BioSample Examples

	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P	Q	R	S	T	U	V	W	X	Y	Z	AA	AB	AC	AD	AE	AF	AG	AH	AI	AJ	AK	AL	AM	AN	AO	AP	AQ	AR	AS	AT	AU	AV	AW	AX	AY	AZ	BA	BB	BC	BD	BE	BF	BG	BH	BI	BJ	BK	BL	BM	BN	BO	BP	BQ	BR	BS	BT	BU	BV	BW	BX	BY	BZ	CA	CB	CC	CD	CE	CF	CG	CH	CI	CJ	CK	CL	CM	CN	CO	CP	CQ	CR
1	Omics
2	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	strain	breed	cultivar	isolate	ecotype	biological_replicate	technical_replicate	antibody	biomaterial_provider	*collection_date	*geo_loc_name	lat_lon	age	cell_line	cell_type	chem_administration	clinical_history	compound	culture_collection	dev_stage	diet	disease	disease_stage	dose	fraction	genetic_modification	genotype	growth_condition	growth_protocol	infection	isolation_source	karyotype	passage_history	phenotype	sample_type	sex	specimen_voucher	stimulus	stress	temp	time	tissue	treatment
3	Arabidopsis control for heat stress rep 1	Arabidopsis control for heat stress rep 1	Arabidopsis control for heat stress, biological replicate 1	Arabidopsis thaliana	3702						Col-0	1				2016-10-01	missing: lab stock		9 days																											22 degrees C		leaf
4	Arabidopsis control for heat stress rep 2	Arabidopsis control for heat stress rep 2	Arabidopsis control for heat stress, biological replicate 2	Arabidopsis thaliana	3702						Col-0	2				2016-10-01	missing: lab stock		9 days																											22 degrees C		leaf
5	Arabidopsis heat stress rep 1	Arabidopsis heat stress rep 1	Arabidopsis heat stress, biological replicate 1	Arabidopsis thaliana	3702						Col-0	1				2016-10-01	missing: lab stock		9 days																											37 degrees C	10	leaf
6	Arabidopsis heat stress rep 2	Arabidopsis heat stress rep 2	Arabidopsis heat stress, biological replicate 2	Arabidopsis thaliana	3702						Col-0	2				2016-10-01	missing: lab stock		9 days																											37 degrees C	10	leaf
7
8	MIMS.me.host-associated
9	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	strain	breed	cultivar	isolate	label	biomaterial_provider	*collection_date	*env_biome	*env_feature	*env_material	*geo_loc_name	*lat_lon	*project_name	ref_biomaterial	*host	rel_to_oxygen	samp_collect_device	samp_mat_process	sample_size	source_material_id	depth	elev	altitude	age	blood_press_diast	blood_press_syst	body_habitat	body_product	chem_administration	dry_mass	family_relationship	genotype	gravidity	height_or_length	host_body_site	host_body_temp	host_color	host_common_name	host_diet	host_disease_stat	host_growth_cond	host_shape	host_subject_id	host_taxid	infra_specific_name	infra_specific_rank	last_meal	life_stage	misc_param	organism_count	oxy_stat_samp	perturbation	phenotype	samp_salinity	samp_store_dur	samp_store_loc	samp_store_temp	sex	substrate	temp	tot_mass	replicate
10	L1_1	gut content sample of silver carp no.1_1		fish gut metagenome	1602388	PRJDB3256							2012-04-10	not applicable	not applicable	feces	China:Wuhan, Dongxihu Fish Farm	30.64 N 114.21 E	Intestinal microbiota diversity of freshwater fish		Hypophthalmichthys molitrix																												no.1																			biological replicate 1
11	L1_2	gut content sample of silver carp no.1_2		fish gut metagenome	1602388	PRJDB3256							2012-04-10	not applicable	not applicable	feces	China:Wuhan, Dongxihu Fish Farm	30.64 N 114.21 E	Intestinal microbiota diversity of freshwater fish		Hypophthalmichthys molitrix																												no.1																			biological replicate 2
12	L2_1	gut content sample of silver carp no.2_1		fish gut metagenome	1602388	PRJDB3256							2012-04-10	not applicable	not applicable	feces	China:Wuhan, Dongxihu Fish Farm	30.64 N 114.21 E	Intestinal microbiota diversity of freshwater fish		Hypophthalmichthys molitrix																												no.2																			biological replicate 1
