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1 | Functional.genomics | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | strain | breed | cultivar | isolate | ecotype | biological_replicate | technical_replicate | antibody | biomaterial_provider | collection_date | geo_loc_name | lat_lon | age | cell_line | cell_type | chem_administration | clinical_history | compound | culture_collection | dev_stage | diet | disease | disease_stage | dose | fraction | genetic_modification | genotype | growth_condition | growth_protocol | infection | isolation_source | karyotype | passage_history | phenotype | sample_type | sex | specimen_voucher | stimulus | stress | temp | time | tissue | treatment | |||||||||||||||||||||||||||||||||||||||||||||||
3 | Arabidopsis control for heat stress rep 1 | Arabidopsis control for heat stress rep 1 | Arabidopsis control for heat stress, biological replicate 1 | Arabidopsis thaliana | 3702 | Col-0 | 1 | 2016-10-01 | 9 days | 22 degrees C | leaf | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4 | Arabidopsis control for heat stress rep 2 | Arabidopsis control for heat stress rep 2 | Arabidopsis control for heat stress, biological replicate 2 | Arabidopsis thaliana | 3702 | Col-0 | 2 | 2016-10-01 | 9 days | 22 degrees C | leaf | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5 | Arabidopsis heat stress rep 1 | Arabidopsis heat stress rep 1 | Arabidopsis heat stress, biological replicate 1 | Arabidopsis thaliana | 3702 | Col-0 | 1 | 2016-10-01 | 9 days | 37 degrees C | 10 | leaf | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6 | Arabidopsis heat stress rep 2 | Arabidopsis heat stress rep 2 | Arabidopsis heat stress, biological replicate 2 | Arabidopsis thaliana | 3702 | Col-0 | 2 | 2016-10-01 | 9 days | 37 degrees C | 10 | leaf | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8 | MIMS.me.host-associated | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | strain | breed | cultivar | isolate | label | biomaterial_provider | *collection_date | *env_biome | *env_feature | *env_material | *geo_loc_name | *lat_lon | *project_name | ref_biomaterial | *host | rel_to_oxygen | samp_collect_device | samp_mat_process | sample_size | source_material_id | depth | elev | altitude | age | blood_press_diast | blood_press_syst | body_habitat | body_product | chem_administration | dry_mass | family_relationship | genotype | gravidity | height_or_length | host_body_site | host_body_temp | host_color | host_common_name | host_diet | host_disease_stat | host_growth_cond | host_shape | host_subject_id | host_taxid | infra_specific_name | infra_specific_rank | last_meal | life_stage | misc_param | organism_count | oxy_stat_samp | perturbation | phenotype | samp_salinity | samp_store_dur | samp_store_loc | samp_store_temp | sex | substrate | temp | tot_mass | replicate | ||||||||||||||||||||||||||||
10 | L1_1 | gut content sample of silver carp no.1_1 | fish gut metagenome | 1602388 | PRJDB3256 | 2012-04-10 | not applicable | not applicable | feces | China:Wuhan, Dongxihu Fish Farm | 30.64 N 114.21 E | Intestinal microbiota diversity of freshwater fish | Hypophthalmichthys molitrix | no.1 | biological replicate 1 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11 | L1_2 | gut content sample of silver carp no.1_2 | fish gut metagenome | 1602388 | PRJDB3256 | 2012-04-10 | not applicable | not applicable | feces | China:Wuhan, Dongxihu Fish Farm | 30.64 N 114.21 E | Intestinal microbiota diversity of freshwater fish | Hypophthalmichthys molitrix | no.1 | biological replicate 2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12 | L2_1 | gut content sample of silver carp no.2_1 | fish gut metagenome | 1602388 | PRJDB3256 | 2012-04-10 | not applicable | not applicable | feces | China:Wuhan, Dongxihu Fish Farm | 30.64 N 114.21 E | Intestinal microbiota diversity of freshwater fish | Hypophthalmichthys molitrix | no.2 | biological replicate 1 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13 | L2_2 | gut content sample of silver carp no.2_2 | fish gut metagenome | 1602388 | PRJDB3256 | 2012-04-10 | not applicable | not applicable | feces | China:Wuhan, Dongxihu Fish Farm | 30.64 N 114.21 E | Intestinal microbiota diversity of freshwater fish | Hypophthalmichthys molitrix | no.2 | biological replicate 2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14 | LB_1 | gut mucosa sample of silver carp 1 | fish gut metagenome | 1602388 | PRJDB3256 | 2012-04-10 | not applicable | not applicable | mucus | China:Wuhan, Dongxihu Fish Farm | 30.64 N 114.21 E | Intestinal microbiota diversity of freshwater fish | Hypophthalmichthys molitrix | no.1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15 | LB_2 | gut mucosa sample of silver carp 2 | fish gut metagenome | 1602388 | PRJDB3256 | 2012-04-10 | not applicable | not applicable | mucus | China:Wuhan, Dongxihu Fish Farm | 30.64 N 114.21 E | Intestinal microbiota diversity of freshwater fish | Hypophthalmichthys molitrix | no.2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16 | W1_1 | gut content sample of Wuchang bream no.1_1 | fish gut metagenome | 1602388 | PRJDB3256 | 2012-04-10 | not applicable | not applicable | feces | China:Wuhan, Dongxihu Fish Farm | 30.64 N 114.21 E | Intestinal microbiota diversity of freshwater fish | Megalobrama amblycephala | no.1 | biological replicate 1 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17 | W1_2 | gut content sample of Wuchang bream no.1_2 | fish gut metagenome | 1602388 | PRJDB3256 | 2012-04-10 | not applicable | not applicable | feces | China:Wuhan, Dongxihu Fish Farm | 30.64 N 114.21 E | Intestinal microbiota diversity of freshwater fish | Megalobrama amblycephala | no.1 | biological replicate 2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18 | W2_1 | gut content sample of Wuchang bream no.2_1 | fish gut metagenome | 1602388 | PRJDB3256 | 2012-04-10 | not applicable | not applicable | feces | China:Wuhan, Dongxihu Fish Farm | 30.64 N 114.21 E | Intestinal microbiota diversity of freshwater fish | Megalobrama amblycephala | no.2 | biological replicate 1 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
19 | W2_2 | gut content sample of Wuchang bream no.2_2 | fish gut metagenome | 1602388 | PRJDB3256 | 2012-04-10 | not applicable | not applicable | feces | China:Wuhan, Dongxihu Fish Farm | 30.64 N 114.21 E | Intestinal microbiota diversity of freshwater fish | Megalobrama amblycephala | no.2 | biological replicate 2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
20 | WB_1 | gut mucosa sample of Wuchang bream 1 | fish gut metagenome | 1602388 | PRJDB3256 | 2012-04-10 | not applicable | not applicable | mucus | China:Wuhan, Dongxihu Fish Farm | 30.64 N 114.21 E | Intestinal microbiota diversity of freshwater fish | Megalobrama amblycephala | no.1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
21 | WB_2 | gut mucosa sample of Wuchang bream 2 | fish gut metagenome | 1602388 | PRJDB3256 | 2012-04-10 | not applicable | not applicable | mucus | China:Wuhan, Dongxihu Fish Farm | 30.64 N 114.21 E | Intestinal microbiota diversity of freshwater fish | Megalobrama amblycephala | no.2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
23 | MIMS.me.human-gut | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
24 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | strain | breed | cultivar | isolate | label | biomaterial_provider | *collection_date | *env_biome | *env_feature | *env_material | *geo_loc_name | *lat_lon | *project_name | ref_biomaterial | *host | rel_to_oxygen | samp_collect_device | samp_mat_process | sample_size | source_material_id | age | body_mass_index | body_product | chem_administration | family_relationship | gastrointest_disord | genotype | host_body_site | host_body_temp | host_diet | host_disease_stat | host_height | host_subject_id | ihmc_ethnicity | ihmc_medication_code | last_meal | liver_disord | medic_hist_perform | misc_param | occupation | organism_count | oxy_stat_samp | perturbation | phenotype | pulse | samp_salinity | samp_store_dur | samp_store_loc | samp_store_temp | sex | special_diet | temp | tot_mass | |||||||||||||||||||||||||||||||||||||
25 | patient 1 | gut microbiomes isolated from feces of Japanese patient 1 | human gut metagenome | 408170 | 2017-03-12 | not applicable | not applicable | feces | Japan | missing | Metagenomics of Japanese gut microbiomes | Homo sapiens | patient 1 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
26 | patient 2 | gut microbiomes isolated from feces of Japanese patient 2 | human gut metagenome | 408170 | 2017-03-12 | not applicable | not applicable | feces | Japan | missing | Metagenomics of Japanese gut microbiomes | Homo sapiens | patient 2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
27 | patient 3 | gut microbiomes isolated from feces of Japanese patient 3 | human gut metagenome | 408170 | 2017-03-12 | not applicable | not applicable | feces | Japan | missing | Metagenomics of Japanese gut microbiomes | Homo sapiens | patient 3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
