ABCDEFGJKLM
1
SampleY readsCovSexPaperTopAnthrogenica - https://controlc.com/a90ae88fAlexNotes
2
I0231706,75414.65%MR-Y20993
M269>L23>Z2103>Z2106>Z2108
R1b->R-L754->R-L389->R-P297->R-M269->R-L23->R-Z2103->R-M12149->R-Z2106->R-Z2108->R-KMS67->R-Y20993(ISOGG:)
3
I0371119,3365.33%MR-Z2103M269>L23>Z2103R1b->R-L754->R-L389->R-P297->R-M269->R-L23->R-Z2103->R-M12149(ISOGG:R1b1a1b1b)
5
I0438419,2398.63%MR-Y20993
M269>L23>Z2103>Z2106>Z2108
R1b->R-L754->R-L389->R-P297->R-M269->R-L23->R-Z2103->R-M12149->R-Z2106->R-Z2108->R-KMS67->R-Y20993(ISOGG:)
6
I0440268,4409.80%MR-Y20993
M269>L23>Z2103>Z2106>Z2108
R1b->R-L754->R-L389->R-P297->R-M269->R-L23->R-Z2103->R-M12149->R-Z2106->R-Z2108->R-KMS67->R-Y20993(ISOGG:)
9
I10342286,1227.20%MR-P312M269>P312R-L151->R-P312(ISOGG:)P312
ZZ37>CTS7550+ (1A). Looks like just one poor quality read for Z38841+, which would exclude ZZ37. Don't see anything else near top of P312.
13
I10347155,5734.97%MG-BY27899YxM269G->G-P287->G-Y238->G-P15->G-L1259->G-L30->G-CTS574->G-CTS2488->G-P303->G-CTS796->G-L140->G-PF3346->G-PF3345->G-L497->G-Z1815->G-Y7538->G-Z1816->G-Y8903->G-BY27899(ISOGG:G2a2b2a1a1b1a1b2)
20
I11145252,0786.51%MR-Z251M269>P312R-L151->R-P312->R-S461->R-L21->R-DF13->R-Z251(ISOGG:R1b1a1b1a1a2c1a1e)L21>DF13>Z39589>Z251/S470Z251+ (4A)
21
I1114615,3480.88%MR-L52M269>L23>L51>P310R-L151->R-P312->R-S461->R-L21->R-DF13->R-Z253->R-S844(ISOGG:)
24
I11149277,6076.65%MR-S264M269R-L151->R-U106->R-S263->R-S264(ISOGG:)U106>Z2265>Z381/S263>S264/Z156Z381 (1T), Z8160 (1G)
27
I11152229,6036.70%MG-Z16775YxM269G->G-P287->G-Y238->G-P15->G-L1259->G-L30->G-CTS574->G-CTS2488->G-P303->G-CTS796->G-L140->G-PF3346->G-PF3345->G-L497->G-Z1815->G-Y7538->G-Z1816->G-Z1823->G-Z726->G-Z16775(ISOGG:G2a2b2a1a1b1a1a2b)
31
I11158200,6116.32%MR-Z280YxM269R1a->R-M459->R-M198->R-M417->R-Z645->R-Z283->R-Z282->R-Z280(ISOGG:R1a1a1b1a2)
35
I116315,5800.37%MR-M2690R-L151->R-P312->R-S461->R-L21->R-DF13->R-DF21->R-S3058->R-S424->R-S190->R-Y246946->R-Y12464->R-Z17998->R-Y16002->R-FGC21907->R-Y16004->R-Y16063->R-Y16064(ISOGG:)
41
I11712220,1365.83%MR-S7402M269>P312>U152>L2R-L151->R-P312->R-U152->R-L2->R-Z49->R-Z142->R-S7402(ISOGG:)
R-M269>L2/S139>Z41150>Z49>Z142/S211>Z150>BY33533
S7402+ (4G), BY33535+ (9A), BY33551+ (1G)
43
I1171575,7282.81%MR-L151M269R-L151->R-P312->R-U152->R-L2(ISOGG:R1b1a1b1a1a2b1)
50
I11972222,0136.21%MR-S263M269>U106R-L151->R-U106->R-S263(ISOGG:R1b1a1b1a1a1c)U106>Z2265>Z381/S2634T for S263/Z381
63
I12099192,3775.66%MG-S15656YxM269G->G-P287->G-Y238->G-P15->G-L1259->G-L30->G-CTS574->G-CTS2488->G-P303->G-CTS796->G-L140->G-PF3346->G-PF3345->G-L497->G-Z1815->G-Y7538->G-Z1816->G-Z1823->G-Z726->G-CTS4803(ISOGG:G2a2b2a1a1b1a1a2a)
70
I12110215,3115.64%MR-PF7592M269R1b->R-L754->R-L389->R-P297->R-M269->R-L23->R-L51->R-Z2118->R-Z2116->R-S1161->R-FGC48821->R-FGC12521->R-PF7592->R-CTS11659(ISOGG:)
72
I123123,8350.27%MI-M4360I2->I-L460->I-M436(ISOGG:I2a1b)
75
I12317120,2593.91%MI-A8742YxM269I2->I-L460->I-P37->I-M423->I-FGC41353->I-Y3104->I-L161->I-S2639->I-L1498->I-FT27731->I-Y12993->I-A8742(ISOGG:)
78
I12413175,4695.78%MR-DF27M269>P312R-L151->R-P312(ISOGG:)P312
Could be DF27, but just one positive read for DF27 and could be deamination.