13	L2_2	gut content sample of silver carp no.2_2		fish gut metagenome	1602388	PRJDB3256							2012-04-10	not applicable	not applicable	feces	China:Wuhan, Dongxihu Fish Farm	30.64 N 114.21 E	Intestinal microbiota diversity of freshwater fish		Hypophthalmichthys molitrix																												no.2																			biological replicate 2
14	LB_1	gut mucosa sample of silver carp 1		fish gut metagenome	1602388	PRJDB3256							2012-04-10	not applicable	not applicable	mucus	China:Wuhan, Dongxihu Fish Farm	30.64 N 114.21 E	Intestinal microbiota diversity of freshwater fish		Hypophthalmichthys molitrix																												no.1
15	LB_2	gut mucosa sample of silver carp 2		fish gut metagenome	1602388	PRJDB3256							2012-04-10	not applicable	not applicable	mucus	China:Wuhan, Dongxihu Fish Farm	30.64 N 114.21 E	Intestinal microbiota diversity of freshwater fish		Hypophthalmichthys molitrix																												no.2
16	W1_1	gut content sample of Wuchang bream no.1_1		fish gut metagenome	1602388	PRJDB3256							2012-04-10	not applicable	not applicable	feces	China:Wuhan, Dongxihu Fish Farm	30.64 N 114.21 E	Intestinal microbiota diversity of freshwater fish		Megalobrama amblycephala																												no.1																			biological replicate 1
17	W1_2	gut content sample of Wuchang bream no.1_2		fish gut metagenome	1602388	PRJDB3256							2012-04-10	not applicable	not applicable	feces	China:Wuhan, Dongxihu Fish Farm	30.64 N 114.21 E	Intestinal microbiota diversity of freshwater fish		Megalobrama amblycephala																												no.1																			biological replicate 2
18	W2_1	gut content sample of Wuchang bream no.2_1		fish gut metagenome	1602388	PRJDB3256							2012-04-10	not applicable	not applicable	feces	China:Wuhan, Dongxihu Fish Farm	30.64 N 114.21 E	Intestinal microbiota diversity of freshwater fish		Megalobrama amblycephala																												no.2																			biological replicate 1
19	W2_2	gut content sample of Wuchang bream no.2_2		fish gut metagenome	1602388	PRJDB3256							2012-04-10	not applicable	not applicable	feces	China:Wuhan, Dongxihu Fish Farm	30.64 N 114.21 E	Intestinal microbiota diversity of freshwater fish		Megalobrama amblycephala																												no.2																			biological replicate 2
20	WB_1	gut mucosa sample of Wuchang bream 1		fish gut metagenome	1602388	PRJDB3256							2012-04-10	not applicable	not applicable	mucus	China:Wuhan, Dongxihu Fish Farm	30.64 N 114.21 E	Intestinal microbiota diversity of freshwater fish		Megalobrama amblycephala																												no.1
21	WB_2	gut mucosa sample of Wuchang bream 2		fish gut metagenome	1602388	PRJDB3256							2012-04-10	not applicable	not applicable	mucus	China:Wuhan, Dongxihu Fish Farm	30.64 N 114.21 E	Intestinal microbiota diversity of freshwater fish		Megalobrama amblycephala																												no.2
22
23	MIMS.me.human-gut
24	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	strain	breed	cultivar	isolate	label	biomaterial_provider	*collection_date	*env_biome	*env_feature	*env_material	*geo_loc_name	*lat_lon	*project_name	ref_biomaterial	*host	rel_to_oxygen	samp_collect_device	samp_mat_process	sample_size	source_material_id	age	body_mass_index	body_product	chem_administration	family_relationship	gastrointest_disord	genotype	host_body_site	host_body_temp	host_diet	host_disease_stat	host_height	host_subject_id	ihmc_ethnicity	ihmc_medication_code	last_meal	liver_disord	medic_hist_perform	misc_param	occupation	organism_count	oxy_stat_samp	perturbation	phenotype	pulse	samp_salinity	samp_store_dur	samp_store_loc	samp_store_temp	sex	special_diet	temp	tot_mass
25	patient 1	gut microbiomes isolated from feces of Japanese patient 1		human gut metagenome	408170								2017-03-12	not applicable	not applicable	feces	Japan	missing	Metagenomics of Japanese gut microbiomes		Homo sapiens																		patient 1