28 | patient 4 | gut microbiomes isolated from feces of Japanese patient 4 | human gut metagenome | 408170 | 2017-03-12 | not applicable | not applicable | feces | Japan | missing | Metagenomics of Japanese gut microbiomes | Homo sapiens | patient 4 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30 | MIMS.me.miscellaneous | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | strain | breed | cultivar | isolate | label | biomaterial_provider | *collection_date | *env_biome | *env_feature | *env_material | *geo_loc_name | *lat_lon | *project_name | ref_biomaterial | rel_to_oxygen | samp_collect_device | samp_mat_process | sample_size | source_material_id | depth | elev | altitude | alkalinity | ammonium | biomass | bromide | calcium | chem_administration | chloride | chlorophyll | current | density | diether_lipids | diss_carb_dioxide | diss_hydrogen | diss_inorg_carb | diss_org_nitro | diss_oxygen | misc_param | nitrate | nitrite | nitro | org_carb | org_matter | org_nitro | organism_count | oxy_stat_samp | perturbation | ph | phosphate | phosplipid_fatt_acid | potassium | pressure | salinity | samp_store_dur | samp_store_loc | samp_store_temp | silicate | sodium | sulfate | sulfide | temp | ||||||||||||||||||||||||||||
32 | Korean fish sauce A-1 | bacterial community of korean fish sauce A-1 | food fermentation metagenome | 1154581 | 2015 | not applicable | not applicable | not applicable | South Korea:Chung-nam | 34.86 N 126.99 E | Bacterial community of Korean fish sauce | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
33 | Korean fish sauce A-2 | bacterial community of korean fish sauce A-2 | food fermentation metagenome | 1154581 | 2015 | not applicable | not applicable | not applicable | South Korea:Chung-nam | 36.51 N 126.79 E | Bacterial community of Korean fish sauce | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
34 | Korean fish sauce A-3 | bacterial community of korean fish sauce A-3 | food fermentation metagenome | 1154581 | 2015 | not applicable | not applicable | not applicable | South Korea:Chung-nam | 36.42 N 126.85 E | Bacterial community of Korean fish sauce | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
36 | MIMS.me.soil | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
37 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | strain | breed | cultivar | isolate | label | biomaterial_provider | *collection_date | *env_biome | *env_feature | *env_material | *geo_loc_name | *lat_lon | *project_name | ref_biomaterial | rel_to_oxygen | samp_collect_device | samp_mat_process | sample_size | source_material_id | *depth | *elev | altitude | agrochem_addition | al_sat | al_sat_meth | annual_season_precpt | annual_season_temp | crop_rotation | cur_land_use | cur_vegetation | cur_vegetation_meth | drainage_class | extreme_event | extreme_salinity | fao_class | fire | flooding | heavy_metals | heavy_metals_meth | horizon | horizon_meth | link_addit_analys | link_class_info | link_climate_info | local_class | local_class_meth | microbial_biomass | microbial_biomass_meth | misc_param | ph | ph_meth | pool_dna_extracts | previous_land_use | previous_land_use_meth | profile_position | salinity_meth | samp_vol_we_dna_ext | sieving | slope_aspect | slope_gradient | soil_type | soil_type_meth | store_cond | texture | texture_meth | tillage | tot_n_meth | tot_nitro | tot_org_c_meth | tot_org_carb | water_content_soil | water_content_soil_meth | ||||||||||||||||||
38 | NF-1 | farm soil with no fertilization spot1 | soil metagenome | 410658 | 2015-05-08 | village biome | farm | farm soil | Japan:Kanagawa, Sagamihara city | 35.557247 N 139.266921 E | structural analysis of microbial community for feild soil and compost made from coffee lees | 0.1m | 230 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
39 | NF-2 | farm soil with no fertilization spot2 | soil metagenome | 410658 | 2015-05-08 | village biome | farm | farm soil | Japan:Kanagawa, Sagamihara city | 35.557247 N 139.266921 E | structural analysis of microbial community for feild soil and compost made from coffee lees | 0.1m | 230 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
40 | FC-1 | farm soil fertilized by coffee compost spot1 | soil metagenome | 410658 | 2015-05-08 | village biome | farm | farm soil | Japan:Kanagawa, Sagamihara city | 35.557247 N 139.266921 E | structural analysis of microbial community for feild soil and compost made from coffee lees | 0.1m | 230 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
41 | FC-2 | farm soil fertilized by coffee compost spot2 | soil metagenome | 410658 | 2015-05-08 | village biome | farm | farm soil | Japan:Kanagawa, Sagamihara city | 35.557247 N 139.266921 E | structural analysis of microbial community for feild soil and compost made from coffee lees | 0.1m | 230 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
