yeast_regulons_LCG-BEII_2023-02.xlsx

	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P	Q	R	S	T	U	V	W	X	Y	Z	AA	AB	AC	AD	AE	AF	AG	AH	AI	AJ	AK	AL	AM	AN	AO	AP	AQ	AR	AS	AT	AU	AV	AW	AX
1	Analysis of k-mers in yeast non-coding upstream sequences
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3										Analysis of the regulon promoters - selection with gene name prefix in RSAT gene-info								Analysis of the promoters - selection with GO term in AMIGO								Analysis of the promoters - selection with GO term in Biomart								Logo of the most significant motif	Analysis of upstream sequences from random selections of yeast genes								Analysis of upstream sequences from random selections of Human genes
4	Min score										0.51		0.01		0.11		0.94		0.26		0.37		0.34		0.08		0.60		0.37		0.28		0.08			-0.69		-1.34		-0.99		-0.20		-0.43		-0.53		-0.38		-0.28
5	Max score										10.76		12.18		6.00		9.86		5.29		4.63		3.03		4.23		5.64		4.88		3.03		4.57			0.43		0.73		1.30		0.69		2.57		0.52		0.70		1.45
6	Median score										2.87		2.56		1.86		2.15		1.13		0.72		2.33		1.02		2.44		0.68		1.05		1.38			0.05		0.17		0.14		0.47		0.50		-0.07		0.28		0.47
7	Mean scores										4.23		4.66		2.62		3.61		2.06		1.70		1.90		1.53		2.77		1.97		1.35		2.00			0.01		0.00		0.16		0.39		0.83		-0.04		0.18		0.49
8	First Name	Last name	Selected biological process	AMIGO: total number of genes for the process	AMIGO:: non-redundant nb genes for Saccharomyces cerevisiae	Biomart : number of genes for the GO term	Query for quick search in RSAT gene-info	RSAT: number of genes found	RSAT: names of the selected genes (separate by comma)	Most significant 6nt	Highest 6nt sig	Most significant 7nt	Highest 7nt sig	Most significant 8nt	Highest 8nt sig	Most significant dyad	Highest dyad sig	Most significant 6nt	Highest 6nt sig	Most significant 7nt	Highest 7nt sig	Most significant 8nt	Highest 8nt sig	Most significant dyad	Highest dyad sig	Most significant 6nt	Highest 6nt sig	Most significant 7nt	Highest 7nt sig	Most significant 8nt	Highest 8nt sig	Most significant dyad	Highest dyad sig	Logo of the most significant motif	Most significant 6nt	Highest 6nt sig	Most significant 7nt	Highest 7nt sig	Most significant 8nt	Highest 8nt sig	Most significant dyad	Highest dyad sig	Most significant 6nt	Highest 6nt sig	Most significant 7nt	Highest 7nt sig	Most significant 8nt	Highest 8nt sig	Most significant dyad	Highest dyad sig

9	Jacques	van Helden	de novo L-methionine biosynthetic process	87	2		MET\d+ SAM\d+	26		cacgtg	10.01	cacgtga	12.18	aactgtgg	6	cacn{0}gtg	9.04																		-cgctgc	-0.69	actcatc	-0.17	cctcgata	-0.3	acgn{6}tta	0.6	tattaa	2.57	attaata	0.14	ccgccgaa	0.7	tatn{0}taa	1.45
10	Andres	Rivera	sulfur aminoacid biosynthesis	3927	112	41	MET,MCY,CYS,SAM,ARO,MDE,BAT,HOM,UTR,STR		MET6,MCY1,CYS3,MET14,SAM4,BAT2,ARO9,MET30,CYS4,MDE1,MET28,MET12,MET1,MET10,UTR4,ADI1,MET5,ARO8MET17,MET16,MET22,HOM6,STR3,MET3,BAT1,ADE3,HOM3,IRC7,MIS1,MET13,MRI1,MHT1,MEU1,MET2,THR1,STR2, HOM2	cacgtg	10.76	cacgtga	9.42	aactgtgg	5.28	cacn{0}gtg	9.86																		gcggga	-0.02	cgatgaa	-0.28	atacaccg	0.21	actn{8}aat	0.69	aactga	-0.43	aacgaaa	-0.53	agttgttg	-0.38	gctn{5}ccc	0.01
11	Héctor	Gaspar	homocysteine and cysteine interconversion	631	19	10	YAL, YGR, YHR, YLR, YLL, YGL, YML, YOR, YFR, YJR	10	CYS3, CYS4, YHR112C, MET17, YLL058W, STR3, YML082W, YOR251C, IRC7, STR2	gccaca	1.04					gcan{8}tca	0.94	tggcaa	0.26	aactgtg	0.65	-	-	gcan{8}tca	1.02	gccaca	1.04	gccacac	0.61	-	-	gcan{8}tca	0.94		tcgaga	-0.05	atcgaga	0.34	atcccgcc	1.3	actn{8}aat	0.3	agtgcc	1.05	acttaaa	-0.07	gcactggc	-0.29	agtn{0}gcc	-0.11