26	patient 2	gut microbiomes isolated from feces of Japanese patient 2		human gut metagenome	408170								2017-03-12	not applicable	not applicable	feces	Japan	missing	Metagenomics of Japanese gut microbiomes		Homo sapiens																		patient 2
27	patient 3	gut microbiomes isolated from feces of Japanese patient 3		human gut metagenome	408170								2017-03-12	not applicable	not applicable	feces	Japan	missing	Metagenomics of Japanese gut microbiomes		Homo sapiens																		patient 3
28	patient 4	gut microbiomes isolated from feces of Japanese patient 4		human gut metagenome	408170								2017-03-12	not applicable	not applicable	feces	Japan	missing	Metagenomics of Japanese gut microbiomes		Homo sapiens																		patient 4
29
30	MIMS.me.miscellaneous
31	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	strain	breed	cultivar	isolate	label	biomaterial_provider	*collection_date	*env_biome	*env_feature	*env_material	*geo_loc_name	*lat_lon	*project_name	ref_biomaterial	rel_to_oxygen	samp_collect_device	samp_mat_process	sample_size	source_material_id	depth	elev	altitude	alkalinity	ammonium	biomass	bromide	calcium	chem_administration	chloride	chlorophyll	current	density	diether_lipids	diss_carb_dioxide	diss_hydrogen	diss_inorg_carb	diss_org_nitro	diss_oxygen	misc_param	nitrate	nitrite	nitro	org_carb	org_matter	org_nitro	organism_count	oxy_stat_samp	perturbation	ph	phosphate	phosplipid_fatt_acid	potassium	pressure	salinity	samp_store_dur	samp_store_loc	samp_store_temp	silicate	sodium	sulfate	sulfide	temp
32	Korean fish sauce A-1	bacterial community of korean fish sauce A-1		food fermentation metagenome	1154581								2015	not applicable	not applicable	not applicable	South Korea:Chung-nam	34.86 N 126.99 E	Bacterial community of Korean fish sauce
33	Korean fish sauce A-2	bacterial community of korean fish sauce A-2		food fermentation metagenome	1154581								2015	not applicable	not applicable	not applicable	South Korea:Chung-nam	36.51 N 126.79 E	Bacterial community of Korean fish sauce
34	Korean fish sauce A-3	bacterial community of korean fish sauce A-3		food fermentation metagenome	1154581								2015	not applicable	not applicable	not applicable	South Korea:Chung-nam	36.42 N 126.85 E	Bacterial community of Korean fish sauce
35
36	MIMS.me.soil
37	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	strain	breed	cultivar	isolate	label	biomaterial_provider	*collection_date	*env_biome	*env_feature	*env_material	*geo_loc_name	*lat_lon	*project_name	ref_biomaterial	rel_to_oxygen	samp_collect_device	samp_mat_process	sample_size	source_material_id	*depth	*elev	altitude	agrochem_addition	al_sat	al_sat_meth	annual_season_precpt	annual_season_temp	crop_rotation	cur_land_use	cur_vegetation	cur_vegetation_meth	drainage_class	extreme_event	extreme_salinity	fao_class	fire	flooding	heavy_metals	heavy_metals_meth	horizon	horizon_meth	link_addit_analys	link_class_info	link_climate_info	local_class	local_class_meth	microbial_biomass	microbial_biomass_meth	misc_param	ph	ph_meth	pool_dna_extracts	previous_land_use	previous_land_use_meth	profile_position	salinity_meth	samp_vol_we_dna_ext	sieving	slope_aspect	slope_gradient	soil_type	soil_type_meth	store_cond	texture	texture_meth	tillage	tot_n_meth	tot_nitro	tot_org_c_meth	tot_org_carb	water_content_soil	water_content_soil_meth
38	NF-1	farm soil with no fertilization spot1		soil metagenome	410658								2015-05-08	village biome	farm	farm soil	Japan:Kanagawa, Sagamihara city	35.557247 N 139.266921 E	structural analysis of microbial community for feild soil and compost made from coffee lees							0.1m	230
39	NF-2	farm soil with no fertilization spot2		soil metagenome	410658								2015-05-08	village biome	farm	farm soil	Japan:Kanagawa, Sagamihara city	35.557247 N 139.266921 E	structural analysis of microbial community for feild soil and compost made from coffee lees							0.1m	230