42 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
43 | MIMS.me.water | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
44 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | strain | breed | cultivar | isolate | label | biomaterial_provider | *collection_date | *env_biome | *env_feature | *env_material | *geo_loc_name | *lat_lon | *project_name | rel_to_oxygen | samp_collect_device | samp_mat_process | sample_size | *depth | elev | alkalinity | alkyl_diethers | aminopept_act | ammonium | atmospheric_data | bacteria_carb_prod | biomass | bishomohopanol | bromide | calcium | carb_nitro_ratio | chem_administration | chloride | chlorophyll | current | density | diether_lipids | diss_carb_dioxide | diss_hydrogen | diss_inorg_carb | diss_inorg_nitro | diss_inorg_phosp | diss_org_carb | diss_org_nitro | diss_oxygen | glucosidase_act | light_intensity | magnesium | mean_frict_vel | mean_peak_frict_vel | misc_param | n_alkanes | nitrate | nitrite | nitro | org_carb | org_matter | org_nitro | organism_count | oxy_stat_samp | part_org_carb | part_org_nitro | perturbation | petroleum_hydrocarb | ph | phaeopigments | phosphate | phosplipid_fatt_acid | photon_flux | potassium | pressure | primary_prod | redox_potential | salinity | samp_store_dur | samp_store_loc | samp_store_temp | silicate | sodium | soluble_react_phosp | sulfate | sulfide | suspend_part_matter | temp | tidal_stage | tot_depth_water_col | tot_diss_nitro | tot_inorg_nitro | tot_nitro | tot_part_carb | tot_phosp |
45 | Eb | DMS baseline sample in Equatorial Pacific Ocean | marine plankton metagenome | 1874687 | PRJDB3463 | 2012-02-08 | ocean biome | ocean | surface water | Pacific Ocean | 0.0011 N 115.0011 W | A study on microbial functional groups producing a climate related gas in the ocean | 5 m | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
46 | Ep | DMS peak sample in Equatorial Pacific Ocean | marine plankton metagenome | 1874687 | PRJDB3463 | 2012-02-07 | ocean biome | ocean | surface water | Pacific Ocean | 0.0561 N 115.0339 W | A study on microbial functional groups producing a climate related gas in the ocean | 5 m | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
47 | Nb | DMS baseline sample in North Pacific Ocean | marine plankton metagenome | 1874687 | PRJDB3463 | 2011-12-12 | ocean biome | ocean | surface water | Pacific Ocean | 22.9989 N 178.7197 E | A study on microbial functional groups producing a climate related gas in the ocean | 5 m | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
48 | Np | DMS peak sample in North Pacific Ocean | marine plankton metagenome | 1874687 | PRJDB3463 | 2011-12-12 | ocean biome | ocean | surface water | Pacific Ocean | 23.0017 N 177.8061 E | A study on microbial functional groups producing a climate related gas in the ocean | 5 m | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
49 | Sb | DMS baseline sample in South Pacific Ocean | marine plankton metagenome | 1874687 | PRJDB3463 | 2012-01-07 | ocean biome | ocean | surface water | Pacific Ocean | 22.5206 S 119.9997 W | A study on microbial functional groups producing a climate related gas in the ocean | 5 m | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
50 | Sp | DMS peak sample in South Pacific Ocean | marine plankton metagenome | 1874687 | PRJDB3463 | 2012-01-06 | ocean biome | ocean | surface water | Pacific Ocean | 19.9994 S 120.0142 W | A study on microbial functional groups producing a climate related gas in the ocean | 5 m | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
51 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
52 | MIGS.ba | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
53 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | locus_tag_prefix | strain | breed | cultivar | isolate | label | biomaterial_provider | *collection_date | *env_biome | *env_feature | *env_material | *geo_loc_name | *lat_lon | *project_name | *isol_growth_condt | *ref_biomaterial | *num_replicons | estimated_size | biotic_relationship | encoded_traits | extrachrom_elements | health_disease_stat | host | host_spec_range | pathogenicity | rel_to_oxygen | samp_collect_device | samp_mat_process | sample_size | source_material_id | subspecf_gen_lin | trophic_level | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
54 | JCM 9653 | Thermococcus peptonophilus JCM 9653 | Thermococcus peptonophilus OG-1 = JCM 9653 | 523851 | PRJDB786 | JCM9653 | JCM 9653 | JCM | not applicable | not applicable | not applicable | not applicable | not applicable | not applicable | NBRP : Genome information of microbial organism related human and environment | http://www.jcm.riken.jp/cgi-bin/jcm/jcm_number?JCM=9653 | missing | missing | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
