List of DNA sequences
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ABCDEFGHIJKLMNOPQRSTUVWXYZAA
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Date Made/Received
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TypeName(dd/mm/yy)SourceNotebookTm (°C)
Conc. (uM)
Sequence (5'-3') / Seq. file
-80°C Storage location
Source of DNA typeComments
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Phage DNASimon17/04/12PhD-7SN-V86-D1Sequencing file: Simon>V86_D1SN-V86Extracted ssDNAFPPTQLM
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Phage DNASimon17/04/12PhD-7SN-V86-D2Sequencing file: Simon>V86_D2SN-V86Extracted ssDNA
WT phage (no insert)
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Phage DNASimon17/04/12PhD-7SN-V86-D3Sequencing file: Simon>V86_D3SN-V86Extracted ssDNATLTPSHQ
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Phage DNASimon17/04/12PhD-7SN-V86-D6Sequencing file: Simon>V86_D6SN-V86Extracted ssDNASLPQNSP
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Phage DNASimon17/04/12PhD-7SN-V86-D7Sequencing file: Simon>V86_D7SN-V86Extracted ssDNAIVQEFPR
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Phage DNASimon17/04/12PhD-7SN-V86-D8Sequencing file: Simon>V86_D8SN-V86Extracted ssDNASLRPASL
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Phage DNASimon17/04/12PhD-7SN-V86-D9Sequencing file: Simon>V86_D9SN-V86Extracted ssDNAKPVTQKP
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Phage DNASimon17/04/12PhD-7SN-V86-D11Sequencing file: Simon>V86_D11SN-V86Extracted ssDNAQLATALM
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Phage DNASimon17/04/12PhD-7SN-V86-D13Sequencing file: Simon>V86_D13SN-V86Extracted ssDNAGTNPSPL
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Phage DNASimon17/04/12PhD-7SN-V86-D14Sequencing file: Simon>V86_D14SN-V86Extracted ssDNAQKLAETL
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Phage DNASimon17/04/12PhD-7SN-V86-D15Sequencing file: Simon>V86_D15SN-V86Extracted ssDNAAKPKWRF
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Phage DNASimon17/04/12PhD-7SN-V86-D17Sequencing file: Simon>V86_D17SN-V86Extracted ssDNATTSAPGW
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Phage DNASimon17/04/12PhD-7SN-V86-D19Sequencing file: Simon>V86_D19SN-V86Extracted ssDNAYQLDHSR
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Phage DNASimon17/04/12PhD-7SN-V86-D20Sequencing file: Simon>V86_D20SN-V86Extracted ssDNAGADILRL
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Phage DNASimon17/04/12PhD-7SN-V86-D21Sequencing file: Simon>V86_D21SN-V86Extracted ssDNALNSFSPN
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Phage DNASimon17/04/12PhD-7SN-V86-D22Sequencing file: Simon>V86_D22SN-V86Extracted ssDNAHHRPTLA
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Phage DNASimon17/04/12PhD-7SN-V86-D23Sequencing file: Simon>V86_D23SN-V86Extracted ssDNAAPFAFHQ
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Phage DNASimon17/04/12PhD-7SN-V86-D27Sequencing file: Simon>V86_D27SN-V86Extracted ssDNAMSPFNSL
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Phage DNASimon17/04/12PhD-7SN-V86-D29Sequencing file: Simon>V86_D29SN-V86Extracted ssDNATTVPDRH
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Phage DNASimon17/04/12PhD-7SN-V86-D31Sequencing file: Simon>V86_D31SN-V86Extracted ssDNAQNAAPVL
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Phage DNASimon17/04/12PhD-7SN-V86-D32Sequencing file: Simon>V86_D32SN-V86Extracted ssDNAQPGLVAR
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VectorMaribel2013-03-15MF-II-49prSetB vector N1N2 clone6 (sequenced)MF-BOX1plasmid DNA