40	FC-1	farm soil fertilized by coffee compost spot1		soil metagenome	410658								2015-05-08	village biome	farm	farm soil	Japan:Kanagawa, Sagamihara city	35.557247 N 139.266921 E	structural analysis of microbial community for feild soil and compost made from coffee lees							0.1m	230
41	FC-2	farm soil fertilized by coffee compost spot2		soil metagenome	410658								2015-05-08	village biome	farm	farm soil	Japan:Kanagawa, Sagamihara city	35.557247 N 139.266921 E	structural analysis of microbial community for feild soil and compost made from coffee lees							0.1m	230
42
43	MIMS.me.water
44	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	strain	breed	cultivar	isolate	label	biomaterial_provider	*collection_date	*env_biome	*env_feature	*env_material	*geo_loc_name	*lat_lon	*project_name	rel_to_oxygen	samp_collect_device	samp_mat_process	sample_size	*depth	elev	alkalinity	alkyl_diethers	aminopept_act	ammonium	atmospheric_data	bacteria_carb_prod	biomass	bishomohopanol	bromide	calcium	carb_nitro_ratio	chem_administration	chloride	chlorophyll	current	density	diether_lipids	diss_carb_dioxide	diss_hydrogen	diss_inorg_carb	diss_inorg_nitro	diss_inorg_phosp	diss_org_carb	diss_org_nitro	diss_oxygen	glucosidase_act	light_intensity	magnesium	mean_frict_vel	mean_peak_frict_vel	misc_param	n_alkanes	nitrate	nitrite	nitro	org_carb	org_matter	org_nitro	organism_count	oxy_stat_samp	part_org_carb	part_org_nitro	perturbation	petroleum_hydrocarb	ph	phaeopigments	phosphate	phosplipid_fatt_acid	photon_flux	potassium	pressure	primary_prod	redox_potential	salinity	samp_store_dur	samp_store_loc	samp_store_temp	silicate	sodium	soluble_react_phosp	sulfate	sulfide	suspend_part_matter	temp	tidal_stage	tot_depth_water_col	tot_diss_nitro	tot_inorg_nitro	tot_nitro	tot_part_carb	tot_phosp
45	Eb	DMS baseline sample in Equatorial Pacific Ocean		marine plankton metagenome	1874687	PRJDB3463							2012-02-08	ocean biome	ocean	surface water	Pacific Ocean	0.0011 N 115.0011 W	A study on microbial functional groups producing a climate related gas in the ocean					5 m
46	Ep	DMS peak sample in Equatorial Pacific Ocean		marine plankton metagenome	1874687	PRJDB3463							2012-02-07	ocean biome	ocean	surface water	Pacific Ocean	0.0561 N 115.0339 W	A study on microbial functional groups producing a climate related gas in the ocean					5 m
47	Nb	DMS baseline sample in North Pacific Ocean		marine plankton metagenome	1874687	PRJDB3463							2011-12-12	ocean biome	ocean	surface water	Pacific Ocean	22.9989 N 178.7197 E	A study on microbial functional groups producing a climate related gas in the ocean					5 m
48	Np	DMS peak sample in North Pacific Ocean		marine plankton metagenome	1874687	PRJDB3463							2011-12-12	ocean biome	ocean	surface water	Pacific Ocean	23.0017 N 177.8061 E	A study on microbial functional groups producing a climate related gas in the ocean					5 m
49	Sb	DMS baseline sample in South Pacific Ocean		marine plankton metagenome	1874687	PRJDB3463							2012-01-07	ocean biome	ocean	surface water	Pacific Ocean	22.5206 S 119.9997 W	A study on microbial functional groups producing a climate related gas in the ocean					5 m
50	Sp	DMS peak sample in South Pacific Ocean		marine plankton metagenome	1874687	PRJDB3463							2012-01-06	ocean biome	ocean	surface water	Pacific Ocean	19.9994 S 120.0142 W	A study on microbial functional groups producing a climate related gas in the ocean					5 m
51
52	MIGS.ba
53	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	locus_tag_prefix	strain	breed	cultivar	isolate	label	biomaterial_provider	*collection_date	*env_biome	*env_feature	*env_material	*geo_loc_name	*lat_lon	*project_name	*isol_growth_condt	*ref_biomaterial	*num_replicons	estimated_size	biotic_relationship	encoded_traits	extrachrom_elements	health_disease_stat	host	host_spec_range	pathogenicity	rel_to_oxygen	samp_collect_device	samp_mat_process	sample_size	source_material_id	subspecf_gen_lin	trophic_level