82
I1261015,6610.80%MR-P2970R1b->R-L754->R-L389->R-P297->R-M269(ISOGG:R1b1a1b)
90
I12772153,0685.53%MG-Z1823YxM269G->G-P287->G-Y238->G-P15->G-L1259->G-L30->G-CTS574->G-CTS2488->G-P303->G-CTS796->G-L140->G-PF3346->G-PF3345->G-L497->G-Z1815->G-Y7538->G-Z1816->G-Z1823(ISOGG:G2a2b2a1a1b1a1a)
91
I12774178,7665.77%MR-S11475M269>P312R-L151->R-P312->R-DF27->R-BY21077->R-BY53783(ISOGG:)
96
I12783108,7774.09%MR-DF21M269>P312R-L151->R-P312->R-S461->R-L21->R-DF13->R-DF21->R-S5488->R-Z16294->R-Z16292->R-Y17454->R-Z16291->R-Z16284->R-BY3301(ISOGG:)
R-M269>Z290>L21/S145>DF13>DF21/S192>FGC3213>Z16532>Y34485>BY57019?
97
I12785150,4625.46%MR-DF21M269>P312R-L151->R-P312->R-S461->R-L21->R-DF13->R-DF21(ISOGG:R1b1a1b1a1a2c1a5)
R-M269>Z290>L21/S145>DF13>DF21/S192>FGC3213>Z16532>Y34485>BY57019?
101
I12791145,0695.57%MI-L160YxM269I2->I-L460->I-P37->I-CTS595->I-L158->I-Y3992->I-Z2049->I-L160->I-PF4088->I-CTS1758->I-Y2177->I-Z105->I-PF4189->I-A12373(ISOGG:)
104
I129008,3050.47%MR-M2690R-L151->R-P312->R-S461->R-L21->R-DF13->R-Z253->R-Z2534->R-Z2185->R-A7031(ISOGG:)
108
I1290728,4201.71%MR-S497M269R-L151->R-U106->R-S263->R-S264->R-S497(ISOGG:)U106
U106 (3A) Maybe R-M269>U106/S21>Z2265>Z381/S263.
109
I1292684,4523.58%MR-Z251M269>P312R-L151->R-P312->R-S461->R-L21->R-DF13->R-Z251(ISOGG:R1b1a1b1a1a2c1a1e)
R-M269>Z290>L21/S145>DF13>Z39589>Z251/S470>Z16943>Z16944>BY23665?
L21 is the safest call. 1A for Z251. The next step is speculative.
111
I1293181,9253.89%MI-Z105YxM269I2->I-L460->I-P37->I-CTS595->I-L158->I-Y3992->I-Z2049->I-L160->I-PF4088->I-CTS1758->I-Y2177->I-Z105(ISOGG:I2a1a1a1a1a1a~)
115
I13025200,6665.81%MR-U106M269R-L151->R-U106(ISOGG:R1b1a1b1a1a1)U106Don't see anything past it.