His-N1N2-His clone 6
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Plasmid clone
Maribel2013-03-15MF-II-59prSetB vector N1N2miniZ clone7 (sequenced)MF-BOX1plasmid DNA
His-N1N2-mZ-His clone 7
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Plasmid clone
Maribel2013-03-16MF-II-59prSetB vector N1N2miniZ clone8 (sequenced)MF-BOX 1plasmid DNA
His-N1N2-mZ-His clone 8
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VectorMaribel2013-07-17IBApASK IBA5plus DNA vectorMF-BOX 1plasmid DNA
pASK IBA5plus DNA vector
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VectorMaribel2013-07-17MF-IV-30pASK IBA5plus vector N1N2miniZ clone5 (sequenced)MF-BOX 1plasmid DNA
Strep-N1N2-mZ-His clone 5
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VectorMaribel2013-07-17MF-IV-30pASK IBA5plus vector N1N2miniZ clone1 (sequenced)MF-BOX 2plasmid DNA
Strep-N1N2-mZ-His clone 1
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VectorMaribel2013-07-17MF-IV-30pASK IBA5plus vector N1N2miniZ clone3 (sequenced)MF-BOX 2plasmid DNA
Strep-N1N2-mZ-His clone 3
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VectorMaribel2013-07-17MF-IV-30pASK IBA5plus vector N1N2miniZ clone4 (sequenced)MF-BOX 2plasmid DNA
Strep-N1N2-mZ-His clone 4
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VectorMaribel2013-07-17MF-IV-30pASK IBA5plus vector N1N2miniZ clone6 (sequenced)MF-BOX 2plasmid DNA
Strep-N1N2-mZ-His clone 6
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Vector Katrina2011-07-25
KT-BOX TEMP-27
vector in bacteriapJET stock
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Phage DNAKatrina2011-11-21KT-II-147Sequencing file: Katrina>23-11b1-p_018.ab1
KT-BOX TEMP-34
ssDNA
Isolated Mutagenesis Clone - SacI/SpeI into SVEK
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Phage DNAKatrina2011-11-21KT-II-147Sequencing file: Katrina>24-11b2-p_017.ab1
KT-BOX TEMP-35
ssDNA
Isolated Mutagenesis Clone - SacI/SpeI into SVEK
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Phage DNAKatrina2011-11-21KT-II-147Sequencing file: Katrina>25-11b3-p_032.ab1
KT-BOX TEMP-36
ssDNA
Isolated Mutagenesis Clone - SacI/SpeI into SVEK
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Phage DNAKatrina2011-11-21KT-II-147Sequencing file: Katrina>26-11b4-p_031.ab1
KT-BOX TEMP-37
ssDNA
Isolated Mutagenesis Clone - SacI/SpeI into SVEK
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Phage DNAKatrina2011-11-21KT-II-147Sequencing file: Katrina>27-11b5-p_030.ab1
KT-BOX TEMP-38
ssDNA
Isolated Mutagenesis Clone - SacI/SpeI into SVEK
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Phage DNAKatrina2011-11-21KT-II-147Sequencing file: Katrina>28-11b6-p_029.ab1
KT-BOX TEMP-39
ssDNA
Isolated Mutagenesis Clone - SacI/SpeI into SVEK
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Phage DNAKatrina2011-11-21KT-II-147Sequencing file: Katrina>32-19w1p_025.ab1
KT-BOX TEMP-40
ssDNA
Isolated Mutagenesis Clone - SacI/SpeI into SVEK
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Phage DNAKatrina2011-11-21KT-II-147Sequencing file: Katrina>33-19w2p_040.ab1
KT-BOX TEMP-41
ssDNA
Isolated Mutagenesis Clone - SacI/SpeI into SVEK
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Phage DNAKatrina2011-11-21KT-II-147Sequencing file: Katrina>34-19w3p_039.ab1
KT-BOX TEMP-42
ssDNA
Isolated Mutagenesis Clone - SacI/SpeI into SVEK
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PlasmidKatrina2011-11-30KT-II-162Sequencing file: Katrina>10-S3K1A_015.ab1
KT-BOX TEMP-43
dsDNA from E. coli
Mutagenized SVEK with SacI SpeI insert