12	Victor	Plascencia	L-lysine biosynthesis	993	14	14	ACO\d+ ARO\d+ HOM\d+ LYS\d+	23	ACO2,ACO1,ARO4,ARO3,ARO1,ARO10,ARO80,ARO8,ARO2,ARO9,ARO7,HOM2,HOM3,HOM6,LYS2,LYS20,LYS21,LYS14,LYS4,LYS12,LYS1,LYS5,LYS9	aattcc	3.93	aattccg	3.39	aattccgc	1.87	aatn{0}tcc	2.83	aattcc	5.29E+00	aaattcc	4.63	aattccgc	3.03	aatn{0}tcc	4.23	aattcc	5.29E+00	aaattcc	4.63	aattccgc	3.03	aatn{0}tcc	4.23		taacaa	-0.21	gataaga	-1.34	gcagtaga	-0.99	aacn{16}att	-0.2	gaggaa	1.85	agatcct	0.52	atctatcc	0.41	atgn{2}tgg	0.89
13	Brenda	Lopez	thiamine diphosphate biosynthesis	231	15	8	THI\d+	17	THI2, THI3, THI74, THI5, THI4, THI11, THI73, THI7, THI12, THI20, THI71, THI80, THI72, THI21, THI6, THI22	tatgca	2.81	6.50E-03	2.19	ctgacgcc	0.27	tatn{0}gca	1.64	tataca	0.6	cctataa	0.37	none	none	gatn{17}ata	1.38	tataca	0.6	cctataa	0.37	none	none	gatn{17}ata	1.38		none	none	none	none	aaccatcg	0.34	none	none	aaacca	0.23	none	none	none	none	ctan{14}tga	1.04
14	Diana	Delgado	NAD de novo biosynthesis II (from tryptophan)	184	11	6	BNA\d+	6	BNA4,BNA6,BNA5,BNA2,BNA,1	ctgtca	1.7	0		0		aacn{3}cgt	0.94
15	Natalia	Gutiérrez	gluconeogenesis	2357	1	1	AAT2	1	AAT2
16	Aldo	García	Ergosterol biosynthesis	817	26	30	DAP\d+ ERG\d+ HMG\d+ IRC\d+ IRC\d+ MCR\d+ MOT\d+ NCP\d+ RRI\d+ RSP\d+		DAP1,ERG1,ERG10,ERG11,ERG12,ERG13,ERG2,ERG20,ERG24,ERG25,ERG26,ERG27,ERG28,ERG29,ERG3,ERG4,ERG5,ERG6,ERG7,ERG8,ERG9,HMG1,HMG2,IRC21,MCR1,MOT3,NCP1,RRI1,RSP5	aaacga	7.47	taaacga	9.21	ctaaacga	4.54	aaan{0}cga	6.37																				-	-	-	-
17	Lot	Hernández	gluconeogenesis	2359	15	33	ERT\d+ FBA\d+ FBP\d+ GPM\d+ MDH\d+ PCK\d+ PGI\d+ PGK\d+ PYC\d+ SDL\d+ TDH\d+ TPI\d+	33	UBP14,VID24,PGI1,PYC2,YBR239C,GID7,PGK1,TPI1,RMD5,PIB1,SNF1,ACN9,UBC8,PYC1,SNF4,VID30,YGR066C,TDH3,ENO1,ENO2,VID28,FYV10,TDH1,SIP4,GSM1,TDH2,FBA1,GPM1,PCK1,FBP1,TSA1,GID8,MDH2	cacaca	3.47	acacaca	2.56	acacacaa	1.85	acan{1}aca	2.85	aaggga	2.44	cgccgcc	0.75	aaaaaggg	0.34	aagn{19}gcg	0.27	aaggga	2.44	cgccgcc	0.75	aaaaaggg	0.34	aagn{19}gcg	0.27		aaccaa	0.43	No se encontro	0	acaagccc	0.07	aagn{9}gtg	0.47	catgtc	0.39	aaagctt	-0.28	agaatctc	0.52	gcgn{14}gaa	-0.28
18	Rogelio	Ávila	arsenic detoxification	573	8	5	-	-	-	-	-	-	-	-	-	-	-	ggagac	0.73	-	-	-	-	gaan{4}cca	0.08	ggagac	0.73	-	-	-	-	gaan{4}cca	0.08		-	-	-	-	-	-	-	-	aaattt	0.34	-	-	-	-	-	-
19	César	Esparza	hypusine biosynthesis	314	7	2		2	LIA1, DYS1					cgtgggag	0.11
20	Melissa	Mayén	glycogen biosynthesis	570	13	24	GSY\d+ GLC\d+ GLG\d+ GAC\d+ PCL\d+ PGM\d+	19	GSY1, GSY2, GLC3, GLC7, GLC8, GLG2, GLG1, GAC1, PCL9, PCL2, PCL7, PCL6, PCL10, PCL5,PCL1, PCL8, PGM1,PGM2,PGM3	cagggg	2.01	cccctga	0.01	-	-	gacn{7}tgc	1.23	cagggg	1.13	caggaac	0.68	-	-	cccn{11}tag	0.83	cagggg	3.63	cccctga	0.6	atcagggg	0.28	cagn{0}ggg	2.55		cggata	0.12	cggataa	0.73	cggataaa	0.67	cctn{18}gca	0.51
21	César2	Esparza	glyoxylate cycle	234	21	9	IDP\d+ MDH\d+ MLS\d+	8	MDH3, IDP2 ,ICL1, LEU2, DAL7, MLS1, IDP3, CIT2	accggc	0.51	accggcg	0.6			acgn{6}tat	2.15																		cgagca	0.27	aataagc	0.35	none	none	cgan{0}gca	0.34	ataaaa	0.6	none	none	ataatgtg	0.28	aaan{13}aac	0.67
22	Rogelio	Avila	L-arginine biosynthesis	1100	13	5	ARG\d+	9	ARG2, ARG3, ARG4, ARG1, ARG 5, 6, ARG82, ARG81, ARG80, ARG8	gagtca	2.87	atgactc	2.38	aatgactc	1.07	gagn{0}tca	1.83	gagtca	3.98	atgactc	3.11	aatgactc	2.33	gagn{0}tca	2.9	gagtca	5.64	atgactc	4.88	aatgactc	1.76	gagn{0}tca	4.57		actaga	0.26	aactaga	0.36	ccatcacc	0.01	none	none	-	-	-	-	acttggca	0.04	ctgn{17}gcc	0.26
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