116
I1302612,7240.58%MR-KMS600R1b(ISOGG:)
119
I13467267,5296.77%MR-Z2108M269R1b->R-L754->R-L389->R-P297->R-M269->R-L23->R-Z2103->R-M12149->R-Z2106->R-Z2108(ISOGG:)
120
I13468232,8166.26%MI-S6635YxM269I2->I-L596->I-Y14158->I-S6635(ISOGG:I2a2a~)
121
I13469224,8336.11%MI-S6635YxM269I2->I-L596->I-Y14158->I-S6635->I-S6724->I-PF3885(ISOGG:)
123
I13471211,8036.41%MI-S6635YxM269I2->I-L596->I-Y14158->I-S6635->I-S6724->I-PF3885(ISOGG:)
128
I1362018,0131.10%MR-L2R-L151->R-P312->R-U152->R-L2(ISOGG:R1b1a1b1a1a2b1)
129
I136212,6260.19%MR-P2970R1b->R-L754->R-L389->R-P297(ISOGG:)
130
I1362330,6501.58%MR-L151M269R-L151(ISOGG:)Likely L151. But poor coverage
131
I1368043,9002.03%MR-Z16887M269R-L151->R-P312->R-S461->R-L21->R-DF13->R-S1026->R-Z16887(ISOGG:)
132
I136811,0380.08%M..0Q->Q-L472->Q-L56->Q-L53->Q-L54->Q-M1107->Q-M930->Q-M3->Q-Y4276->Q-Y4303->Q-Y4294->Q-Y4277->Q-Y4300->Q-Y4290->Q-Y6131(ISOGG:)
133
I13682290,4625.53%MR-P312M269>P312R-L151->R-P312->R-DF27->R-Z195->R-Z198->R-L165(ISOGG:R1b1a1b1a1a2a1b2)
139
I13689135,3084.15%MR-A11676M269>P312R-L151->R-P312->R-S461->R-L21->R-DF13->R-Z253->R-Z2534->R-Z2185(ISOGG:R1b1a1b1a1a2c1a4b2c)
R-M269>Z290>L21/S145>DF13>ZZ10>Z253>Z2534>ZZ5>Z2185>A7037>S884
Z2184+ (5G), S884+ (1C)
140
I136908910.09%MF0P->P-M1254->P-PF5867(ISOGG:)
141
I1371063,3642.00%MR-M269M269R-L151->R-P312->R-U152->R-L2(ISOGG:R1b1a1b1a1a2b1)
148
I137204,2120.24%MF0F(ISOGG:)
164
I13759149,5175.22%MR-Z2572M269>P312>U152>L2R-L151->R-P312->R-U152->R-L2(ISOGG:R1b1a1b1a1a2b1)L2+ (2T)
166
I13780208,3665.74%MR-YP5267YxM269R1a->R-M459->R-M198->R-M417->R-Z645->R-Z283->R-Z282->R-PF6155->R-M458->R-PF7521->R-Y2604->R-CTS11962->R-L1029->R-YP263->R-Y18892->R-YP5267(ISOGG:R1a1a1b1a1a1c1a3a~)
171
I13788234,5026.60%MR-S497M269R-L151->R-U106->R-S263->R-S264->R-S497(ISOGG:)
U106/S21>Z2265>Z381/S263>S264/Z156>Z305>Z307>S265/Z304
5A for Z304.
177
I13795246,4307.08%MR-Z280YxM269R1a->R-M459->R-M198->R-M417->R-Z645->R-Z283->R-Z282->R-Z280(ISOGG:R1a1a1b1a2)
182
I13890160,8055.99%MI-L1193YxM269I2->I-L460->I-M436->I-M223->I-Y3259->I-CTS616->I-Y3721->I-M284->I-L1195->I-Y3709->I-L1193(ISOGG:)
183
I1389193,2194.24%MI-Y3709YxM269I2->I-L460->I-M436->I-M223->I-Y3259->I-CTS616->I-Y3721->I-M284->I-L1195->I-Y3709(ISOGG:I2a1b1a1a1b~)
184
I13892126,3455.01%MI-Y3709YxM269I2->I-L460->I-M436->I-M223->I-Y3259->I-CTS616->I-Y3721->I-M284->I-L1195->I-Y3709(ISOGG:I2a1b1a1a1b~)
185
I13893212,9646.49%MI-Y3709YxM269I2->I-L460->I-M436->I-M223->I-Y3259->I-CTS616->I-Y3721->I-M284->I-L1195->I-Y3709(ISOGG:I2a1b1a1a1b~)
186
I13897161,8115.33%MI-Y3712YxM269I2->I-L460->I-M436->I-M223->I-Y3259->I-CTS616->I-Y3721->I-M284->I-L1195->I-Y3709->I-L1193(ISOGG:)
