METH.tar.gz
37
solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_SB_UNMETH
32SB unmeth C.gigasC_gigas4/19/11gillDNASOLiDSE25https://img.skitch.com/20111020-p2guuhtqgff481139jikgdyn46.png
/Volumes/web/nightingales/C_gigas/solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_SB_UNMETH.tar.gz
http://owl.fish.washington.edu/nightingales/C_gigas/solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_SB_UNMETH.tar.gz
38
solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_SC
30SCH_cracherodii4/19/11digestive glandRNASOLiDSE25Abalone Dg Exp1
/Volumes/web/nightingales/H_cracherodii/solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_SC.tar.gz
http://owl.fish.washington.edu/nightingales/H_cracherodii/solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_SC.tar.gz
39
solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_SE
31SEH_cracherodii4/19/11digestive glandRNASOLiDSE25Abalone Dg Exp1
/Volumes/web/nightingales/H_cracherodii/solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_SE.tar.gz
http://owl.fish.washington.edu/nightingales/H_cracherodii/solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_SE.tar.gz
40
solid0078_20110412_BARN_BX
37BXM_mercenaria4/19/11gillRNASOLiDSE25
/Volumes/web/nightingales/M_merceria/solid0078_20110412_BARN_BX.tar.gz
http://owl.fish.washington.edu/nightingales/M_merceria/solid0078_20110412_BARN_BX.tar.gz
41
solid0078_20110412_MASH_MX
36MAM_mercenaria4/19/11gillRNASOLiDSE25
/Volumes/web/nightingales/M_merceria/solid0078_20110412_MASH_MX.tar.gz
http://owl.fish.washington.edu/nightingales/M_merceria/solid0078_20110412_MASH_MX.tar.gz
42
solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_19106VT
39Vt STRAINV_tubiashii4/19/11DNASOLiDSE25
/Volumes/web/nightingales/V_tubiashii/solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_19106VT.tar.gz
http://owl.fish.washington.edu/nightingales/V_tubiashii/solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_19106VT.tar.gz
43
solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_RE22
38Vt RE22V_tubiashii4/19/11DNASOLiDSE25
/Volumes/web/nightingales/V_tubiashii/solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_RE22.tar.gz
http://owl.fish.washington.edu/nightingales/V_tubiashii/solid0078_20110412_FRAG_BC_WHITE_WHITE_F3_RE22.tar.gz
44
136AllS_namaycush6/29/11muscleDNA454/Volumes/web/nightingales/S_maycush/136All.tar.gzhttp://owl.fish.washington.edu/nightingales/S_maycush/136All.tar.gz
45
137AllS_namaycush6/29/11muscleDNA454/Volumes/web/nightingales/S_maycush/137All.tar.gzhttp://owl.fish.washington.edu/nightingales/S_maycush/137All.tar.gz
46
filtered_1000ppm_ACTTGA_L002
1000ppmDMSee entry on Sept 9th, 2011)
V_philippinarum
9/7/20119/28/11larvaeRNAIlluminaSE36
replicate pooling of ~30,000 manila clam larvae RNA raised at 1000ppm
Underlying impact of ocean acidification on Manila clam (Ruditapes philippinarum) larvae revealed through RNA-Seq analysis
/Volumes/web/nightingales/V_philippirum/filtered_1000ppm_ACTTGA_L002_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/V_philippirum/filtered_1000ppm_ACTTGA_L002_R1.fastq.gz
47
filtered_400ppm_CAGATC_L001
400ppmDMSee entry on Sept 9th, 2011)
V_philippinarum
9/7/20119/28/11larvaeRNAIlluminaSE36
replicate pooling of ~30,000 manila clam larvae RNA raised at 1000ppm
Underlying impact of ocean acidification on Manila clam (Ruditapes philippinarum) larvae revealed through RNA-Seq analysis
/Volumes/web/nightingales/V_philippirum/filtered_400ppm_CAGATC_L001_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/V_philippirum/filtered_400ppm_CAGATC_L001_R1.fastq.gz
48
filtered_P_Ab_Air_CAGATC_L001
45P_Ab_AirFriedman
H_kamtschatkana
9/8/1111/21/11larvaeRNAIlluminaSE36SRA057107400ppm;PNW genomics