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PlasmidKatrina2011-11-30KT-II-162Sequencing file: Katrina>11-S3K1B_014.ab1
KT-BOX TEMP-44
dsDNA from E. coli
Mutagenized SVEK with SacI SpeI insert
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PlasmidKatrina2011-11-30KT-II-162Sequencing file: Katrina>12-S3K1C_013.ab1
KT-BOX TEMP-45
dsDNA from E. coli
Mutagenized SVEK with SacI SpeI insert (CTN2)
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PlasmidKatrina2011-11-30KT-II-162Sequencing file: Katrina>13-S3K2A_012.ab1
KT-BOX TEMP-46
dsDNA from E. coli
Mutagenized SVEK with SacI SpeI insert
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PlasmidKatrina2011-11-30KT-II-162Sequencing file: Katrina>14-S5F1B_011.ab1
KT-BOX TEMP-47
dsDNA from E. coli
Mutagenized SVEK with SacI SpeI insert (CT)
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PCR fragment
Katrina2011-08-12KT-II-27Sequencing file: Katrina>76-SfiI-PCR_029.ab1PCR fragment
SfiI PCR blunt-ended fragement
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PCR fragment
Katrina2011-08-12KT-II-27Sequencing file: Katrina>77-SacI-SpeI_PCR_028.ab1PCR fragment
SacI SpeI PCR blunt-ended fragment (wrong)
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plasmidKatrina2011-11-08KT-II-111Sequencing file: Katrina>724-pJET-8_017.ab1
phage DNA inserted into pJET scrrening vector
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plasmidKatrina2011-11-08KT-II-111Sequencing file: Katrina>25-pJET-9_032.ab1
phage DNA inserted into pJET scrrening vector
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plasmidKatrina2011-11-16KT-II-139Sequencing file: Katrina>26-QC-11_031.ab1
QuickChange Mutagenesis SacI SpeI plasmid
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plasmidKatrina2011-11-17KT-II-139Sequencing file: Katrina>27-QC-14_030.ab1
QuickChange Mutagenesis SacI SpeI plasmid
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plasmidKatrina2011-11-18KT-II-139Sequencing file: Katrina>28-QC-19_029.ab1
QuickChange Mutagenesis SacI SpeI plasmid
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plasmidKatrina2012-01-10KT-II-179Sequencing file: Katrina>39-1A_034.ab1
Failed CT + TEV/FLAG insert ligation
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plasmidKatrina2012-01-10KT-II-179Sequencing file: Katrina>40-1B_033.ab1
Failed CT + TEV/FLAG insert ligation
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plasmidKatrina2012-01-10KT-II-179Sequencing file: Katrina>41-1C_048.ab1
Failed CT + TEV/FLAG insert ligation
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plasmidKatrina2012-01-10KT-II-179Sequencing file: Katrina>42-1D_047.ab1
Failed CT + TEV/FLAG insert ligation
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plasmidKatrina2012-01-10KT-II-179Sequencing file: Katrina>43-3A_046.ab1
Failed CT + TEV/FLAG insert ligation
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plasmidKatrina2012-01-10KT-II-179Sequencing file: Katrina>44-3B_045.ab1
Failed CT + TEV/FLAG insert ligation
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plasmidKatrina2012-01-10KT-II-179Sequencing file: Katrina>45-3C_044 (1).ab1
Failed CT + TEV/FLAG insert ligation
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plasmidKatrina2012-01-10KT-II-179Sequencing file: Katrina>46-3D_043.ab1
Failed CT + TEV/FLAG insert ligation
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plasmidKatrina2012-01-10KT-II-179Sequencing file: Katrina>47-10A_042.ab1
Failed CT + TEV/FLAG insert ligation
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plasmidKatrina2012-01-10KT-II-179Sequencing file: Katrina>48-10B_041.ab1
