HUPO PSI spring meeting 2019, Breakwater Lodge Cape Town
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HUPO PSI spring meeting 2019, Breakwater Lodge, Cape Town
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Monday 18 March 2019
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9:00Registration & Welcome, Introduction (Andy Jones, U. Liverpool) Plenary room
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9:20Talk 1: Jonathan Blackburn, University of Cape Town
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9:50Talk 2: Norman Davey, University College Dublin
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10:20Talk 3: TBD
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10:50Coffee Break
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11:20Activities overview (15 min each): Molecular Interactions/IMEx (Sandra Orchard), Mass spectrometry (Eric Deutsch), Proteome informatics (Juan Antonio Vizcaino), Quality Control (Dave Tabb), ProteomeXchange (Juan Antonio Vizcaino), Metabolomics Standards Initiative (TBC - Steffen Neumann or Reza Salek)
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13:00Lunch at venue
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14:00Breakout room 1 Track 1 - Molecular interactionsPlenary room: Joint session: Mass spectrometry / Proteome Informatics / QC
(Deutsch / Vizcaino / Jones)
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PSI-MI activities overview (Sandra)Joint MS / PI / QC / session
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15:00Preliminary discussions on mzML, PEFF, mzIdentML, mzQuantML, mzTab, controlled vocabulary, spectral library format, MIAPE, proBAM, proBed, PROXI, qcML, USI, Crosslinking, PSI-MOD (PAB & Sylvie)
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15:30Coffee Break
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16:00PSI-MI XML3.0 update - do we need a point release? Joint MS / PI / QC session
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17:00
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7 PM (TBC)
Workshop dinner (TBC)
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Tuesday 19 March 2019
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9:00Room XX
Track 1 - Molecular Interactions
Room XX
Track 2 - Mass spectrometry
Room XX
Track 3 -Proteome Informatics / Metabolomics / Break-outs
Room XX
Track 4 - Quality Control
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New curation challengesPEFFmzTab-M implementationsFormalize suggested CV updates
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9:30
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10:00
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10:30
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11:30ProteomeXchange
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12:00
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12:30
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13:00Lunch at venue
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14:00Track 1 - Molecular InteractionsTrack 2 - Mass spectrometryTrack 3Track 4 - Quality Control
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Univeral Spectrum ID (USI)mzTab-MDevelop examples of CV terms
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14:30
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15:00
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15:30Coffee break
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16:00mzMLmzTab for proteomicsReview updated MIAPE-QC
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17:00End of Day 2
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18:00Make own arrangements for dinner
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Wednesday 20 March 2019
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9:00Room XX
Track 1 - Molecular Interactions
Room XX
Track 2 - Mass spectrometry
Room XX
Track 3
Room XX
Track 4 - Quality Control
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IMEx - a single combined dataset - funding applications, progress, plans (Sandra)Spectral Library Format (+ metabolomics input)PSI-MODSpecial Topic: Implementation in repositories
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9:30
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10:00CV Update (Mayer) - PSI-MS and XLMOD CVSpecial Topic: Current status of implementations
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10:30Coffee break
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11:00PROXIBreakout on mzTab for proteomics (either in parallel or following depending on interest levels)
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12:00
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12:30Summary, wrap upproBed and proBAM
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13:00Lunch at venue
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14:00mzTab - DIASummary, wrap-up
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Summary, wrap upSummary, wrap-upSummary, wrap upSummary, wrap-up
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15:00Common Session Plenary Room
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15:30Further plans, HUPO congress 2019, 2020 workshop, Closing (Orchard)
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16:00End of PSI meeting 2019
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17:00
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