Genomic resource development for shellfish of conservation concern
/Volumes/web/nightingales/H_kamtschatka/filtered_P_Ab_Air_CAGATC_L001_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/H_kamtschatka/filtered_P_Ab_Air_CAGATC_L001_R1.fastq.gz
49
filtered_P_Ab_CO2_ACTTGA_L001
46P_Ab_CO2Friedman
H_kamtschatkana
9/8/1111/21/11larvaeRNAIlluminaSE36SRA0571071000ppm;PNW genomics
Genomic resource development for shellfish of conservation concern
/Volumes/web/nightingales/H_kamtschatka/filtered_P_Ab_CO2_ACTTGA_L001_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/H_kamtschatka/filtered_P_Ab_CO2_ACTTGA_L001_R1.fastq.gz
50
filtered_2000_NoIndex_L007
2000O_lurida1/4/20121/25/12larvaeRNAIlluminaSE36
/Volumes/web/nightingales/O_lurida/filtered_2000_NoIndex_L007_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_2000_NoIndex_L007_R1.fastq.gz
51
filtered_400_NoIndex_L006400O_lurida1/4/20121/25/12larvaeRNAIlluminaSE36
/Volumes/web/nightingales/O_lurida/filtered_400_NoIndex_L006_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_400_NoIndex_L006_R1.fastq.gz
52
filtered_BSseqGill_L00347
SB MBD meth (bisulfite)
C_gigas1/30/12gillDNAIlluminaSE36BS-seqSRX327373
Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc
/Volumes/web/nightingales/C_gigas/filtered_BSseqGill_L003_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/C_gigas/filtered_BSseqGill_L003_R1.fastq.gz
53
QPX_ATCC_10C_CGTACG_L001
55QPX ATCC 10CLexie, SJW
http://onsnetwork.org/kubu4/2012/07/10/chloroform-clean-up-lexies-qpx-rna-from-20110504/
QPX7/11/127/31/12RNAIlluminaSE36SRX197332
Development of Genomic Resources for a thraustochytrid Pathogen and Investigation of Temperature Influences on Gene Expression
http://owl.fish.washington.edu/nightingales/QPX/QPX_ATCC_10C_CGTACG_L001_R2.fastq.gz
/Volumes/web/nightingales/QPX/QPX_ATCC_10C_CGTACG_L001_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/QPX/QPX_ATCC_10C_CGTACG_L001_R1.fastq.gz
54
QPX_ATCC_RT_GAGTGG_L001
56QPX ATCC RTLexie, SJW
http://onsnetwork.org/kubu4/2012/07/10/chloroform-clean-up-lexies-qpx-rna-from-20110504/
QPX7/11/127/31/12RNAIlluminaSE36SRX197332
Development of Genomic Resources for a thraustochytrid Pathogen and Investigation of Temperature Influences on Gene Expression
http://owl.fish.washington.edu/nightingales/QPX/QPX_ATCC_RT_GAGTGG_L001_R2.fastq.gz
/Volumes/web/nightingales/QPX/QPX_ATCC_RT_GAGTGG_L001_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/QPX/QPX_ATCC_RT_GAGTGG_L001_R1.fastq.gz
55
QPX_DNA_GTGAAA_L00154QPX DNALexie, SJW
http://onsnetwork.org/kubu4/2012/07/10/chloroform-clean-up-lexies-qpx-rna-from-20110504/
QPX7/11/127/31/12DNAIlluminaSE36SRX197335
Development of Genomic Resources for a thraustochytrid Pathogen and Investigation of Temperature Influences on Gene Expression
http://owl.fish.washington.edu/nightingales/QPX/QPX_DNA_GTGAAA_L001_R2.fastq.gz
/Volumes/web/nightingales/QPX/QPX_D_GTGAAA_L001_R1.fastq.gzhttp://owl.fish.washington.edu/nightingales/QPX/QPX_D_GTGAAA_L001_R1.fastq.gz
56
filtered_NWS_ACTGAT_L003
59NWSH_cracherodii8/7/12digestive glandRNAIlluminaSE36Friedman
/Volumes/web/nightingales/H_cracherodii/filtered_NWS_ACTGAT_L003_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/H_cracherodii/filtered_NWS_ACTGAT_L003_R1.fastq.gz
57
filtered_WSO_ATTCCT_L00357WSOH_cracherodii8/7/12digestive glandRNAIlluminaSE36Friedman
/Volumes/web/nightingales/H_cracherodii/filtered_WSO_ATTCCT_L003_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/H_cracherodii/filtered_WSO_ATTCCT_L003_R1.fastq.gz
58
filtered_WSP_CCGTCC_L003
58WS + PH_cracherodii8/7/12digestive glandRNAIlluminaSE36Friedman