Failed CT + TEV/FLAG insert ligation
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plasmidKatrina2012-01-10KT-II-179Sequencing file: Katrina>49-10C_008.ab1
Failed CT + TEV/FLAG insert ligation
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plasmidKatrina2012-01-10KT-II-179Sequencing file: Katrina>50-10D_007.ab1
Failed CT + TEV/FLAG insert ligation
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PlasmidKatrina2012-02-06KT-III-7Sequencing file: Katrina>12-LigA_013.ab1dsDNA from E. coli
More failed CT + TEV/FLAG insert ligation
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PlasmidKatrina2012-02-06KT-III-7Sequencing file: Katrina>13-LigB_012.ab1dsDNA from E. coli
More failed CT + TEV/FLAG insert ligation
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PlasmidKatrina2012-02-06KT-III-7Sequencing file: Katrina>14-LigC_011.ab1dsDNA from E. coli
More failed CT + TEV/FLAG insert ligation
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PlasmidKatrina2012-02-06KT-III-7Sequencing file: Katrina>15-LigD_010.ab1dsDNA from E. coli
More failed CT + TEV/FLAG insert ligation
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PlasmidKatrina2012-02-06KT-III-7Sequencing file: Katrina>16-LigE_009.ab1dsDNA from E. coli
More failed CT + TEV/FLAG insert ligation
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PlasmidKatrina2012-02-06KT-III-7Sequencing file: Katrina>17-LigF_024.ab1dsDNA from E. coli
More failed CT + TEV/FLAG insert ligation
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PlasmidKatrina2012-02-06KT-III-7Sequencing file: Katrina>18-LigG_023.ab1dsDNA from E. coli
More failed CT + TEV/FLAG insert ligation
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PlasmidKatrina2012-02-06KT-III-7Sequencing file: Katrina>19-LigH_022.ab1dsDNA from E. coli
More failed CT + TEV/FLAG insert ligation
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Synth fragment
Katrina2012-03-19KT-III-25Sequencing file: Katrina>Corrected TEV-FLAG insertsynthetic duplex
Corrected TEV-FLAG insert (this works)
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SSDNAReza2011-06-30RJ-II-86GGCCGAGCCGCCGCCCGCTTTTTTGCATTTCGCGCGCGCGTTTTTCGCCGCAATTTTGCACTGCGCTTCAGAGTGAGAATAGAAAGGTACsynthetic SS dna
HDH3 compliment
77
SSDNAReza2011-06-30RJ-II-86CCTTTCTATTCTCACTCTGAAGCGCAGTGCAAAATTGCGGCGAAAAACGCGCGCGCGAAATGCAAAAAAGCGGGCGGCGGCTCsynthetic SS dnaHDH3
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SSDNAReza2011-06-30RJ-II-86GGCCGAGCCGCCGCCCGCTTTTTTCGCTTTCGCGCGCGCGTTTTTCGCCGCAATTTTCGCCTGCGCTTCAGAGTGAGAATAGAAAGGTACsynthetic SS dna
HDH-C2A compliment
79
SSDNAReza2011-06-30RJ-II-86CCTTTCTATTCTCACTCTGAAGCGCAGGCGAAAATTGCGGCGAAAAACGCGCGCGCGAAAGCGAAAAAAGCGGGCGGCGGCTCsynthetic SS dnaHDH-C2A
80
SSDNAReza2011-06-30RJ-II-86GGCCGAGCCGCCGCCGCTTTTTTTAATTTTCGCGCGTTTGTTTTTAAACCAAATTTTAATCTGCGCTTCAGAGTGAGAATAGAAAGGTACsynthetic SS dna
EngQ50K compliment
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SSDNAReza2011-06-30RJ-II-86CCTTTCTATTCTCACTCTGAAGCGCAGATTAAAATTTGGTTTAAAAACAAACGCGCGAAAATTAAAAAAAGCGGCGGCGGCTCsynthetic SS dnaEngQ50K
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duplex DNAReza2011-06-30RJ-II-86Biosg/AACGCAGTGTAATCCCCTCGACsynthetic duplex DNARJ QRE
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duplex DNAReza2011-06-30RJ-II-86Biosg/AACGCAGTGTAATTACCTCGACsynthetic duplex DNARJ ERE
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duplex DNAReza2011-06-30RJ-II-86Biosg/AACAGGCAGCAGTGTTGGsynthetic duplex DNARJ- MCK-S
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Plasmids
Primers