55 | NBRC 102024 | Alcanivorax sp. NBRC 102024 | Alcanivorax sp. NBRC 102024 | 1113895 | PRJDB2892 | ALCSP23 | NBRC 102024 | Biological Resource Center, NITE (NBRC) | not applicable | not applicable | not applicable | not applicable | not applicable | not applicable | The NBRC Genome Sequencing Project for Pollutant-degrading bacteria | http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=00102024 | missing | missing | free living | aerobe | heterotroph | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
57 | MIGS.ba.human-gut | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
58 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | locus_tag_prefix | strain | breed | cultivar | isolate | label | biomaterial_provider | *collection_date | *env_biome | *env_feature | *env_material | *geo_loc_name | *lat_lon | *project_name | *isol_growth_condt | *ref_biomaterial | *num_replicons | estimated_size | biotic_relationship | encoded_traits | extrachrom_elements | health_disease_stat | *host | host_spec_range | pathogenicity | rel_to_oxygen | samp_collect_device | samp_mat_process | sample_size | source_material_id | subspecf_gen_lin | trophic_level | age | body_mass_index | body_product | chem_administration | family_relationship | gastrointest_disord | genotype | host_body_site | host_body_temp | host_diet | host_disease_stat | host_height | host_subject_id | ihmc_ethnicity | ihmc_medication_code | last_meal | liver_disord | medic_hist_perform | misc_param | occupation | organism_count | oxy_stat_samp | perturbation | phenotype | pulse | samp_salinity | samp_store_dur | samp_store_loc | samp_store_temp | sex | special_diet | temp | tot_mass | |||||||||||||||||||||||||
59 | Clostridium botulinum type B strain 111_delta2 | Clostridium botulinum | 1491 | PRJDB3402 | 111 | 2014-12-01 | not applicable | not applicable | feces | Japan | not applicable | whole genome sequence, Clostridium botulinum type B strain 111_delta2 | 9230406 | 8942019 | 1 | 3.9 Mb | Homo sapiens | botulism | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
60 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
61 | MIGS.ba.soil | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
62 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | locus_tag_prefix | strain | breed | cultivar | isolate | label | biomaterial_provider | *collection_date | *env_biome | *env_feature | *env_material | *geo_loc_name | *lat_lon | *project_name | *isol_growth_condt | *ref_biomaterial | *num_replicons | estimated_size | biotic_relationship | encoded_traits | extrachrom_elements | health_disease_stat | host | host_spec_range | pathogenicity | rel_to_oxygen | samp_collect_device | samp_mat_process | sample_size | source_material_id | subspecf_gen_lin | trophic_level | *depth | *elev | altitude | agrochem_addition | al_sat | al_sat_meth | annual_season_precpt | annual_season_temp | crop_rotation | cur_land_use | cur_vegetation | cur_vegetation_meth | drainage_class | extreme_event | extreme_salinity | fao_class | fire | flooding | heavy_metals | heavy_metals_meth | horizon | horizon_meth | link_addit_analys | link_class_info | link_climate_info | local_class | local_class_meth | microbial_biomass | microbial_biomass_meth | misc_param | ph | ph_meth | pool_dna_extracts | previous_land_use | previous_land_use_meth | profile_position | salinity_meth | samp_vol_we_dna_ext | sieving | slope_aspect | slope_gradient | soil_type | soil_type_meth | store_cond | texture | texture_meth | tillage | tot_n_meth | tot_nitro | tot_org_c_meth | tot_org_carb | water_content_soil | water_content_soil_meth | |||||
63 | KOME-1 | high quality draft genome of strain KOME-1 | Longilinea arvoryzae | 360412 | PRJDB4023 | LARV | KOME-1 | 2013 | cropland biome | paddy field | paddy field soil | Japan:Niigata, Nagaoka | missing | Genome analysis of Anaerolineaceae species | 17911301 | 17911301 | missing | 0.10 m | 60 m | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
64 | KOME-2 | high quality draft genome of strain KOME-2 | Longilinea arvoryzae | 360412 | PRJDB4023 | LARW | KOME-2 | 2013 | cropland biome | paddy field | paddy field soil | Japan:Niigata, Nagaoka | missing | Genome analysis of Anaerolineaceae species | 17911301 | 17911301 | missing | 0.10 m | 60 m | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
65 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