/Volumes/web/nightingales/H_cracherodii/filtered_WSP_CCGTCC_L003_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/H_cracherodii/filtered_WSP_CCGTCC_L003_R1.fastq.gz
59
filtered_1000_GTGAAA_L004
521000FriedmanO_lurida8/14/12larvaeRNAIlluminaSE361000ppm CO2Friedman
/Volumes/web/nightingales/O_lurida/filtered_1600_GTGGCC_L004_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_1600_GTGGCC_L004_R1.fastq.gz
60
filtered_1600_GTGGCC_L004
531600FriedmanO_lurida8/14/12larvaeRNAIlluminaSE361600ppm CO2Friedman
/Volumes/web/nightingales/O_lurida/filtered_2200_GTTTCG_L004_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_2200_GTTTCG_L004_R1.fastq.gz
61
filtered_2200_GTTTCG_L004
502200FriedmanO_lurida8/14/12larvaeRNAIlluminaSE362200ppm CO2Friedman
/Volumes/web/nightingales/O_lurida/filtered_400_GTCCGC_L004_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_400_GTCCGC_L004_R1.fastq.gz
62
filtered_400_GTCCGC_L00451400FriedmanO_lurida8/14/12larvaeRNAIlluminaSE36400ppm CO2Friedman
/Volumes/web/nightingales/O_lurida/filtered_1000_GTGAAA_L004_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_1000_GTGAAA_L004_R1.fastq.gz
63
filtered_106A_Female_Mix_GATCAG_L007
60106A Female MixO_lurida8/21/12gonadRNAIlluminaSE36Friedman
/Volumes/web/nightingales/O_lurida/filtered_106A_Female_Mix_GATCAG_L007_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_106A_Female_Mix_GATCAG_L007_R1.fastq.gz
64
filtered_106A_Male_Mix_TAGCTT_L007
61106A Male MixO_lurida8/21/12gonadRNAIlluminaSE36Friedman
/Volumes/web/nightingales/O_lurida/filtered_106A_Male_Mix_TAGCTT_L007_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_106A_Male_Mix_TAGCTT_L007_R1.fastq.gz
65
filtered_108A_Female_Mix_GGCTAC_L007
62108A Female MixO_lurida8/21/12gonadRNAIlluminaSE36Friedman
/Volumes/web/nightingales/O_lurida/filtered_108A_Female_Mix_GGCTAC_L007_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_108A_Female_Mix_GGCTAC_L007_R1.fastq.gz
66
filtered_108A_Male_Mix_AGTCAA_L007
63108A Male MixO_lurida8/21/12gonadRNAIlluminaSE36Friedman
/Volumes/web/nightingales/O_lurida/filtered_108A_Male_Mix_AGTCAA_L007_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_108A_Male_Mix_AGTCAA_L007_R1.fastq.gz
67
filtered_LTL_NPL32_CAGATC_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_NPL32_CAGATC_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_NPL32_CAGATC_L005_R1.fastq.gz
68
filtered_LTL_NPL34_ACTTGA_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_NPL34_ACTTGA_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_NPL34_ACTTGA_L005_R1.fastq.gz
69
filtered_LTL_NPL44_GTGAAA_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_NPL44_GTGAAA_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_NPL44_GTGAAA_L005_R1.fastq.gz
70
filtered_LTL_NPL46_GATCAG_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_NPL46_GATCAG_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_NPL46_GATCAG_L005_R1.fastq.gz
71
filtered_LTL_NPL56_TAGCTT_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_NPL56_TAGCTT_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_NPL56_TAGCTT_L005_R1.fastq.gz
72
filtered_LTL_NPL61_GGCTAC_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_NPL61_GGCTAC_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_NPL61_GGCTAC_L005_R1.fastq.gz
73
filtered_LTL_NPS15_GAGTGG_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_NPS15_GAGTGG_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_NPS15_GAGTGG_L005_R1.fastq.gz
74
filtered_LTL_NPS24_ACTGAT_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_NPS24_ACTGAT_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_NPS24_ACTGAT_L005_R1.fastq.gz
75
filtered_LTL_NPS29_ATTCCT_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_NPS29_ATTCCT_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_NPS29_ATTCCT_L005_R1.fastq.gz