54	JCM 9653	Thermococcus peptonophilus JCM 9653		Thermococcus peptonophilus OG-1 = JCM 9653	523851	PRJDB786	JCM9653	JCM 9653					JCM	1995	not applicable	not applicable	not applicable	Pacific Ocean	not applicable	NBRP : Genome information of microbial organism related human and environment	http://www.jcm.riken.jp/cgi-bin/jcm/jcm_number?JCM=9653	missing	missing
55	NBRC 102024	Alcanivorax sp. NBRC 102024		Alcanivorax sp. NBRC 102024	1113895	PRJDB2892	ALCSP23	NBRC 102024					Biological Resource Center, NITE (NBRC)	2006	not applicable	not applicable	not applicable	Japan:Kanagawa, Miura, Aburatsubo	not applicable	The NBRC Genome Sequencing Project for Pollutant-degrading bacteria	http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=00102024	missing	missing		free living							aerobe						heterotroph
56
57	MIGS.ba.human-gut
58	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	locus_tag_prefix	strain	breed	cultivar	isolate	label	biomaterial_provider	*collection_date	*env_biome	*env_feature	*env_material	*geo_loc_name	*lat_lon	*project_name	*isol_growth_condt	*ref_biomaterial	*num_replicons	estimated_size	biotic_relationship	encoded_traits	extrachrom_elements	health_disease_stat	*host	host_spec_range	pathogenicity	rel_to_oxygen	samp_collect_device	samp_mat_process	sample_size	source_material_id	subspecf_gen_lin	trophic_level	age	body_mass_index	body_product	chem_administration	family_relationship	gastrointest_disord	genotype	host_body_site	host_body_temp	host_diet	host_disease_stat	host_height	host_subject_id	ihmc_ethnicity	ihmc_medication_code	last_meal	liver_disord	medic_hist_perform	misc_param	occupation	organism_count	oxy_stat_samp	perturbation	phenotype	pulse	samp_salinity	samp_store_dur	samp_store_loc	samp_store_temp	sex	special_diet	temp	tot_mass
59	Clostridium botulinum type B strain 111_delta2			Clostridium botulinum	1491	PRJDB3402		111						2014-12-01	not applicable	not applicable	feces	Japan	not applicable	whole genome sequence, Clostridium botulinum type B strain 111_delta2	9230406	8942019	1	3.9 Mb					Homo sapiens		botulism
60
61	MIGS.ba.soil
62	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	locus_tag_prefix	strain	breed	cultivar	isolate	label	biomaterial_provider	*collection_date	*env_biome	*env_feature	*env_material	*geo_loc_name	*lat_lon	*project_name	*isol_growth_condt	*ref_biomaterial	*num_replicons	estimated_size	biotic_relationship	encoded_traits	extrachrom_elements	health_disease_stat	host	host_spec_range	pathogenicity	rel_to_oxygen	samp_collect_device	samp_mat_process	sample_size	source_material_id	subspecf_gen_lin	trophic_level	*depth	*elev	altitude	agrochem_addition	al_sat	al_sat_meth	annual_season_precpt	annual_season_temp	crop_rotation	cur_land_use	cur_vegetation	cur_vegetation_meth	drainage_class	extreme_event	extreme_salinity	fao_class	fire	flooding	heavy_metals	heavy_metals_meth	horizon	horizon_meth	link_addit_analys	link_class_info	link_climate_info	local_class	local_class_meth	microbial_biomass	microbial_biomass_meth	misc_param	ph	ph_meth	pool_dna_extracts	previous_land_use	previous_land_use_meth	profile_position	salinity_meth	samp_vol_we_dna_ext	sieving	slope_aspect	slope_gradient	soil_type	soil_type_meth	store_cond	texture	texture_meth	tillage	tot_n_meth	tot_nitro	tot_org_c_meth	tot_org_carb	water_content_soil	water_content_soil_meth
63	KOME-1	high quality draft genome of strain KOME-1		Longilinea arvoryzae	360412	PRJDB4023	LARV	KOME-1						2013	cropland biome	paddy field	paddy field soil	Japan:Niigata, Nagaoka	missing	Genome analysis of Anaerolineaceae species	17911301	17911301	missing																0.10 m	60 m