66 | MIGS.ba.wastewater | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
67 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | locus_tag_prefix | strain | breed | cultivar | isolate | label | biomaterial_provider | *collection_date | *env_biome | *env_feature | *env_material | *geo_loc_name | *lat_lon | *project_name | *isol_growth_condt | *ref_biomaterial | *num_replicons | estimated_size | biotic_relationship | encoded_traits | extrachrom_elements | health_disease_stat | host | host_spec_range | pathogenicity | rel_to_oxygen | samp_collect_device | samp_mat_process | sample_size | source_material_id | subspecf_gen_lin | trophic_level | depth | alkalinity | biochem_oxygen_dem | chem_administration | chem_oxygen_dem | efficiency_percent | emulsions | gaseous_substances | indust_eff_percent | inorg_particles | misc_param | nitrate | org_particles | organism_count | oxy_stat_samp | perturbation | ph | phosphate | pre_treatment | primary_treatment | reactor_type | samp_salinity | samp_store_dur | samp_store_loc | samp_store_temp | secondary_treatment | sewage_type | sludge_retent_time | sodium | soluble_inorg_mat | soluble_org_mat | suspend_solids | temp | tertiary_treatment | tot_nitro | tot_phosphate | wastewater_type | |||||||||||||||||||||
68 | Alicycliphilus sp. | Alicycliphilus sp. B1 isolated from activated sludge | Alicycliphilus sp. B1 | 1603291 | PRJDB3450 | ALISP | B1 | 2016 | missing | industrial wastewate treatment plant | activated sludge | Japan:Tochigi | missing | Genome sequence of bacterial isolate from activated sludge | missing | missing | 1 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
69 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
70 | MIGS.eu | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
71 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | locus_tag_prefix | strain | breed | cultivar | isolate | label | biomaterial_provider | *collection_date | *env_biome | *env_feature | *env_material | *geo_loc_name | *lat_lon | *project_name | *isol_growth_condt | ref_biomaterial | *num_replicons | *estimated_size | *ploidy | *propagation | biotic_relationship | extrachrom_elements | health_disease_stat | host | host_spec_range | pathogenicity | samp_collect_device | samp_mat_process | sample_size | source_material_id | subspecf_gen_lin | trophic_level | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
72 | Nipponbare WT-1-PG0219 | Oryza sativa L. ssp. japonica cv. Nipponbare WT-1-PG0219 | Oryza sativa Japonica Group | 39947 | Nipponbare | 2013-06 | cropland biome | paddy field | not applicable | Japan:Niigata | 37.11 N 138.27 E | Comparative analysis of transformed and wild-type rice genome. | 17372735 | 12 | 380000000 bp | diploid | sexual | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
73 | Nipponbare WT-1-PG0361 | Oryza sativa L. ssp. japonica cv. Nipponbare WT-1-PG0361 | Oryza sativa Japonica Group | 39947 | Nipponbare | 2013-06 | cropland biome | paddy field | not applicable | Japan:Niigata | 37.11 N 138.27 E | Comparative analysis of transformed and wild-type rice genome. | 17372735 | 12 | 380000000 bp | diploid | sexual | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
74 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
75 | MIGS.eu.plant-associated | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
76 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | locus_tag_prefix | strain | breed | cultivar | isolate | label | biomaterial_provider | *collection_date | *env_biome | *env_feature | *env_material | *geo_loc_name | *lat_lon | *project_name | *isol_growth_condt | ref_biomaterial | *num_replicons | *estimated_size | *ploidy | *propagation | biotic_relationship | extrachrom_elements | health_disease_stat | *host | host_spec_range | pathogenicity | samp_collect_device | samp_mat_process | sample_size | source_material_id | subspecf_gen_lin | trophic_level | depth | elev | altitude | age | air_temp_regm | antibiotic_regm | body_product | chem_administration | chem_mutagen | climate_environment | dry_mass | fertilizer_regm | fungicide_regm | gaseous_environment | genotype | gravity | growth_hormone_regm | growth_med | height_or_length | herbicide_regm | host_common_name | host_disease_stat | host_taxid | humidity_regm | infra_specific_name | infra_specific_rank | life_stage | mechanical_damage | mineral_nutr_regm | misc_param | non_mineral_nutr_regm | organism_count | oxy_stat_samp | perturbation | pesticide_regm | ph_regm | phenotype | plant_body_site | plant_product | radiation_regm | rainfall_regm | salt_regm | samp_salinity | samp_store_dur | samp_store_loc | samp_store_temp | season_environment | standing_water_regm | temp | tiss_cult_growth_med | tot_mass | water_temp_regm | watering_regm | wet_mass | ||||
