ChemDat chem hazard info nodes - 2014
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Chemical information nodes
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compiled by Akos Kokai (UC Berkeley) edited by Tom Lent and Michel Dedeo
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This is a list of chemical information resources on the internet, focused on (1) sources of chemical hazard information; (2) sources of information related to alternatives analysis and substitution; and (3) linked open data sources. These resources can be thought of as nodes in a network, although the vast majority of them are isolated rather than linked.
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Different colours are used in each column of the table, to highlight the following aspects of each resource – aspects which are relevant for building a linked chemical information commons.
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OrganizationContentsArchitectureData reuse policy
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Colour legend:collaborative editinglinked datamachine-readable dataopen data
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openly collaborativemajor hub
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Role: EndpointRole: RSLsRole: Haz AssessRole: Alt AssessRole: Sci LitRole: ID & PhysRole: Use data (functional & volume)substancesOrganization:
(openly) collaborative editing (Y/N)
Contents (Search results)Contents:
active in linking data
ArchitectureURI ( Uniform resource identifier) based navigationAPI ServicesData reuse policyData reuse policy:
Open Data (Y/N)
Unique IDSearch optionsAccessDescriptionNotes
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prototypical examples - feel free to fill in and commentEndpoint specific hazard lists either authoritative or screeningRestricted Substance ListsChemical level hazard assessments (e.g. GreenScreen)Alternatives assessments for subsitutionScience literature/testing data associated with specific chemicals and endpoints Chemical IDs & physical attributesis there a URN (uniform resource name) such as CASRN that when appended to a URL (uniform resource locator) retrieves a page for a specific chemical?Does the source offer API services? At charge or free?
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Repository - provides registry for publishing dataPharosPubChemPubChem
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Aggregator- actively collects and parses data from multiple other online sourcesPharosPharosPharosSUBSPORTHSDBWikipedia
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Source - generates its own lists or assessments or dataProp 65SIN listGreenScreenEPA DFE AA?
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Portal - provides web interface or links to other sources, registries or aggregatorseChemPortal
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Translator - translates and repackages underlying data for special audiences (doctors, workers, etc)ChemHat
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User - uses this information in assessmentsGreenScreenGreenScreenProp 65
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For a definition of open data, see this page and links therein:http://opendefinition.org/okd/
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Continue to the "List" tab...
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NB. This is a 'reboot' of my list of chemical hazard information resources:https://docs.google.com/document/d/1XmywmkZyXDso6GbWQPPuRNN_X3k7LNxFRym1xAU1SSE/edit?authkey=CPaOkOMG
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definitions from previous version
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Aggregator- actively collects data from multiple other online sources
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Portal - provides web interface for info from other sources, registries or aggregators
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Explanation
List of resources-Appdx 1
addnl sources
Chemical ID types-Appdx 2
Questions
Chemical ID cross-references
Deposits
ChemDat 3) outline