64	KOME-2	high quality draft genome of strain KOME-2		Longilinea arvoryzae	360412	PRJDB4023	LARW	KOME-2						2013	cropland biome	paddy field	paddy field soil	Japan:Niigata, Nagaoka	missing	Genome analysis of Anaerolineaceae species	17911301	17911301	missing																0.10 m	60 m
65
66	MIGS.ba.wastewater
67	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	locus_tag_prefix	strain	breed	cultivar	isolate	label	biomaterial_provider	*collection_date	*env_biome	*env_feature	*env_material	*geo_loc_name	*lat_lon	*project_name	*isol_growth_condt	*ref_biomaterial	*num_replicons	estimated_size	biotic_relationship	encoded_traits	extrachrom_elements	health_disease_stat	host	host_spec_range	pathogenicity	rel_to_oxygen	samp_collect_device	samp_mat_process	sample_size	source_material_id	subspecf_gen_lin	trophic_level	depth	alkalinity	biochem_oxygen_dem	chem_administration	chem_oxygen_dem	efficiency_percent	emulsions	gaseous_substances	indust_eff_percent	inorg_particles	misc_param	nitrate	org_particles	organism_count	oxy_stat_samp	perturbation	ph	phosphate	pre_treatment	primary_treatment	reactor_type	samp_salinity	samp_store_dur	samp_store_loc	samp_store_temp	secondary_treatment	sewage_type	sludge_retent_time	sodium	soluble_inorg_mat	soluble_org_mat	suspend_solids	temp	tertiary_treatment	tot_nitro	tot_phosphate	wastewater_type
68	Alicycliphilus sp.	Alicycliphilus sp. B1 isolated from activated sludge		Alicycliphilus sp. B1	1603291	PRJDB3450	ALISP	B1						2016	missing	industrial wastewate treatment plant	activated sludge	Japan:Tochigi	missing	Genome sequence of bacterial isolate from activated sludge	missing	missing	1
69
70	MIGS.eu
71	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	locus_tag_prefix	strain	breed	cultivar	isolate	label	biomaterial_provider	*collection_date	*env_biome	*env_feature	*env_material	*geo_loc_name	*lat_lon	*project_name	*isol_growth_condt	ref_biomaterial	*num_replicons	*estimated_size	*ploidy	*propagation	biotic_relationship	extrachrom_elements	health_disease_stat	host	host_spec_range	pathogenicity	samp_collect_device	samp_mat_process	sample_size	source_material_id	subspecf_gen_lin	trophic_level
72	Nipponbare WT-1-PG0219	Oryza sativa L. ssp. japonica cv. Nipponbare WT-1-PG0219		Oryza sativa Japonica Group	39947					Nipponbare				2013-06	cropland biome	paddy field	not applicable	Japan:Niigata	37.11 N 138.27 E	Comparative analysis of transformed and wild-type rice genome.	17372735		12	380000000 bp	diploid	sexual
73	Nipponbare WT-1-PG0361	Oryza sativa L. ssp. japonica cv. Nipponbare WT-1-PG0361		Oryza sativa Japonica Group	39947					Nipponbare				2013-06	cropland biome	paddy field	not applicable	Japan:Niigata	37.11 N 138.27 E	Comparative analysis of transformed and wild-type rice genome.	17372735		12	380000000 bp	diploid	sexual
74
75	MIGS.eu.plant-associated
76	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	locus_tag_prefix	strain	breed	cultivar	isolate	label	biomaterial_provider	*collection_date	*env_biome	*env_feature	*env_material	*geo_loc_name	*lat_lon	*project_name	*isol_growth_condt	ref_biomaterial	*num_replicons	*estimated_size	*ploidy	*propagation	biotic_relationship	extrachrom_elements	health_disease_stat	*host	host_spec_range	pathogenicity	samp_collect_device	samp_mat_process	sample_size	source_material_id	subspecf_gen_lin	trophic_level	depth	elev	altitude	age	air_temp_regm	antibiotic_regm	body_product	chem_administration	chem_mutagen	climate_environment	dry_mass	fertilizer_regm	fungicide_regm	gaseous_environment	genotype	gravity	growth_hormone_regm	growth_med	height_or_length	herbicide_regm	host_common_name	host_disease_stat	host_taxid	humidity_regm	infra_specific_name	infra_specific_rank	life_stage	mechanical_damage	mineral_nutr_regm	misc_param	non_mineral_nutr_regm	organism_count	oxy_stat_samp	perturbation	pesticide_regm	ph_regm	phenotype	plant_body_site	plant_product	radiation_regm	rainfall_regm	salt_regm	samp_salinity	samp_store_dur	samp_store_loc	samp_store_temp	season_environment	standing_water_regm	temp	tiss_cult_growth_med	tot_mass	water_temp_regm	watering_regm	wet_mass