77 | IPU010 | Ustilaginoidea virens Takahashi IPU010 | Ustilaginoidea virens | 1159556 | UVI | IPU010 | National Institute of Agrobiological Sciences, Japan | missing | cropland biome | agricultural terrace | missing | Japan:Shiga | not collected | Ustilaginoidea virens Takahashi IPU010 genome project | missing | missing | 31446769 bp | missing | missing | Oryza sativa Indica group | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
78 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
79 | MIGS.vi.human-associated | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
80 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | strain | breed | cultivar | isolate | label | biomaterial_provider | *collection_date | *env_biome | *env_feature | *env_material | *geo_loc_name | *lat_lon | *project_name | *isol_growth_condt | ref_biomaterial | num_replicons | estimated_size | *propagation | biotic_relationship | encoded_traits | health_disease_stat | *host | host_spec_range | pathogenicity | samp_collect_device | samp_mat_process | sample_size | source_material_id | subspecf_gen_lin | age | amniotic_fluid_color | blood_blood_disord | body_mass_index | body_product | chem_administration | diet_last_six_month | drug_usage | family_relationship | foetal_health_stat | genotype | gestation_state | hiv_stat | host_body_site | host_body_temp | host_diet | host_disease_stat | host_height | host_subject_id | ihmc_ethnicity | ihmc_medication_code | kidney_disord | last_meal | maternal_health_stat | medic_hist_perform | misc_param | nose_throat_disord | occupation | organism_count | oxy_stat_samp | perturbation | pet_farm_animal | phenotype | pulmonary_disord | pulse | samp_salinity | samp_store_dur | samp_store_loc | samp_store_temp | sex | smoker | study_complt_stat | temp | tot_mass | travel_out_six_month | twin_sibling | urine_collect_meth | urogenit_tract_disor | weight_loss_3_month | ||||||||||||
81 | 0001_indonesia_control | Dengue virus from Control sample | LAMP product sequneces of the four dengue serotypes | Dengue virus | 12637 | 2012/2015 | missing | missing | blood | Indonesia | missing | Serotyping Dengue virus using an isothermal amplification and a portable sequencer | missing | 1 | 11k | missing | healthy | Homo sapiens | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
82 | 0002_indonesia_single_sample | Dengue virus from Indonesian single clinical sample | LAMP product sequneces of the Indonesian clinical samples | Dengue virus | 12637 | 2012/2015 | missing | missing | blood | Indonesia | missing | Serotyping Dengue virus using an isothermal amplification and a portable sequencer | missing | 1 | 11k | missing | fever | Homo sapiens | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
83 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
84 | MIMARKS.specimen | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
85 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | strain | breed | cultivar | isolate | label | biomaterial_provider | *collection_date | *env_biome | *env_feature | *env_material | *geo_loc_name | *lat_lon | *project_name | *isol_growth_condt | biotic_relationship | extrachrom_elements | rel_to_oxygen | samp_collect_device | samp_mat_process | sample_size | source_material_id | subspecf_gen_lin | trophic_level | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
86 | StAf_01 | Strobilomyces confusus E38 | Strobilomyces confusus | 374762 | PRJDB4146 | E38 | 2004-08-15 | temperate woodland biome | forest | not applicable | USA: New Jersey | 40.0 N 74.83 W | Diversification analysis of Strobilomyces and Afroboletus | not provided | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
87 | StAf_02 | Strobilomyces pterosporus E52 | MycoBank ID: 112101 | Afroboletus pterosporus | 1712121 | PRJDB4146 | E52 | 1978-06-06 | tropical woodland biome | forest | not applicable | Nigeria | 7.5 N 4.56 E | Diversification analysis of Strobilomyces and Afroboletus | not provided | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
88 | StAf_03 | Strobilomyces luteolus K2 | Strobilomyces luteolus | 1611890 | PRJDB4146 | K2 | 1976-01 | tropical woodland biome | forest | not applicable | Zimbabwe | 17.81 S 31.05 E | Diversification analysis of Strobilomyces and Afroboletus | not provided | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
89 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
90 | MIMARKS.survey.host-associated | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