76
filtered_LTL_NPS36_GTGGCC_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_NPS36_GTGGCC_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_NPS36_GTGGCC_L005_R1.fastq.gz
77
filtered_LTL_NPS50_GTTTCG_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_NPS50_GTTTCG_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_NPS50_GTTTCG_L005_R1.fastq.gz
78
filtered_LTL_NPS58_CGTACG_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_NPS58_CGTACG_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_NPS58_CGTACG_L005_R1.fastq.gz
79
filtered_LTL_PL20_ATCACG_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_PL20_ATCACG_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_PL20_ATCACG_L005_R1.fastq.gz
80
filtered_LTL_PL31_CGATGT_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_PL31_CGATGT_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_PL31_CGATGT_L005_R1.fastq.gz
81
filtered_LTL_PL43_GCCAAT_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_PL43_GCCAAT_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_PL43_GCCAAT_L005_R1.fastq.gz
82
filtered_LTL_PL55_TTAGGC_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_PL55_TTAGGC_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_PL55_TTAGGC_L005_R1.fastq.gz
83
filtered_LTL_PL59_TGACCA_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_PL59_TGACCA_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_PL59_TGACCA_L005_R1.fastq.gz
84
filtered_LTL_PL62_ACAGTG_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_PL62_ACAGTG_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_PL62_ACAGTG_L005_R1.fastq.gz
85
filtered_LTL_PS13_CTTGTA_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_PS13_CTTGTA_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_PS13_CTTGTA_L005_R1.fastq.gz
86
filtered_LTL_PS16_AGTCAA_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_PS16_AGTCAA_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_PS16_AGTCAA_L005_R1.fastq.gz
87
filtered_LTL_PS35_ATGTCA_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_PS35_ATGTCA_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_PS35_ATGTCA_L005_R1.fastq.gz
88
filtered_LTL_PS49_CCGTCC_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_PS49_CCGTCC_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_PS49_CCGTCC_L005_R1.fastq.gz
89
filtered_LTL_PS53_GTCCGC_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_PS53_GTCCGC_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_PS53_GTCCGC_L005_R1.fastq.gz
90
filtered_LTL_PS63_AGTTCC_L005
S_namaycush9/28/201210/17/12liverRNAIlluminaSE36
/Volumes/web/nightingales/S_namaycush/filtered_LTL_PS63_AGTTCC_L005_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/S_namaycush/filtered_LTL_PS63_AGTTCC_L005_R1.fastq.gz
91
filtered_174gm_A_BiGosperm_L006
65174.gmC_gigas10/11/1212/19/2012spermDNAIlluminaPE72BS-seqSRX386228
Genome-wide profiling of DNA methylation and gene expression in Crassostrea gigas male gametes
/Volumes/web/nightingales/C_gigas/filtered_174gm_A_BiGosperm_L006_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/C_gigas/filtered_174gm_A_BiGosperm_L006_R1.fastq.gz
/Volumes/web/nightingales/C_gigas/filtered_174gm_A_BiGosperm_L006_R2.fastq.gz
http://owl.fish.washington.edu/nightingales/C_gigas/filtered_174gm_A_BiGosperm_L006_R2.fastq.gz
92
filtered_106A_Female_Mix_GATCAG_L004
60106A Female MixO_lurida12/19/12gonadRNAIlluminaPE72Friedman
/Volumes/web/nightingales/O_lurida/filtered_106A_Female_Mix_GATCAG_L004_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_106A_Female_Mix_GATCAG_L004_R1.fastq.gz
