targetsPE.txt
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# Project ID: Arabidopsis - Pseudomonas alternative splicing study (SRA: SRP010938; PMID: 24098335)
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# The following line(s) allow to specify the contrasts needed for comparative analyses, such as DEG identification. All possible comparisons can be specified with 'CMPset: ALL'.
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# <CMP> CMPset1: M1-A1, M1-V1, A1-V1, M6-A6, M6-V6, A6-V6, M12-A12, M12-V12, A12-V12
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# <CMP> CMPset2: ALL
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FileName1FileName2SampleNameFactorSampleLongExperimentDate
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./data/SRR446027_1.fastq.gz./data/SRR446027_2.fastq.gzM1AM1Mock.1h.A13/23/2012
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./data/SRR446028_1.fastq.gz./data/SRR446028_2.fastq.gzM1BM1Mock.1h.B13/23/2012
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./data/SRR446029_1.fastq.gz./data/SRR446029_2.fastq.gzA1AA1Avr.1h.A13/23/2012
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./data/SRR446030_1.fastq.gz./data/SRR446030_2.fastq.gzA1BA1Avr.1h.B13/23/2012
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./data/SRR446031_1.fastq.gz./data/SRR446031_2.fastq.gzV1AV1Vir.1h.A13/23/2012
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./data/SRR446032_1.fastq.gz./data/SRR446032_2.fastq.gzV1BV1Vir.1h.B13/23/2012
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./data/SRR446033_1.fastq.gz./data/SRR446033_2.fastq.gzM6AM6Mock.6h.A13/23/2012
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./data/SRR446034_1.fastq.gz./data/SRR446034_2.fastq.gzM6BM6Mock.6h.B13/23/2012
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./data/SRR446035_1.fastq.gz./data/SRR446035_2.fastq.gzA6AA6Avr.6h.A13/23/2012
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./data/SRR446036_1.fastq.gz./data/SRR446036_2.fastq.gzA6BA6Avr.6h.B13/23/2012
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./data/SRR446037_1.fastq.gz./data/SRR446037_2.fastq.gzV6AV6Vir.6h.A13/23/2012
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./data/SRR446038_1.fastq.gz./data/SRR446038_2.fastq.gzV6BV6Vir.6h.B13/23/2012
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./data/SRR446039_1.fastq.gz./data/SRR446039_2.fastq.gzM12AM12Mock.12h.A13/23/2012
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./data/SRR446040_1.fastq.gz./data/SRR446040_2.fastq.gzM12BM12Mock.12h.B13/23/2012
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./data/SRR446041_1.fastq.gz./data/SRR446041_2.fastq.gzA12AA12Avr.12h.A13/23/2012
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./data/SRR446042_1.fastq.gz./data/SRR446042_2.fastq.gzA12BA12Avr.12h.B13/23/2012
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./data/SRR446043_1.fastq.gz./data/SRR446043_2.fastq.gzV12AV12Vir.12h.A13/23/2012
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./data/SRR446044_1.fastq.gz./data/SRR446044_2.fastq.gzV12BV12Vir.12h.B13/23/2012
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targetsPE