187
I13898357,87910.85%MI-Y3709YxM269I2->I-L460->I-M436->I-M223->I-Y3259->I-CTS616->I-Y3721->I-M284->I-L1195->I-Y3709(ISOGG:I2a1b1a1a1b~)
188
I13899227,12810.25%MI-Y3712YxM269I2->I-L460->I-M436->I-M223->I-Y3259->I-CTS616->I-Y3721->I-M284->I-L1195->I-Y3709->I-L1193->I-Y3712(ISOGG:)
199
I14105108,0204.73%MR-P312M269>P312R-L151->R-P312->R-DF27->R-FGC67076->R-BY11969(ISOGG:)
201
I1410747,5533.05%MR-CTS6919M269>P312R-L151->R-P312->R-S461->R-L21->R-DF63->R-CTS6919(ISOGG:)R-M269>Z290>L21/S145>DF63/S522>CTS6919DF63+ (1C), A91+ (1A)
207
I14190196,2866.11%MI-S21825YxM269I2->I-L460->I-P37->I-CTS595->I-S21825->I-Y4213->I-Y4192->I-Y28222->I-BY33170->I-BY33164->I-BY33169->I-M838->I-Y28224(ISOGG:)
210
I14193225,2955.92%MR-Z280YxM269R1a->R-M459->R-M198->R-M417->R-Z645->R-Z283->R-Z282->R-Z280(ISOGG:R1a1a1b1a2)
211
I1420013,1180.82%MR-SK21110R-L151->R-P312->R-U152->R-L2->R-Y20253->R-Y93543->R-SK2111(ISOGG:)
214
I14347115,6334.78%MR-DF23M269>P312R-L151->R-P312->R-S461->R-L21->R-DF13->R-DF49->R-Z2980->R-Z2976->R-DF23(ISOGG:)
R-M269>Z290>L21/S145>DF13>Z39589>DF49/S474>Z2980>Z2976>DF23
218
I14353117,9125.05%MR-L21M269>P312R-L151->R-P312->R-S461->R-L21(ISOGG:R1b1a1b1a1a2c1)R-M269>Z290>L21/S145>DF63/S522>CTS6919Z16243 (1A)
220
I143591,2230.11%MF0R-L151(ISOGG:)Not sure if it is even R-M269
225
I14380245,6216.68%MR-L21M269>P312R-L151->R-P312->R-S461->R-L21(ISOGG:R1b1a1b1a1a2c1)R-M269>Z290>L21/S145>DF63/S522>FT38401
228
I1446558,1672.11%ME-V130E->E-M5479->E-P147->E-P177->E-M215->E-M35->E-L539->E-M78->E-Z1919->E-L618->E-V13(ISOGG:)
230
I1446810,1580.59%MR-M2690R-L151->R-P312->R-DF27->R-FGC20747->R-V3505->R-Y31383->R-Y31385->R-Y36419(ISOGG:)
231
I1448110,2490.75%MI-Z20690I2->I-L460->I-M436->I-M223->I-Y3259->I-CTS616->I-Y3721->I-Y3670->I-L1229->I-Z2069(ISOGG:I2a1b1a1b1a~)
236
I14552122,3324.74%MR-M269M269>P312R-L151->R-P312->R-U152->R-FT27293->R-A274(ISOGG:)
239
I147425,8450.39%MP-P3370R-L151->R-P312->R-S461->R-L21->R-DF13->R-Z251->R-S11556->R-S9294->R-Y11273->R-FGC11986->R-FGC12414->R-BY107437(ISOGG:)
251
I1480982,7783.19%MR-P312M269>P312R-L151->R-P312(ISOGG:)P312L21-
255
I14859103,6704.16%MR-P312M269>P312R-L151->R-P312(ISOGG:)P312
L21-. Maybe ZZ11+ (7C 1G). Maybe DF27- (1G). Maybe ZZ20+ (1A 2G)
257
I14861121,9754.66%MR-P312M269>P312R-L151->R-P312(ISOGG:)P312L21-. Maybe ZZ11+ (7C 1G)
262
I14866126,2344.47%MI-L1195YxM269I2->I-L460->I-M436->I-M223->I-Y3259->I-CTS616->I-Y3721->I-M284->I-L1195(ISOGG:I2a1b1a1a~)
265
I1498389,5483.73%MR-Z2110M269R1b->R-L754->R-L389->R-P297->R-M269->R-L23->R-Z2103->R-M12149->R-Z2106->R-Z2108->R-Z2110->R-Y39302(ISOGG:)
269