77	IPU010	Ustilaginoidea virens Takahashi IPU010		Ustilaginoidea virens	1159556		UVI	IPU010					National Institute of Agrobiological Sciences, Japan	missing: data agreement established pre-2023	cropland biome	agricultural terrace	missing	Japan:Shiga	not collected	Ustilaginoidea virens Takahashi IPU010 genome project	missing		missing	31446769 bp	missing	missing				Oryza sativa Indica group
78
79	MIGS.vi.human-associated
80	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	strain	breed	cultivar	isolate	label	biomaterial_provider	*collection_date	*env_biome	*env_feature	*env_material	*geo_loc_name	*lat_lon	*project_name	*isol_growth_condt	ref_biomaterial	num_replicons	estimated_size	*propagation	biotic_relationship	encoded_traits	health_disease_stat	*host	host_spec_range	pathogenicity	samp_collect_device	samp_mat_process	sample_size	source_material_id	subspecf_gen_lin	age	amniotic_fluid_color	blood_blood_disord	body_mass_index	body_product	chem_administration	diet_last_six_month	drug_usage	family_relationship	foetal_health_stat	genotype	gestation_state	hiv_stat	host_body_site	host_body_temp	host_diet	host_disease_stat	host_height	host_subject_id	ihmc_ethnicity	ihmc_medication_code	kidney_disord	last_meal	maternal_health_stat	medic_hist_perform	misc_param	nose_throat_disord	occupation	organism_count	oxy_stat_samp	perturbation	pet_farm_animal	phenotype	pulmonary_disord	pulse	samp_salinity	samp_store_dur	samp_store_loc	samp_store_temp	sex	smoker	study_complt_stat	temp	tot_mass	travel_out_six_month	twin_sibling	urine_collect_meth	urogenit_tract_disor	weight_loss_3_month
81	0001_indonesia_control	Dengue virus from Control sample	LAMP product sequneces of the four dengue serotypes	Dengue virus	12637								2012/2015	missing	missing	blood	Indonesia	missing	Serotyping Dengue virus using an isothermal amplification and a portable sequencer	missing		1	11k	missing			healthy	Homo sapiens
82	0002_indonesia_single_sample	Dengue virus from Indonesian single clinical sample	LAMP product sequneces of the Indonesian clinical samples	Dengue virus	12637								2012/2015	missing	missing	blood	Indonesia	missing	Serotyping Dengue virus using an isothermal amplification and a portable sequencer	missing		1	11k	missing			fever	Homo sapiens
83
84	MIMARKS.specimen
85	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	strain	breed	cultivar	isolate	label	biomaterial_provider	*collection_date	*env_biome	*env_feature	*env_material	*geo_loc_name	*lat_lon	*project_name	*isol_growth_condt	biotic_relationship	extrachrom_elements	rel_to_oxygen	samp_collect_device	samp_mat_process	sample_size	source_material_id	subspecf_gen_lin	trophic_level
86	StAf_01	Strobilomyces confusus E38		Strobilomyces confusus	374762	PRJDB4146	E38						2004-08-15	temperate woodland biome	forest	not applicable	USA:New Jersey	40.0 N 74.83 W	Diversification analysis of Strobilomyces and Afroboletus	not provided
87	StAf_02	Strobilomyces pterosporus E52	MycoBank ID: 112101	Afroboletus pterosporus	1712121	PRJDB4146	E52						1978-06-06	tropical woodland biome	forest	not applicable	Nigeria	7.5 N 4.56 E	Diversification analysis of Strobilomyces and Afroboletus	not provided
88	StAf_03	Strobilomyces luteolus K2		Strobilomyces luteolus	1611890	PRJDB4146	K2						1976-01	tropical woodland biome	forest	not applicable	Zimbabwe	17.81 S 31.05 E	Diversification analysis of Strobilomyces and Afroboletus	not provided
89
90	MIMARKS.survey.host-associated
