Continuous reporting data_ March2024-August2025

	A	B	C	D	E	F	G	H	I	J	K	L
1	Partner	Type of publication	Title	Authors	Title of the journal or equivalent	Journal number	Month and year of publication	Peer-review	Was the publication available in open access?	PIB (publisher version of record)	PID of deposited publication	Comments

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3	ALU-FR	Article in journal	Establishing the ELIXIR Microbiome Community.	Finn,R.D. et al. (2024)	F1000Research	13	1/24		TRUE
4	ALU-FR	Article in journal	Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy	Larivière,D. et al. (2024)	. Nature Biotechnology.
5	ALU-FR	Article in journal	Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses.	Rahman,N. et al. (2024)	Microbial Genomics	10
6	ALU-FR	Article in journal	DIMet: An open-source tool for Differential analysis of targeted Isotope-labeled Metabolomics data	Galvis,J. et al. (2024)	Bioinformatics
7	ALU-FR	Article in journal	The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update.	Abueg,L.A.L. et al. (2024)	Nucleic Acids Research
8	ALU-FR
9	STFC-UKRI	Article in journal	Hydrogen Radical Chemistry at High-Symmetry {2Fe2S} Centers Probed Using a Muonium Surrogate, J. Wright et. al.,(2025).		Inorganic Chemistry	https://pubs.acs.org/doi/10.1021/acs.inorgchem.4c05126	3/25	TRUE
10	BSC	Other	EOSC4Cancer D3.2 - Integrative analysis of multiple data types within cancer portals	Chèneby, J., & Hovig, E. (2024)	Zenodo	https://doi.org/10.5281/zenodo.14870839	11/24	TRUE	TRUE			EOSC4Cancer project deliverable proving the use of Galaxy in the cancer community. This is part of the outreach to other communities undergone in the ESG WP5 activities.
11	STFC-UKRI	Article in journal	Facilitating Reproducibility in Catalysis Research with Managed Workflows and RO-Crates: A Galaxy Case Study	Nieva de la Hidalga, Abraham; Liborio, Leandro; Austin, Patrick; Devadasan, Subindev; Underwood, Tom; Belozerov, Alexander; Wilding, Martin; Ramanan, Nitya; Catlow, C. Richard A.	ChemCatChem		03/25	TRUE	TRUE	https://doi.org/10.1002/cctc.202401676
12	UiO	Article in journal	Unlocking the potential of containers in scientific computing to achieve bitwise reproducibility, portability and performance	Jean Iaquinta & Anne Fouilloux	Springer Nature	https://w3id.org/ro-id/18d3e6d6-e559-4e43-b464-55275bd14708	03/25	TRUE		https://doi.org/10.1007/978-3-031-86240-3_4
13	UiO	Conference	Climate Modeling with Conda and Containers to Improve Computational Resource Usage while Achieving Native Performance and Reproducibility	Jean Iaquinta, Anne Fouilloux, Benjamin Ragan-Kelley	EGU25-2605	https://doi.org/10.5194/egusphere-egu25-2605	03/25	TRUE
14	STFC-UKRI	Article in journal	Electronic structure calculations for muon spectroscopy	L. Liborio et. al. (2025)	Electronic Structure	https://iopscience.iop.org/article/10.1088/2516-1075/adcb7c	05/25	TRUE
15	EPFL	Article in journal	Possibility of multi-TeV secondary gamma rays from GRB221009A			https://doi.org/10.1103/q7pf-d1k9
16	BSC	Other	EOSC4Cancer D2.2 - Analytical methods for data extraction, processing and sharing using biomedical images.	Navest, R., Chèneby, J., Achterberg, H., Gammaraccio, F., & Longo, D. (2025)	Zenodo	https://doi.org/10.5281/zenodo.15704480	05/25					EOSC4Cancer project deliverable proving the use of Galaxy in the cancer community. This is part of the outreach to other communities undergone in the ESG WP5 activities.
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