I1498766,0393.03%MR-P312M269>P312R-L151->R-P312->R-U152->R-L2->R-Z49->R-Z142->R-FGC22963->R-FGC22940(ISOGG:R1b1a1b1a1a2b1c1c)FGC22940 (1A, but could be deamination)
270
I1498872,1142.91%MR-Z645YxM269R1a->R-M459->R-M198->R-M417->R-Z645->R-Z283->R-Z282->R-Z280->R-CTS1211->R-Y35->R-CTS3402->R-YP237->R-FGC13681->R-YP420->R-YP419->R-FGC13703(ISOGG:)
271
I15027258,3837.00%MR-PH4023M269>P312R-L151->R-P312(ISOGG:)
273
I15029259,8197.00%MI-Y21997YxM269I2->I-L460->I-P37->I-CTS595->I-L158->I-Y3992->I-Z2049->I-Y11222->I-BY40578->I-Y21997(ISOGG:)
274
I15030175,9685.23%MI-L160YxM269I2->I-L460->I-P37->I-CTS595->I-L158->I-Y3992->I-Z2049->I-L160(ISOGG:I2a1a1a1a1)
276
I15032253,2506.70%MI-L161YxM269I2->I-L460->I-P37->I-M423->I-FGC41353->I-Y3104->I-L161->I-S2639->I-A812->I-Y12072(ISOGG:I2a1a2a1b)
281
I15040115,6405.20%MI-L699YxM269I2->I-L460->I-M436->I-M223->I-Y3259->I-CTS616->I-CTS10057->I-L701->I-Y5606->I-L699(ISOGG:I2a1b1a2a2a~)
282
I15041169,1905.39%MR-L2M269>P312R-L151->R-P312->R-U152->R-L2(ISOGG:R1b1a1b1a1a2b1)
283
I15042257,6857.14%MR-P312M269>P312R-L151->R-P312(ISOGG:)P312
Might be ZZ11+ (DYZ19 - 7C 1G), might be PF6658+ (DYZ19 - 2A 3G). This last variant found in U152>Z193 block.
288
I1504799,7284.48%MR-Z283YxM269R1a->R-M459->R-M198->R-M417->R-Z645->R-Z283(ISOGG:R1a1a1b1~)
289
I15048174,9906.56%MR-BY32273M269>P312R-L151->R-P312->R-U152->R-Z36->R-A7970->R-A12417->R-BY32273(ISOGG:)
290
I1504956,5872.73%MR-Z645YxM269R1a->R-M459->R-M198->R-M417->R-Z645->R-Z283->R-Z282->R-Z280->R-S24902->R-YP561(ISOGG:)
291
I1507136,4251.88%MI-S183310I2->I-L460->I-M436->I-M223->I-Y3259->I-CTS616->I-Y3721->I-Y3670->I-L1229->I-S18331(ISOGG:I2a1b1a1b1b~)
293
I1564377,8133.68%MI-S6635YxM269I2->I-L596->I-Y14158->I-S6635->I-S6724->I-PF3885(ISOGG:)
295
I1564667,7173.80%MI-S6635YxM269I2->I-L596->I-Y14158->I-S6635(ISOGG:I2a2a~)
296
I1564854,6142.79%MR-V2219YxM269R1b->R-L754->R-V2219->R-V88(ISOGG:R1b1b)
297
I1565082,5733.75%MR-L754YxM269R1b->R-L754->R-V2219->R-V88(ISOGG:R1b1b)
301
I1582372,3713.08%MJ-PF5252YxM269J2->J-M410->J-PF4610->J-L26->J-PF5087->J-PF5160->J-PF5197->J-PF5172->J-Z7314->J-PF5169->J-PF5174->J-PF5177->J-PF5252(ISOGG:)
304
I1582648,6551.60%MR-L7540R1b->R-L754(ISOGG:R1b1)
305
I15950115,1514.14%MR-Y24836M269R-L151->R-U106->R-S263->R-S264->R-S497->R-Y24836(ISOGG:)
R-M269>U106/S21>Z2265>Z381/S263>S264/Z156>Z305>Z307>S265/Z304>BY12480>BY12482
7G for BY12482 Y28944
309
I15954119,3524.49%MR-L2M269>P312R-L151->R-P312->R-U152->R-L2(ISOGG:R1b1a1b1a1a2b1)
310
I15955118,1004.65%MR-S1161M269R1b->R-L754->R-L389->R-P297->R-M269->R-L23->R-L51->R-Z2118->R-Z2116->R-S1161(ISOGG:R1b1a1b1a2a)
317
I160868,1140.42%M..0R1(ISOGG:)