91	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	strain	breed	cultivar	isolate	label	biomaterial_provider	*collection_date	*env_biome	*env_feature	*env_material	*geo_loc_name	*lat_lon	*project_name	*host	rel_to_oxygen	samp_collect_device	samp_mat_process	sample_size	depth	elev	altitude	age	blood_press_diast	blood_press_syst	body_habitat	body_product	chem_administration	dry_mass	family_relationship	genotype	gravidity	height_or_length	host_body_site	host_body_temp	host_color	host_common_name	host_diet	host_disease_stat	host_growth_cond	host_shape	host_subject_id	host_taxid	infra_specific_name	infra_specific_rank	last_meal	life_stage	misc_param	organism_count	oxy_stat_samp	perturbation	phenotype	samp_salinity	samp_store_dur	samp_store_loc	samp_store_temp	sex	substrate	temp	tot_mass	host_sex
92	D14F1	Fecal sample from intestinal epithelial cell-specific alpha-mannosidase II deficient mouse F1		mouse gut metagenome	410661								2016-08-09	not applicable	not applicable	feces	missing: lab stock	not applicable	16S amplicon sequence analysis of gut microbiome in intestinal epithelial cell-specific alpha-mannosidase II deficient mice	Mus musculus																											F1																			female
93	D14F3	Fecal sample from control mouse F3		mouse gut metagenome	410661								2016-08-09	not applicable	not applicable	feces	missing: lab stock	not applicable	16S amplicon sequence analysis of gut microbiome in intestinal epithelial cell-specific alpha-mannosidase II deficient mice	Mus musculus																											F3																			female
94	D14M1	Fecal sample from control mouse M1		mouse gut metagenome	410661								2016-08-09	not applicable	not applicable	feces	missing: lab stock	not applicable	16S amplicon sequence analysis of gut microbiome in intestinal epithelial cell-specific alpha-mannosidase II deficient mice	Mus musculus																											M1																			male
95	D14M2	Fecal sample from intestinal epithelial cell-specific alpha-mannosidase II deficient mouse M2		mouse gut metagenome	410661								2016-08-09	not applicable	not applicable	feces	missing: lab stock	not applicable	16S amplicon sequence analysis of gut microbiome in intestinal epithelial cell-specific alpha-mannosidase II deficient mice	Mus musculus																											M2																			male
96
97	MIMARKS.survey.human-associated
98	*sample_name	*sample_title	description	*organism	taxonomy_id	bioproject_id	strain	breed	cultivar	isolate	label	biomaterial_provider	*collection_date	*env_biome	*env_feature	*env_material	*geo_loc_name	*lat_lon	*project_name	*host	rel_to_oxygen	samp_collect_device	samp_mat_process	sample_size	age	amniotic_fluid_color	blood_blood_disord	body_mass_index	body_product	chem_administration	diet_last_six_month	drug_usage	family_relationship	foetal_health_stat	genotype	gestation_state	hiv_stat	host_body_site	host_body_temp	host_diet	host_disease_stat	host_height	host_subject_id	ihmc_ethnicity	ihmc_medication_code	kidney_disord	last_meal	maternal_health_stat	medic_hist_perform	misc_param	nose_throat_disord	occupation	organism_count	oxy_stat_samp	perturbation	pet_farm_animal	phenotype	pulmonary_disord	pulse	samp_salinity	samp_store_dur	samp_store_loc	samp_store_temp	sex	smoker	study_complt_stat	temp	tot_mass	travel_out_six_month	twin_sibling	urine_collect_meth	urogenit_tract_disor	weight_loss_3_month
99	C1	16S rRNA genes amplified from genomic DNA isolated from tear fluid of healthy subject (C1)		human metagenome	646099	PRJDB3940							2009	not applicable	not applicable	tears	Japan:Tokyo, Minato-ku	35.65 N 139.74 E	Comprehensive analysis of microbes in human tear fluids	Homo sapiens																					healthy		C1
100	C2	16S rRNA genes amplified from genomic DNA isolated from tear fluid of healthy subject (C2)		human metagenome	646099	PRJDB3940							2009	not applicable	not applicable	tears	Japan:Tokyo, Minato-ku	35.65 N 139.74 E	Comprehensive analysis of microbes in human tear fluids	Homo sapiens																					healthy		C2