/Volumes/web/nightingales/O_lurida/filtered_106A_Female_Mix_GATCAG_L004_R2.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_106A_Female_Mix_GATCAG_L004_R2.fastq.gz
93
filtered_106A_Male_Mix_TAGCTT_L004
61106A Male MixO_lurida12/19/12gonadRNAIlluminaPE72Friedman
/Volumes/web/nightingales/O_lurida/filtered_106A_Male_Mix_TAGCTT_L004_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_106A_Male_Mix_TAGCTT_L004_R1.fastq.gz
/Volumes/web/nightingales/O_lurida/filtered_106A_Male_Mix_TAGCTT_L004_R2.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_106A_Male_Mix_TAGCTT_L004_R2.fastq.gz
94
filtered_108A_Female_Mix_GGCTAC_L004
62108A Female MixO_lurida12/19/12gonadRNAIlluminaPE72Friedman
/Volumes/web/nightingales/O_lurida/filtered_108A_Female_Mix_GGCTAC_L004_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_108A_Female_Mix_GGCTAC_L004_R1.fastq.gz
/Volumes/web/nightingales/O_lurida/filtered_108A_Female_Mix_GGCTAC_L004_R2.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_108A_Female_Mix_GGCTAC_L004_R2.fastq.gz
95
filtered_108A_Male_Mix_AGTCAA_L004
63108A Male MixO_lurida12/19/12gonadRNAIlluminaPE72Friedman
/Volumes/web/nightingales/O_lurida/filtered_108A_Male_Mix_AGTCAA_L004_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_108A_Male_Mix_AGTCAA_L004_R1.fastq.gz
/Volumes/web/nightingales/O_lurida/filtered_108A_Male_Mix_AGTCAA_L004_R2.fastq.gz
http://owl.fish.washington.edu/nightingales/O_lurida/filtered_108A_Male_Mix_AGTCAA_L004_R2.fastq.gz
96
BiGillRNA_GACTAAGA67SB_PoolCHO
https://www.evernote.com/pub/che625/che625snotebook#st=p&n=13407ef0-b2b8-4c07-9bc8-1bbc73f42a2d
C_gigas5/14/20137/9/13gillRNAIlluminaPE50
pool of Sammish Bay gill samples
comparison of Sammish Bay oyster BS-seq and RNAseq profiles
/Volumes/web/nightingales/C_gigas/BiGillR_GACTAAGA_1.fastq.gzhttp://owl.fish.washington.edu/nightingales/C_gigas/BiGillR_GACTAAGA_1.fastq.gz
/Volumes/web/nightingales/C_gigas/BiGillR_GACTAAGA_2.fastq.gz
http://owl.fish.washington.edu/nightingales/C_gigas/BiGillR_GACTAAGA_2.fastq.gz
97
BiGoRNA_GTGTCTAC68174_gmCHO
https://www.evernote.com/pub/che625/che625snotebook#st=p&n=13407ef0-b2b8-4c07-9bc8-1bbc73f42a2d
C_gigas5/14/20137/9/13gonadRNAIlluminaPE50SRX386228
Genome-wide profiling of DNA methylation and gene expression in Crassostrea gigas male gametes
/Volumes/web/nightingales/C_gigas/BiGoR_GTGTCTAC_1.fastq.gzhttp://owl.fish.washington.edu/nightingales/C_gigas/BiGoR_GTGTCTAC_1.fastq.gz
/Volumes/web/nightingales/C_gigas/BiGoR_GTGTCTAC_2.fastq.gz
http://owl.fish.washington.edu/nightingales/C_gigas/BiGoR_GTGTCTAC_2.fastq.gz
98
m130619_081336_42134_c100525122550000001823081109281326_s1_p0
SJWO_lurida6/7/136/20/2013gillDNAPacBioPat
/Volumes/web/nightingales/O_lurida/m130619_081336_42134_c100525122550000001823081109281326_s1_p0.fastq
http://owl.fish.washington.edu/nightingales/O_lurida/m130619_081336_42134_c100525122550000001823081109281326_s1_p0.fastq
99
filtered_BS_CgF_TTAGGC_L004
BS CgFC_gigas8/26/139/24/13eggsDNAIlluminaPE72BS-seq
/Volumes/web/nightingales/C_gigas/filtered_BS_CgF_TTAGGC_L004_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/C_gigas/filtered_BS_CgF_TTAGGC_L004_R1.fastq.gz
/Volumes/web/nightingales/C_gigas/filtered_BS_CgF_TTAGGC_L004_R2.fastq.gz
http://owl.fish.washington.edu/nightingales/C_gigas/filtered_BS_CgF_TTAGGC_L004_R2.fastq.gz
100
filtered_BS_CgF_TTAGGC_L007
BS CgFC_gigas8/26/1312/17/2013eggsDNAIlluminaPE72BS-seq
/Volumes/web/nightingales/C_gigas/filtered_BS_CgF_TTAGGC_L007_R1.fastq.gz
http://owl.fish.washington.edu/nightingales/C_gigas/filtered_BS_CgF_TTAGGC_L007_R1.fastq.gz
/Volumes/web/nightingales/C_gigas/filtered_BS_CgF_TTAGGC_L007_R2.fastq.gz
http://owl.fish.washington.edu/nightingales/C_gigas/filtered_BS_CgF_TTAGGC_L007_R2.fastq.gz