91 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | strain | breed | cultivar | isolate | label | biomaterial_provider | *collection_date | *env_biome | *env_feature | *env_material | *geo_loc_name | *lat_lon | *project_name | *host | rel_to_oxygen | samp_collect_device | samp_mat_process | sample_size | depth | elev | altitude | age | blood_press_diast | blood_press_syst | body_habitat | body_product | chem_administration | dry_mass | family_relationship | genotype | gravidity | height_or_length | host_body_site | host_body_temp | host_color | host_common_name | host_diet | host_disease_stat | host_growth_cond | host_shape | host_subject_id | host_taxid | infra_specific_name | infra_specific_rank | last_meal | life_stage | misc_param | organism_count | oxy_stat_samp | perturbation | phenotype | samp_salinity | samp_store_dur | samp_store_loc | samp_store_temp | sex | substrate | temp | tot_mass | host_sex | ||||||||||||||||||||||||||||||
92 | D14F1 | Fecal sample from intestinal epithelial cell-specific alpha-mannosidase II deficient mouse F1 | mouse gut metagenome | 410661 | 2016-08-09 | not applicable | not applicable | feces | not applicable | not applicable | 16S amplicon sequence analysis of gut microbiome in intestinal epithelial cell-specific alpha-mannosidase II deficient mice | Mus musculus | F1 | female | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
93 | D14F3 | Fecal sample from control mouse F3 | mouse gut metagenome | 410661 | 2016-08-09 | not applicable | not applicable | feces | not applicable | not applicable | 16S amplicon sequence analysis of gut microbiome in intestinal epithelial cell-specific alpha-mannosidase II deficient mice | Mus musculus | F3 | female | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
94 | D14M1 | Fecal sample from control mouse M1 | mouse gut metagenome | 410661 | 2016-08-09 | not applicable | not applicable | feces | not applicable | not applicable | 16S amplicon sequence analysis of gut microbiome in intestinal epithelial cell-specific alpha-mannosidase II deficient mice | Mus musculus | M1 | male | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
95 | D14M2 | Fecal sample from intestinal epithelial cell-specific alpha-mannosidase II deficient mouse M2 | mouse gut metagenome | 410661 | 2016-08-09 | not applicable | not applicable | feces | not applicable | not applicable | 16S amplicon sequence analysis of gut microbiome in intestinal epithelial cell-specific alpha-mannosidase II deficient mice | Mus musculus | M2 | male | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
96 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
97 | MIMARKS.survey.human-associated | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
98 | *sample_name | *sample_title | description | *organism | taxonomy_id | bioproject_id | strain | breed | cultivar | isolate | label | biomaterial_provider | *collection_date | *env_biome | *env_feature | *env_material | *geo_loc_name | *lat_lon | *project_name | *host | rel_to_oxygen | samp_collect_device | samp_mat_process | sample_size | age | amniotic_fluid_color | blood_blood_disord | body_mass_index | body_product | chem_administration | diet_last_six_month | drug_usage | family_relationship | foetal_health_stat | genotype | gestation_state | hiv_stat | host_body_site | host_body_temp | host_diet | host_disease_stat | host_height | host_subject_id | ihmc_ethnicity | ihmc_medication_code | kidney_disord | last_meal | maternal_health_stat | medic_hist_perform | misc_param | nose_throat_disord | occupation | organism_count | oxy_stat_samp | perturbation | pet_farm_animal | phenotype | pulmonary_disord | pulse | samp_salinity | samp_store_dur | samp_store_loc | samp_store_temp | sex | smoker | study_complt_stat | temp | tot_mass | travel_out_six_month | twin_sibling | urine_collect_meth | urogenit_tract_disor | weight_loss_3_month | |||||||||||||||||||||||
99 | C1 | 16S rRNA genes amplified from genomic DNA isolated from tear fluid of healthy subject (C1) | human metagenome | 646099 | PRJDB3940 | 2009 | not applicable | not applicable | tears | Japan:Tokyo, Minato-ku | 35.65 N 139.74 E | Comprehensive analysis of microbes in human tear fluids | Homo sapiens | healthy | C1 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
100 | C2 | 16S rRNA genes amplified from genomic DNA isolated from tear fluid of healthy subject (C2) | human metagenome | 646099 | PRJDB3940 | 2009 | not applicable | not applicable | tears | Japan:Tokyo, Minato-ku | 35.65 N 139.74 E | Comprehensive analysis of microbes in human tear fluids | Homo sapiens | healthy | C2 |